-
1
-
-
84895858474
-
Dense genomic sampling identifes highways of pneumococcal recombination
-
Chewapreecha C, Harris SR, Croucher NJ et al. Dense genomic sampling identifes highways of pneumococcal recombination. Nat. Genet. 46(3), 305-309 (2014).
-
(2014)
Nat. Genet.
, vol.46
, Issue.3
, pp. 305-309
-
-
Chewapreecha, C.1
Harris, S.R.2
Croucher, N.J.3
-
2
-
-
0020558165
-
Multilocus genetic-structure in natural-populations of Escherichia-coli
-
Whittam TS, Ochman H, Selander RK. Multilocus genetic-structure in natural-populations of Escherichia-coli. Proc. Natl Acad. Sci. USA 80, 1751-1755 (1983).
-
(1983)
Proc. Natl Acad. Sci. USA
, vol.80
, pp. 1751-1755
-
-
Whittam, T.S.1
Ochman, H.2
Selander, R.K.3
-
3
-
-
13144252236
-
Multilocus sequence typing: A portable approach to the identifcation of clones within populations of pathogenic microorganisms
-
Maiden MCJ, Bygraves JA, Feil E et al. Multilocus sequence typing: a portable approach to the identifcation of clones within populations of pathogenic microorganisms. Proc. Natl Acad. Sci. USA 95, 3140-3145 (1998).
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 3140-3145
-
-
McJ, M.1
Bygraves, J.A.2
Feil, E.3
-
4
-
-
0343058364
-
Intercontinental spread of a genetically distinctive complex of clones of Neisseria meningitidis causing epidemic disease
-
Caugant DA, FrØholm LO, BØvre K et al. Intercontinental spread of a genetically distinctive complex of clones of Neisseria meningitidis causing epidemic disease. Proc. Natl Acad. Sci. USA 83, 4927-4931 (1986).
-
(1986)
Proc. Natl Acad. Sci. USA
, vol.83
, pp. 4927-4931
-
-
Caugant, D.A.1
FrØholm, L.O.2
BØvre, K.3
-
5
-
-
84866978016
-
Persistence of hyperinvasive meningococcal strain types during global spread as recorded in the PubMLST database
-
Watkins ER, Maiden MCJ. Persistence of hyperinvasive meningococcal strain types during global spread as recorded in the PubMLST database. PLoS ONE 7(9), e45349 (2012).
-
(2012)
PLoS ONE
, vol.7
, Issue.9
, pp. e45349
-
-
Watkins, E.R.1
Maiden, M.C.J.2
-
6
-
-
0027287389
-
How clonal are bacteria
-
Smith JM, Smith NH, Orourke M, Spratt BG. How clonal are bacteria. Proc. Natl Acad. Sci. USA 90, 4384-4388 (1993).
-
(1993)
Proc. Natl Acad. Sci. USA
, vol.90
, pp. 4384-4388
-
-
Smith, J.M.1
Smith, N.H.2
Orourke, M.3
Spratt, B.G.4
-
8
-
-
14544305228
-
The infuence of mutation, recombination, population history, and selection on patterns of genetic diversity in Neisseria meningitidis
-
Jolley KA, Wilson DJ, Kriz P, McVean G, Maiden MCJ. The infuence of mutation, recombination, population history, and selection on patterns of genetic diversity in Neisseria meningitidis. Mol. Biol. Evol. 22, 562-569 (2005).
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 562-569
-
-
Jolley, K.A.1
Wilson, D.J.2
Kriz, P.3
McVean, G.4
Maiden, M.C.J.5
-
9
-
-
54449093613
-
Role of selection in the emergence of lineages and the evolution of virulence in Neisseria meningitidis
-
Buckee CO, Jolley KA, Recker M et al. Role of selection in the emergence of lineages and the evolution of virulence in Neisseria meningitidis. Proc. Natl Acad. Sci. USA 105, 15082-15087 (2008).
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 15082-15087
-
-
Buckee, C.O.1
Jolley, K.A.2
Recker, M.3
-
10
-
-
0029894768
-
The maintenance of strain structure in populations of recombining infectious agents
-
Gupta S, Maiden MCJ, Feavers IM, Nee S, May RM, Anderson RM. The maintenance of strain structure in populations of recombining infectious agents. Nat. Med. 2, 437-442 (1996).
-
(1996)
Nat. Med.
, vol.2
, pp. 437-442
-
-
Gupta, S.1
McJ, M.2
Feavers, I.M.3
Nee, S.4
May, R.M.5
Anderson, R.M.6
-
11
-
-
84858339217
-
Niche and neutral effects of acquired immunity permit coexistence of pneumococcal serotypes
-
Cobey S, Lipsitch M. Niche and neutral effects of acquired immunity permit coexistence of pneumococcal serotypes. Science 335(6074), 1376-1380 (2012).
-
(2012)
Science
, vol.335
, Issue.6074
, pp. 1376-1380
-
-
Cobey, S.1
Lipsitch, M.2
-
12
-
-
84902654115
-
The impact of specifc and non-specifc immunity on the ecology of Streptococcus pneumoniae and the implications for vaccination
-
Flasche S, Edmunds WJ, Miller E, Goldblatt D, Robertson C, Choi YH. The impact of specifc and non-specifc immunity on the ecology of Streptococcus pneumoniae and the implications for vaccination. Proc. Biol. Sci. 280, 20131939 (2013).
-
(2013)
Proc. Biol. Sci.
, vol.280
, pp. 20131939
-
-
Flasche, S.1
Edmunds, W.J.2
Miller, E.3
Goldblatt, D.4
Robertson, C.5
Choi, Y.H.6
-
13
-
-
0032496361
-
Chaos, persistence, and evolution of strain structure in antigenically diverse infectious agents
-
Gupta S, Ferguson N, Anderson R. Chaos, persistence, and evolution of strain structure in antigenically diverse infectious agents. Science 280(5365), 912-915 (1998).
-
(1998)
Science
, vol.280
, Issue.5365
, pp. 912-915
-
-
Gupta, S.1
Ferguson, N.2
Anderson, R.3
-
14
-
-
77953483090
-
Long-term evolution of antigen repertoires among carried meningococci Proc
-
Buckee CO, Gupta S, Kriz P, Maiden MCJ, Jolley KA. Long-term evolution of antigen repertoires among carried meningococci Proc. Biol. Sci. 277, 1635-1641 (2010).
-
(2010)
Biol. Sci.
, vol.277
, pp. 1635-1641
-
-
Buckee, C.O.1
Gupta, S.2
Kriz, P.3
McJ, M.4
Jolley, K.A.5
-
15
-
-
0025989151
-
Effect of outer membrane vesicle vaccine against group B meningococcal disease in Norway
-
Bjune G, HØiby EA, GrØnnesby JK et al. Effect of outer membrane vesicle vaccine against group B meningococcal disease in Norway. Lancet 338 (8775), 1093-1096 (1991).
-
(1991)
Lancet
, vol.338
, Issue.8775
, pp. 1093-1096
-
-
Bjune, G.1
HØiby, E.A.2
GrØnnesby, J.K.3
-
16
-
-
14844296966
-
MeNZB: A safe and highly immunogenic tailor-made vaccine against the New Zealand Neisseria meningitidis serogroup B disease epidemic strain
-
Oster P, Lennon D, O'Hallahan J, Mulholland K, Reid S, Martin D. MeNZB: a safe and highly immunogenic tailor-made vaccine against the New Zealand Neisseria meningitidis serogroup B disease epidemic strain. Vaccine 23 (17-18), 2191-2196 (2005).
-
(2005)
Vaccine
, vol.23
, Issue.17-18
, pp. 2191-2196
-
-
Oster, P.1
Lennon, D.2
O'Hallahan, J.3
Mulholland, K.4
Reid, S.5
Martin, D.6
-
17
-
-
84886398159
-
Persistence of bactericidal antibodies following early infant vaccination with a serogroup B meningococcal vaccine and immunogenicity of a preschool booster dose
-
Snape MD, Saroey P, John TM et al. Persistence of bactericidal antibodies following early infant vaccination with a serogroup B meningococcal vaccine and immunogenicity of a preschool booster dose. CMAJ 185 (15), E 715-E 724 (2013).
-
(2013)
CMAJ
, vol.185
, Issue.15
, pp. E715-E724
-
-
Snape, M.D.1
Saroey, P.2
John, T.M.3
-
18
-
-
42949110732
-
The effect of immune selection on the structure of the meningococcal Opa protein repertoire
-
Callaghan MJ, Buckee CO, Jolley KA, Kriz P, Maiden MCJ, Gupta S. The effect of immune selection on the structure of the meningococcal Opa protein repertoire. PLoS Pathog. 4(3), e1000020 (2008).
-
(2008)
PLoS Pathog.
, vol.4
, Issue.3
, pp. e1000020
-
-
Callaghan, M.J.1
Buckee, C.O.2
Jolley, K.A.3
Kriz, P.4
McJ, M.5
Gupta, S.6
-
19
-
-
32044466276
-
Characterization of group A streptococci (Streptococcus pyogenes): Correlation of M-protein and emm-gene type with T-protein agglutination pattern and serum opacity factor
-
Johnson DR, Kaplan EL, VanGheem A, Facklam RR, Beall B. Characterization of group A streptococci (Streptococcus pyogenes): correlation of M-protein and emm-gene type with T-protein agglutination pattern and serum opacity factor. J. Med. Microbiol. 55, 157-164 (2006).
-
(2006)
J. Med. Microbiol.
, vol.55
, pp. 157-164
-
-
Johnson, D.R.1
Kaplan, E.L.2
VanGheem, A.3
Facklam, R.R.4
Beall, B.5
-
20
-
-
0345580661
-
Group B streptococcal surface proteins as targets for protective antibodies: Identifcation of two novel proteins in strains of serotype v
-
Areschoug T, Stålhammar-Carlemalm M, Larsson C, Lindahl G. Group B streptococcal surface proteins as targets for protective antibodies: Identifcation of two novel proteins in strains of serotype V. Infect. Immun. 67(12), 6350-6357 (1999).
-
(1999)
Infect. Immun.
, vol.67
, Issue.12
, pp. 6350-6357
-
-
Areschoug, T.1
Stålhammar-Carlemalm, M.2
Larsson, C.3
Lindahl, G.4
-
21
-
-
41149171187
-
Superinfection as a driver of genomic diversifcation in antigenically variant pathogens
-
Futse JE, Brayton KA, Dark MJ, Knowles DP, Palmer GH. Superinfection as a driver of genomic diversifcation in antigenically variant pathogens. Proc. Natl Acad. Sci. USA 105(6), 2123-2127 (2008).
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, Issue.6
, pp. 2123-2127
-
-
Futse, J.E.1
Brayton, K.A.2
Dark, M.J.3
Knowles, D.P.4
Palmer, G.H.5
-
22
-
-
73949157089
-
Between-strain competition in acquisition and clearance of pneumococcal carriage-epidemiologic evidence from a longitudinal study of day-care children
-
Auranen K, Mehtälä J, Tanskanen A, S Kaltoft M. Between-strain competition in acquisition and clearance of pneumococcal carriage-epidemiologic evidence from a longitudinal study of day-care children. Am. J. Epidemiol. 171, 169-176 (2010).
-
(2010)
Am. J. Epidemiol.
, vol.171
, pp. 169-176
-
-
Auranen, K.1
Mehtälä, J.2
Tanskanen, A.3
Kaltoft M, S.4
-
23
-
-
84862120517
-
Estimating rates of carriage acquisition and clearance and competitive ability for pneumococcal serotypes in Kenya with a Markov transition model
-
Lipsitch M, Abdullahi O, D Amour A et al. Estimating rates of carriage acquisition and clearance and competitive ability for pneumococcal serotypes in Kenya with a Markov transition model. Epidemiology 23, 510-519 (2012).
-
(2012)
Epidemiology
, vol.23
, pp. 510-519
-
-
Lipsitch, M.1
Abdullahi, O.2
Amour A, D.3
-
24
-
-
0034659608
-
Competition among Streptococcus pneumoniae for intranasal colonization in a mouse model
-
Lipsitch M, Dykes JK, Johnson SE et al. Competition among Streptococcus pneumoniae for intranasal colonization in a mouse model. Vaccine 18, 2895-2901 (2000).
-
(2000)
Vaccine
, vol.18
, pp. 2895-2901
-
-
Lipsitch, M.1
Dykes, J.K.2
Johnson, S.E.3
-
25
-
-
33846245425
-
2: A possible counteroffensive strategy for interspecies competition
-
2: a possible counteroffensive strategy for interspecies competition. Mol. Microbiol. 63(3), 872-880 (2007).
-
(2007)
Mol. Microbiol.
, vol.63
, Issue.3
, pp. 872-880
-
-
Tong, H.1
Chen, W.2
Merritt, J.3
Qi, F.4
Shi, W.5
Dong, X.6
-
26
-
-
84959054093
-
Commensal and pathogenic Escherichia coli metabolism in the gut
-
Conway T, Cohen PS. Commensal and pathogenic Escherichia coli metabolism in the gut. Microbiol. Spectr. (3), 1-15 (2015).
-
(2015)
Microbiol. Spectr.
, Issue.3
, pp. 1-15
-
-
Conway, T.1
Cohen, P.S.2
-
27
-
-
84870999292
-
Intestinal colonization resistance
-
Lawley TD, Walker AW. Intestinal colonization resistance. Immunology 138(1), 1-11 (2013).
-
(2013)
Immunology
, vol.138
, Issue.1
, pp. 1-11
-
-
Lawley, T.D.1
Walker, A.W.2
-
28
-
-
0025227905
-
The colonization resistance of the digestive tract in different animal species and in man; A comparative study
-
Van der Waaij D, Van der Waaij BD. The colonization resistance of the digestive tract in different animal species and in man; a comparative study. Epidemiol. Infect. 105(2), 237-243 (1990).
-
(1990)
Epidemiol. Infect.
, vol.105
, Issue.2
, pp. 237-243
-
-
Van Der Waaij, D.1
Van Der Waaij, B.D.2
-
29
-
-
85013847663
-
Genetics and Evolution of Infectious Diseases
-
Elsevier, Oxford
-
Tibayrenc M. Genetics and Evolution of Infectious Diseases. Science Direct, Elsevier, Oxford (2011).
-
(2011)
Science Direct
-
-
Tibayrenc, M.1
-
30
-
-
84925594814
-
A gene-by-gene population genomics platform: De novo assembly annotation and genealogical analysis of 108 representative Neisseria meningitidis genomes
-
Bratcher HB, Corton C, Jolley KA, Parkhill J, Maiden MCJ. A gene-by-gene population genomics platform: de novo assembly, annotation and genealogical analysis of 108 representative Neisseria meningitidis genomes. BMC Genomics 15, 1138 (2014).
-
(2014)
BMC Genomics
, vol.15
, pp. 1138
-
-
Bratcher, H.B.1
Corton, C.2
Jolley, K.A.3
Parkhill, J.4
Maiden, M.C.J.5
-
31
-
-
80055029470
-
The evolution of metabolic networks of e
-
Baumler DJ, Peplinski RG, Reed JL, Glasner JD, Perna NT. The evolution of metabolic networks of E. coli. BMC Syst. Biol. 5, 182 (2011).
-
(2011)
Coli. BMC Syst. Biol.
, vol.5
, pp. 182
-
-
Baumler, D.J.1
Peplinski, R.G.2
Reed, J.L.3
Glasner, J.D.4
Perna, N.T.5
-
32
-
-
79955625067
-
Virulence evolution of the human pathogen Neisseria meningitidis by recombination in the core and accessory genome
-
Joseph B, Schwarz RF, Linke B et al. Virulence evolution of the human pathogen Neisseria meningitidis by recombination in the core and accessory genome. PLoS ONE 6(4), e18441 (2011).
-
(2011)
PLoS ONE
, vol.6
, Issue.4
, pp. e18441
-
-
Joseph, B.1
Schwarz, R.F.2
Linke, B.3
-
33
-
-
79959881708
-
Are pathogenic bacteria just looking for food? Metabolism and microbial pathogenesis
-
Rohmer L, Hocquet D, Miller SI. Are pathogenic bacteria just looking for food? Metabolism and microbial pathogenesis. Trends Microbiol. 19(7), 341-348 (2011).
-
(2011)
Trends Microbiol.
, vol.19
, Issue.7
, pp. 341-348
-
-
Rohmer, L.1
Hocquet, D.2
Miller, S.I.3
-
34
-
-
0036154795
-
Speed versus effciency in microbial growth and the role of parallel pathways
-
Helling RB. Speed versus effciency in microbial growth and the role of parallel pathways. J. Bacteriol. 184(4), 1041-1045 (2002).
-
(2002)
J. Bacteriol.
, vol.184
, Issue.4
, pp. 1041-1045
-
-
Helling, R.B.1
-
35
-
-
79959326367
-
The decoupling between genetic structure and metabolic phenotypes in Escherichia coli leads to continuous phenotypic diversity
-
Sabarly V, Bouvet O, Glodt J et al. The decoupling between genetic structure and metabolic phenotypes in Escherichia coli leads to continuous phenotypic diversity. J. Evol. Biol. 24(7), 1559-1571 (2011).
-
(2011)
J. Evol. Biol.
, vol.24
, Issue.7
, pp. 1559-1571
-
-
Sabarly, V.1
Bouvet, O.2
Glodt, J.3
-
36
-
-
84925883497
-
Metabolism and virulence in Neisseria meningitidis
-
Schoen C, Kischkies L, Elias J, Ampattu BJ. Metabolism and virulence in Neisseria meningitidis. Front. Cell. Infect. Microbiol. 4, 114 (2014).
-
(2014)
Front. Cell. Infect. Microbiol.
, vol.4
, pp. 114
-
-
Schoen, C.1
Kischkies, L.2
Elias, J.3
Ampattu, B.J.4
-
37
-
-
46049089600
-
The role of complex carbohydrate catabolism in the pathogenesis of invasive streptococci
-
Shelburne SA, Davenport MT, Keith DB, Musser JM. The role of complex carbohydrate catabolism in the pathogenesis of invasive streptococci. Trends Microbiol. 16, 318-325 (2008).
-
(2008)
Trends Microbiol.
, vol.16
, pp. 318-325
-
-
Shelburne, S.A.1
Davenport, M.T.2
Keith, D.B.3
Musser, J.M.4
-
38
-
-
84867901259
-
Pneumococcal carbohydrate transport: Food for thought
-
Buckwalter CM, King SJ. Pneumococcal carbohydrate transport: food for thought. Trends Microbiol. 20, 517-522 (2012).
-
(2012)
Trends Microbiol.
, vol.20
, pp. 517-522
-
-
Buckwalter, C.M.1
King, S.J.2
-
39
-
-
84877829941
-
Microbial quest for food in vivo: "Nutritional virulence" as an emerging paradigm
-
Abu Kwaik Y, Bumann D. Microbial quest for food in vivo: "nutritional virulence" as an emerging paradigm. Cell Microbiol. 15, 882-890 (2013).
-
(2013)
Cell Microbiol.
, vol.15
, pp. 882-890
-
-
Abu Kwaik, Y.1
Bumann, D.2
-
40
-
-
59449104392
-
Global transcriptional profling reveals Streptococcus agalactiae genes controlled by the MtaR transcription factor
-
Bryan JD, Liles R, Cvek U, Trutschl M, Shelver D. Global transcriptional profling reveals Streptococcus agalactiae genes controlled by the MtaR transcription factor. BMC Genomics 9, 607 (2008).
-
(2008)
BMC Genomics
, vol.9
, pp. 607
-
-
Bryan, J.D.1
Liles, R.2
Cvek, U.3
Trutschl, M.4
Shelver, D.5
-
41
-
-
84907063977
-
A functional genomics catalogue of activated transcription factors during pathogenesis of pneumococcal disease
-
Mahdi LK, Deihimi T, Zamansani F et al. A functional genomics catalogue of activated transcription factors during pathogenesis of pneumococcal disease. BMC Genomics 15, 769 (2014).
-
(2014)
BMC Genomics
, vol.15
, pp. 769
-
-
Mahdi, L.K.1
Deihimi, T.2
Zamansani, F.3
-
42
-
-
84898842145
-
Escherichia coli pathotypes occupy distinct niches in the mouse intestine
-
Meador JP, Caldwell ME, Cohen PS, Conway T. Escherichia coli pathotypes occupy distinct niches in the mouse intestine. Infect. Immun. 82 (5), 1931-1938 (2014).
-
(2014)
Infect. Immun.
, vol.82
, Issue.5
, pp. 1931-1938
-
-
Meador, J.P.1
Caldwell, M.E.2
Cohen, P.S.3
Conway, T.4
-
43
-
-
73949111750
-
Bacterial competition: Surviving and thriving in the microbial jungle
-
Hibbing ME, Fuqua C, Parsek MR, Peterson SB. Bacterial competition: surviving and thriving in the microbial jungle. Nat. Rev. Microbiol. 8(1), 15-25 (2010).
-
(2010)
Nat. Rev. Microbiol.
, vol.8
, Issue.1
, pp. 15-25
-
-
Hibbing, M.E.1
Fuqua, C.2
Parsek, M.R.3
Peterson, S.B.4
-
44
-
-
0348225248
-
Factors determining the appearance of glucose in upper and lower respiratory tract secretions
-
Philips BJ, Meguer JX, Redman J, Baker EH. Factors determining the appearance of glucose in upper and lower respiratory tract secretions. Intensive Care Med. 29, 2204-2210 (2003).
-
(2003)
Intensive Care Med.
, vol.29
, pp. 2204-2210
-
-
Philips, B.J.1
Meguer, J.X.2
Redman, J.3
Baker, E.H.4
-
45
-
-
84959051388
-
Bacterial metabolism in the host environment: Pathogen growth and nutrient assimilation in the mammalian upper respiratory tract
-
Armstrong SK. Bacterial metabolism in the host environment: pathogen growth and nutrient assimilation in the mammalian upper respiratory tract. Microbiol. Spectr. 3(3), doi: 10.1128/microbiolspec.MBP-0007-2014 (2015).
-
(2015)
Microbiol. Spectr.
, vol.3
, Issue.3
-
-
Armstrong, S.K.1
-
46
-
-
63149148834
-
Identifcation of a pneumococcal glycosidase that modifes O-linked glycans
-
Marion C, Limoli DH, Bobulsky GS, Abraham JL, Burnaugh AM, King SJ. Identifcation of a pneumococcal glycosidase that modifes O-linked glycans. Infect. Immun. 77(4), 1389-1396 (2009).
-
(2009)
Infect. Immun.
, vol.77
, Issue.4
, pp. 1389-1396
-
-
Marion, C.1
Limoli, D.H.2
Bobulsky, G.S.3
Abraham, J.L.4
Burnaugh, A.M.5
King, S.J.6
-
47
-
-
33947186284
-
Metabolic diversity of the intestinal microbiota: Implications for health and disease
-
Blaut M, Clavel T. Metabolic diversity of the intestinal microbiota: implications for health and disease. J. Nutr. 137(3 Suppl. 2), S751-S755 (2007).
-
(2007)
J. Nutr.
, vol.137
, Issue.3
, pp. S751-S755
-
-
Blaut, M.1
Clavel, T.2
-
48
-
-
84901716155
-
From food to cell: Nutrient exploitation strategies of enteropathogens
-
Fuchs TM. From food to cell: nutrient exploitation strategies of enteropathogens. Microbiology 160, 1020-1039 (2014).
-
(2014)
Microbiology
, vol.160
, pp. 1020-1039
-
-
Fuchs, T.M.1
-
49
-
-
84858121089
-
A functional genomics approach to establish the complement of carbohydrate transporters in Streptococcus pneumoniae
-
Bidossi A, Mulas L, Decorosi F et al. A functional genomics approach to establish the complement of carbohydrate transporters in Streptococcus pneumoniae. PLoS ONE 7(3), e33320 (2012).
-
(2012)
PLoS ONE
, vol.7
, Issue.3
, pp. e33320
-
-
Bidossi, A.1
Mulas, L.2
Decorosi, F.3
-
50
-
-
84873561978
-
The ABC transporter encoded at the pneumococcal fructooligosaccharide utilization locus determines the ability to utilize long-and short-chain fructooligosaccharides
-
Linke CM, Woodiga SA, Meyers DJ, Buckwalter CM, Salhi HE, King SJ. The ABC transporter encoded at the pneumococcal fructooligosaccharide utilization locus determines the ability to utilize long-and short-chain fructooligosaccharides. J. Bacteriol. 195, 1031-1041 (2013).
-
(2013)
J. Bacteriol.
, vol.195
, pp. 1031-1041
-
-
Linke, C.M.1
Woodiga, S.A.2
Meyers, D.J.3
Buckwalter, C.M.4
Salhi, H.E.5
King, S.J.6
-
51
-
-
40749150035
-
Comparison of carbon nutrition for pathogenic and commensal Escherichia coli strains in the mouse intestine
-
Fabich AJ, Jones SA, Chowdhury FZ et al. Comparison of carbon nutrition for pathogenic and commensal Escherichia coli strains in the mouse intestine. Infect. Immun. 76(3), 1143-1152 (2008).
-
(2008)
Infect. Immun.
, vol.76
, Issue.3
, pp. 1143-1152
-
-
Fabich, A.J.1
Jones, S.A.2
Chowdhury, F.Z.3
-
52
-
-
84872517425
-
Nutritional basis for colonization resistance by human commensal Escherichia coli strains HS and Nissle 1917 against E. Coli O157:H7 in the mouse intestine
-
Maltby R, Leatham-Jensen MP, Gibson T, Cohen PS, Conway T. Nutritional basis for colonization resistance by human commensal Escherichia coli strains HS and Nissle 1917 against E. coli O157:H7 in the mouse intestine. PLoS ONE 8(1), e53957 (2013).
-
(2013)
PLoS ONE
, vol.8
, Issue.1
, pp. e53957
-
-
Maltby, R.1
Leatham-Jensen, M.P.2
Gibson, T.3
Cohen, P.S.4
Conway, T.5
-
53
-
-
70350010139
-
Differential recognition and hydrolysis of host carbohydrate antigens by Streptococcus pneumoniae family 98 glycoside hydrolases
-
Higgins MA, Whitworth GE, El Warry N et al. Differential recognition and hydrolysis of host carbohydrate antigens by Streptococcus pneumoniae family 98 glycoside hydrolases. J. Biol. Chem. 284, 26161-26173 (2009).
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 26161-26173
-
-
Higgins, M.A.1
Whitworth, G.E.2
El Warry, N.3
-
54
-
-
67650659120
-
Epidemiological evidence for the role of the hemoglobin receptor, HmbR, in meningococcal virulence
-
Harrison OB, Evans NJ, Blair JM et al. Epidemiological evidence for the role of the hemoglobin receptor, HmbR, in meningococcal virulence. J. Infect. Dis. 200, 94-98 (2009).
-
(2009)
J. Infect. Dis.
, vol.200
, pp. 94-98
-
-
Harrison, O.B.1
Evans, N.J.2
Blair, J.M.3
-
55
-
-
34247199539
-
Deletion of fetA gene sequences in serogroup B and C Neisseria meningitidis isolates
-
Marsh JW, O'Leary MM, Shutt KA, Harrison LH. Deletion of fetA gene sequences in serogroup B and C Neisseria meningitidis isolates. J. Clin. Microbiol. 45, 1333-1335 (2007).
-
(2007)
J. Clin. Microbiol.
, vol.45
, pp. 1333-1335
-
-
Marsh, J.W.1
O'Leary, M.M.2
Shutt, K.A.3
Harrison, L.H.4
-
56
-
-
12144289598
-
Regulation and differential expression of gdhA encoding NADP-specifc glutamate dehydrogenase in Neisseria meningitidis clinical isolates
-
Pagliarulo C, Salvatore P, De Vitis LR et al. Regulation and differential expression of gdhA encoding NADP-specifc glutamate dehydrogenase in Neisseria meningitidis clinical isolates. Mol. Microbiol. 51, 1757-1772 (2004).
-
(2004)
Mol. Microbiol.
, vol.51
, pp. 1757-1772
-
-
Pagliarulo, C.1
Salvatore, P.2
De Vitis, L.R.3
-
57
-
-
0001836888
-
Mechanisms that control the microfora in the large intestine
-
Academic Press, Inc., New York, NY, USA
-
Freter F. Mechanisms that control the microfora in the large intestine. In: Human Intestinal Microfora In Health And Disease. Academic Press, Inc., New York, NY, USA, 33-54 (1983).
-
(1983)
Human Intestinal Microfora in Health and Disease
, pp. 33-54
-
-
Freter, F.1
-
58
-
-
79959400835
-
Genotype and phenotypes of an intestine-adapted Escherichia coli K-12 mutant selected by animal passage for superior colonization
-
Fabich AJ, Leatham MP, Grissom JE et al. Genotype and phenotypes of an intestine-adapted Escherichia coli K-12 mutant selected by animal passage for superior colonization. Infect. Immun. 79(6), 2430-2439 (2011).
-
(2011)
Infect. Immun.
, vol.79
, Issue.6
, pp. 2430-2439
-
-
Fabich, A.J.1
Leatham, M.P.2
Grissom, J.E.3
-
59
-
-
84938815034
-
Vaccination drives changes in metabolic and virulence profles of Streptococcus pneumoniae
-
Watkins ER, Penman BS, Lourenço J, Buckee CO, Maiden MCJ, Gupta S. Vaccination drives changes in metabolic and virulence profles of Streptococcus pneumoniae. PLoS Pathog. 11(7), e1005034 (2015).
-
(2015)
PLoS Pathog.
, vol.11
, Issue.7
, pp. e1005034
-
-
Watkins, E.R.1
Penman, B.S.2
Lourenço, J.3
Buckee, C.O.4
McJ, M.5
Gupta, S.6
-
60
-
-
0031010869
-
Vaccination against colonizing bacteria with multiple serotypes
-
Lipsitch M. Vaccination against colonizing bacteria with multiple serotypes. Proc. Natl Acad. Sci. USA 94, 6571-6576 (1997).
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 6571-6576
-
-
Lipsitch, M.1
-
61
-
-
10444283458
-
The infuence of competition and vaccination on the coexistence of two pneumococcal serotypes
-
Zhang Y, Auranen K, Eichner M. The infuence of competition and vaccination on the coexistence of two pneumococcal serotypes. Epidemiol. Infect. 132(6), 1073-1081 (2004).
-
(2004)
Epidemiol. Infect.
, vol.132
, Issue.6
, pp. 1073-1081
-
-
Zhang, Y.1
Auranen, K.2
Eichner, M.3
-
62
-
-
7844228954
-
Experimental analysis of vito volterra's mathematical theory of the struggle for existence
-
Gause GF. Experimental analysis of vito volterra's mathematical theory of the struggle for existence. Science 79, 16-17 (1934).
-
(1934)
Science
, vol.79
, pp. 16-17
-
-
Gause, G.F.1
-
63
-
-
4644237146
-
Distribution of surface protein variants among hyperinvasive meningococci: Implications for vaccine design
-
Urwin R, Russell JE, Thompson EAL, Holmes EC, Feavers IM, Maiden MCJ. Distribution of surface protein variants among hyperinvasive meningococci: Implications for vaccine design. Infect. Immun. 72, 5955-5962 (2004).
-
(2004)
Infect. Immun.
, vol.72
, pp. 5955-5962
-
-
Urwin, R.1
Russell, J.E.2
Eal, T.3
Holmes, E.C.4
Feavers, I.M.5
Maiden, M.C.J.6
-
64
-
-
0023185906
-
Genetic-structure of neisseria-meningitidis populations in relation to serogroup, serotype, and outer-membrane protein pattern
-
Caugant DA, Mocca LF, Frasch CE, Froholm LO, Zollinger WD, Selander RK. Genetic-structure of neisseria-meningitidis populations in relation to serogroup, serotype, and outer-membrane protein pattern. J. Bacteriol. 169, 2781-2792 (1987).
-
(1987)
J. Bacteriol.
, vol.169
, pp. 2781-2792
-
-
Caugant, D.A.1
Mocca, L.F.2
Frasch, C.E.3
Froholm, L.O.4
Zollinger, W.D.5
Selander, R.K.6
-
65
-
-
84878152623
-
An analysis of the sequence variability of meningococcal fHbp, NadA and NHBA over a 50-year period in the Netherlands
-
Bambini S, Piet J, Muzzi A et al. An analysis of the sequence variability of meningococcal fHbp, NadA and NHBA over a 50-year period in The Netherlands. PLoS ONE 8(5), e65043 (2013).
-
(2013)
PLoS ONE
, vol.8
, Issue.5
, pp. e65043
-
-
Bambini, S.1
Piet, J.2
Muzzi, A.3
-
66
-
-
71449128303
-
Genetic diversity and stability of the porA allele as a genetic marker in human Campylobacter infection
-
Cody AJ, Maiden MJC, Dingle KE. Genetic diversity and stability of the porA allele as a genetic marker in human Campylobacter infection. Microbiology 155 (Pt 12), 4145-4154 (2009).
-
(2009)
Microbiology
, vol.155
, pp. 4145-4154
-
-
Cody, A.J.1
Mjc, M.2
Dingle, K.E.3
-
67
-
-
0035091072
-
Allelic diversity and recombination in Campylobacter jejuni
-
Suerbaum S, Lohrengel M, Sonnevend A, Ruberg F, Kist M. Allelic diversity and recombination in Campylobacter jejuni. J. Bacteriol. 183, 2553-2559 (2001).
-
(2001)
J. Bacteriol.
, vol.183
, pp. 2553-2559
-
-
Suerbaum, S.1
Lohrengel, M.2
Sonnevend, A.3
Ruberg, F.4
Kist, M.5
-
68
-
-
38949178833
-
Comparison of seven techniques for typing international epidemic strains of Clostridium diffcile: Restriction endonuclease analysis, pulsed-feld gel electrophoresis, PCR-ribotyping, multilocus variable-number tandem-repeat analysis, amplifed fragment length polymorphism, and surface layer protein A gene sequence typing
-
Killgore G, Thompson A, Johnson S et al. Comparison of seven techniques for typing international epidemic strains of Clostridium diffcile: restriction endonuclease analysis, pulsed-feld gel electrophoresis, PCR-ribotyping, multilocus variable-number tandem-repeat analysis, amplifed fragment length polymorphism, and surface layer protein A gene sequence typing. J. Clin. Microbiol. 46(2), 431-437 (2008).
-
(2008)
J. Clin. Microbiol.
, vol.46
, Issue.2
, pp. 431-437
-
-
Killgore, G.1
Thompson, A.2
Johnson, S.3
-
69
-
-
77952168929
-
Evolutionary dynamics of Clostridium diffcile over short and long time scales
-
He M, Sebaihia M, Lawley TD et al. Evolutionary dynamics of Clostridium diffcile over short and long time scales. Proc. Natl Acad. Sci. USA 107, 7527-7532 (2010).
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 7527-7532
-
-
He, M.1
Sebaihia, M.2
Lawley, T.D.3
-
70
-
-
69949106201
-
A trilocus sequence typing scheme for hospital epidemiology and subspecies differentiation of an important nosocomial pathogen, Enterococcus faecalis
-
Chowdhury SA, Arias CA, Nallapareddy SR, Reyes J, Willems RJL, Murray BE. A trilocus sequence typing scheme for hospital epidemiology and subspecies differentiation of an important nosocomial pathogen, Enterococcus faecalis. J. Clin. Microbiol. 47, 2713-2719 (2009).
-
(2009)
J. Clin. Microbiol.
, vol.47
, pp. 2713-2719
-
-
Chowdhury, S.A.1
Arias, C.A.2
Nallapareddy, S.R.3
Reyes, J.4
Rjl, W.5
Murray, B.E.6
-
71
-
-
84890547166
-
Recent recombination events in the core genome are associated with adaptive evolution in Enterococcus faecium
-
de Been M, van Schaik W, Cheng L, Corander J, Willems RJ. Recent recombination events in the core genome are associated with adaptive evolution in Enterococcus faecium. Genome Biol. Evol. 5(8), 1524-1535 (2013).
-
(2013)
Genome Biol. Evol.
, vol.5
, Issue.8
, pp. 1524-1535
-
-
De Been, M.1
Van Schaik, W.2
Cheng, L.3
Corander, J.4
Willems, R.J.5
-
72
-
-
0029073796
-
Clonal relationships among blood-stream isolates of Escherichia-coli
-
Maslow JN, Whittam TS, Gilks CF et al. Clonal relationships among blood-stream isolates of Escherichia-coli. Infect. Immun. 63, 2409-2417 (1995).
-
(1995)
Infect. Immun.
, vol.63
, pp. 2409-2417
-
-
Maslow, J.N.1
Whittam, T.S.2
Gilks, C.F.3
-
73
-
-
33745282930
-
Sex and virulence in Escherichia coli: An evolutionary perspective
-
Wirth T, Falush D, Lan RT et al. Sex and virulence in Escherichia coli: an evolutionary perspective. Mol. Microbiol. 60, 1136-1151 (2006).
-
(2006)
Mol. Microbiol.
, vol.60
, pp. 1136-1151
-
-
Wirth, T.1
Falush, D.2
Lan, R.T.3
-
74
-
-
0023804309
-
Evolutionary genetics of the encapsulated strains of Hemophilus-infuenzae
-
Musser JM, Kroll JS, Moxon ER, Selander RK. Evolutionary genetics of the encapsulated strains of Hemophilus-infuenzae. Proc. Natl Acad. Sci. USA 85, 7758-7762 (1988).
-
(1988)
Proc. Natl Acad. Sci. USA
, vol.85
, pp. 7758-7762
-
-
Musser, J.M.1
Kroll, J.S.2
Moxon, E.R.3
Selander, R.K.4
-
75
-
-
79960936369
-
Transformation of natural genetic variation into Haemophilus infuenzae genomes
-
Mell JC, Shumilina S, Hall IM, Redfeld RJ. Transformation of natural genetic variation into Haemophilus infuenzae genomes. PLoS Pathog. 7(7), e1002151 (2011).
-
(2011)
PLoS Pathog.
, vol.7
, Issue.7
, pp. e1002151
-
-
Mell, J.C.1
Shumilina, S.2
Hall, I.M.3
Redfeld, R.J.4
-
76
-
-
12444303202
-
Characterization of encapsulated and noncapsulated Haemophilus infuenzae and determination of phylogenetic relationships by multilocus sequence typing
-
Meats E, Feil EJ, Stringer S et al. Characterization of encapsulated and noncapsulated Haemophilus infuenzae and determination of phylogenetic relationships by multilocus sequence typing. J. Clin. Microbiol. 41, 1623-1636 (2003).
-
(2003)
J. Clin. Microbiol.
, vol.41
, pp. 1623-1636
-
-
Meats, E.1
Feil, E.J.2
Stringer, S.3
-
77
-
-
53749091581
-
Comparison of PFGE and multilocus sequence typing for analysis of Klebsiella pneumoniae isolates
-
Vimont S, Mnif B, Fevre C, Brisse S. Comparison of PFGE and multilocus sequence typing for analysis of Klebsiella pneumoniae isolates. J. Med. Microbiol. 57, 1308-1310 (2008).
-
(2008)
J. Med. Microbiol.
, vol.57
, pp. 1308-1310
-
-
Vimont, S.1
Mnif, B.2
Fevre, C.3
Brisse, S.4
-
78
-
-
63449117143
-
Virulent clones of Klebsiella pneumoniae: Identifcation and evolutionary scenario based on genomic and phenotypic characterization
-
Brisse S, Fevre C, Passet V et al. Virulent clones of Klebsiella pneumoniae: identifcation and evolutionary scenario based on genomic and phenotypic characterization. PLoS ONE 4(3), e4982 (2009).
-
(2009)
PLoS ONE
, vol.4
, Issue.3
, pp. e4982
-
-
Brisse, S.1
Fevre, C.2
Passet, V.3
-
79
-
-
0001080878
-
Genetic-characterization of clones of the bacterium listeria-monocytogenes causing epidemic disease
-
Piffaretti JC, Kressebuch H, Aeschbacher M et al. Genetic-characterization of clones of the bacterium listeria-monocytogenes causing epidemic disease. Proc. Natl Acad. Sci. USA 86, 3818-3822 (1989).
-
(1989)
Proc. Natl Acad. Sci. USA
, vol.86
, pp. 3818-3822
-
-
Piffaretti, J.C.1
Kressebuch, H.2
Aeschbacher, M.3
-
80
-
-
55149118920
-
Lineage specifc recombination rates and microevolution in Listeria monocytogenes
-
den Bakker HC, Didelot X, Fortes ED, Nightingale KK, Wiedmann M. Lineage specifc recombination rates and microevolution in Listeria monocytogenes. BMC Evol. Biol. 8, 277 (2008).
-
(2008)
BMC Evol. Biol.
, vol.8
, pp. 277
-
-
Den Bakker, H.C.1
Didelot, X.2
Fortes, E.D.3
Nightingale, K.K.4
Wiedmann, M.5
-
81
-
-
63049093141
-
Relative contributions of recombination and mutation to the diversifcation of the opa gene repertoire of Neisseria gonorrhoeae
-
Bilek N, Ison CA, Spratt BG. Relative contributions of recombination and mutation to the diversifcation of the opa gene repertoire of Neisseria gonorrhoeae. J. Bacteriol. 191, 1878-1890 (2009).
-
(2009)
J. Bacteriol.
, vol.191
, pp. 1878-1890
-
-
Bilek, N.1
Ison, C.A.2
Spratt, B.G.3
-
82
-
-
0027332184
-
Genetic-structure of neisseria-gonorrhoeae populations - A non-clonal pathogen
-
Orourke M, Stevens E. Genetic-structure of neisseria-gonorrhoeae populations-a non-clonal pathogen. J. Gen. Microbiol. 139, 2603-2611 (1993).
-
(1993)
J. Gen. Microbiol.
, vol.139
, pp. 2603-2611
-
-
Orourke, M.1
Stevens, E.2
-
83
-
-
58949091439
-
A common gene pool for the Neisseria FetA antigen
-
Bennett JS, Thompson EAL, Kriz P, Jolley KA, Maiden MCJ. A common gene pool for the Neisseria FetA antigen. Int. J. Med. Microbiol. 299, 133-139 (2009).
-
(2009)
Int. J. Med. Microbiol.
, vol.299
, pp. 133-139
-
-
Bennett, J.S.1
Eal, T.2
Kriz, P.3
Jolley, K.A.4
Maiden, M.C.J.5
-
84
-
-
0035012347
-
Genetic diversity of Neisseria lactamica strains from epidemiologically defned carriers
-
Alber D, Oberkotter M, Suerbaum S, Claus H, Frosch M, Vogel U. Genetic diversity of Neisseria lactamica strains from epidemiologically defned carriers. J. Clin. Microbiol. 39, 1710-1715 (2001).
-
(2001)
J. Clin. Microbiol.
, vol.39
, pp. 1710-1715
-
-
Alber, D.1
Oberkotter, M.2
Suerbaum, S.3
Claus, H.4
Frosch, M.5
Vogel, U.6
-
85
-
-
71449107073
-
Variation of the factor H-binding protein of Neisseria meningitidis
-
Brehony C, Wilson DJ, Maiden MCJ. Variation of the factor H-binding protein of Neisseria meningitidis. Microbiol. SGM 155, 4155-4169 (2009).
-
(2009)
Microbiol. SGM
, vol.155
, pp. 4155-4169
-
-
Brehony, C.1
Wilson, D.J.2
Maiden, M.C.J.3
-
86
-
-
33748074140
-
Opacity-associated adhesin repertoire in hyperinvasive Neisseria meningitidis
-
Callaghan MJ, Jolley KA, Maiden MCJ. Opacity-associated adhesin repertoire in hyperinvasive Neisseria meningitidis. Infect. Immun. 74, 5085-5094 (2006).
-
(2006)
Infect. Immun.
, vol.74
, pp. 5085-5094
-
-
Callaghan, M.J.1
Jolley, K.A.2
Maiden, M.C.J.3
-
87
-
-
0030840531
-
Genetic relationships among Pasteurella trehalosi isolates based on multilocus enzyme electrophoresis
-
Davies RL, Arkinsaw S, Selander RK. Genetic relationships among Pasteurella trehalosi isolates based on multilocus enzyme electrophoresis. Microbiology-UK 143, 2841-2849 (1997).
-
(1997)
Microbiology-UK
, vol.143
, pp. 2841-2849
-
-
Davies, R.L.1
Arkinsaw, S.2
Selander, R.K.3
-
88
-
-
0036135496
-
Mosaic structure and molecular evolution of the leukotoxin operon (lktCABD) in mannheimia (Pasteurella) haemolytica Mannheimia glucosida and Pasteurella trehalosi
-
Davies RL, Campbell S, Whittam TS. Mosaic structure and molecular evolution of the leukotoxin operon (lktCABD) in mannheimia (Pasteurella) haemolytica, Mannheimia glucosida, and Pasteurella trehalosi. J. Bacteriol. 184, 266-277 (2002).
-
(2002)
J. Bacteriol.
, vol.184
, pp. 266-277
-
-
Davies, R.L.1
Campbell, S.2
Whittam, T.S.3
-
89
-
-
84864059917
-
Multilocus sequence typing as a replacement for serotyping in Salmonella enterica
-
Achtman M, Wain J, Weill F-X et al. Multilocus sequence typing as a replacement for serotyping in Salmonella enterica. PLoS Pathog. 8(6), e100277 (2012).
-
(2012)
PLoS Pathog.
, vol.8
, Issue.6
, pp. e100277
-
-
Achtman, M.1
Wain, J.2
Weill, F.-X.3
-
90
-
-
79960935954
-
Recombination and population structure in Salmonella enterica
-
Didelot X, Bowden R, Street T et al. Recombination and population structure in Salmonella enterica. PLoS Genet. 7(7), e1002191 (2011).
-
(2011)
PLoS Genet.
, vol.7
, Issue.7
, pp. e1002191
-
-
Didelot, X.1
Bowden, R.2
Street, T.3
-
91
-
-
84862908088
-
Challenges for the evaluation of Staphylococcus aureus protein based vaccines monitoring antigenic diversity
-
Murphy E, Lin SL, Nunez L et al. Challenges for the evaluation of Staphylococcus aureus protein based vaccines monitoring antigenic diversity. Hum. Vaccin. 7, 51-59 (2011).
-
(2011)
Hum. Vaccin.
, vol.7
, pp. 51-59
-
-
Murphy, E.1
Lin, S.L.2
Nunez, L.3
-
92
-
-
84901447320
-
Mobile elements drive recombination hotspots in the core genome of Staphylococcus aureus
-
Everitt RG, Didelot X, Batty EM et al. Mobile elements drive recombination hotspots in the core genome of Staphylococcus aureus. Nat. Commun. 5, 3956 (2014).
-
(2014)
Nat. Commun.
, vol.5
, pp. 3956
-
-
Everitt, R.G.1
Didelot, X.2
Batty, E.M.3
-
93
-
-
84896695748
-
Population structure of methicillin-susceptible Staphylococcus aureus (MSSA) in Portugal over a 19-year period (1992-2011)
-
Tavares A, Faria NA, de Lencastre H, Miragaia M. Population structure of methicillin-susceptible Staphylococcus aureus (MSSA) in Portugal over a 19-year period (1992-2011). Eur. J. Clin. Microbiol. Infect. Dis. 33, 423-432 (2014).
-
(2014)
Eur. J. Clin. Microbiol. Infect. Dis.
, vol.33
, pp. 423-432
-
-
Tavares, A.1
Faria, N.A.2
De Lencastre, H.3
Miragaia, M.4
-
94
-
-
0031764441
-
A multilocus sequence typing scheme for Streptococcus pneumoniae: Identifcation of clones associated with serious invasive disease
-
Enright MC, Spratt BG. A multilocus sequence typing scheme for Streptococcus pneumoniae: identifcation of clones associated with serious invasive disease. Microbiology 144(Pt 11), 3049-3060 (1998).
-
(1998)
Microbiology
, vol.144
, pp. 3049-3060
-
-
Enright, M.C.1
Spratt, B.G.2
-
95
-
-
84895858474
-
Dense genomic sampling identifes highways of pneumococcal recombination
-
Chewapreecha C, Harris SR, Croucher NJ et al. Dense genomic sampling identifes highways of pneumococcal recombination. Nat. Genet. 46(3), 305-309 (2014).
-
(2014)
Nat. Genet.
, vol.46
, Issue.3
, pp. 305-309
-
-
Chewapreecha, C.1
Harris, S.R.2
Croucher, N.J.3
-
96
-
-
3042662429
-
Multilocus sequence typing of Streptococcus pyogenes representing most known emm types and distinctions among subpopulation genetic structures
-
McGregor KF, Spratt BG, Kalia A et al. Multilocus sequence typing of Streptococcus pyogenes representing most known emm types and distinctions among subpopulation genetic structures. J. Bacteriol. 186, 4285-4294 (2004).
-
(2004)
J. Bacteriol.
, vol.186
, pp. 4285-4294
-
-
McGregor, K.F.1
Spratt, B.G.2
Kalia, A.3
-
97
-
-
68649094454
-
Population biology of the human restricted pathogen, Streptococcus pyogenes
-
Bessen DE. Population biology of the human restricted pathogen, Streptococcus pyogenes. Infect. Genet. Evol. 9, 581-593 (2009).
-
(2009)
Infect. Genet. Evol.
, vol.9
, pp. 581-593
-
-
Bessen, D.E.1
-
98
-
-
0035082969
-
Multilocus sequence typing of Streptococcus pyogenes and the relationships between emm type and clone
-
Enright MC, Spratt BG, Kalia A, Cross JH, Bessen DE. Multilocus sequence typing of Streptococcus pyogenes and the relationships between emm type and clone. Infect. Immun. 69, 2416-2427 (2001).
-
(2001)
Infect. Immun.
, vol.69
, pp. 2416-2427
-
-
Enright, M.C.1
Spratt, B.G.2
Kalia, A.3
Cross, J.H.4
Bessen, D.E.5
-
99
-
-
85003724738
-
-
PubMed.gov
-
PubMed.gov. www.ncbi.nlm.nih.gov/pubmed
-
-
-
-
100
-
-
85003762387
-
-
PubML ST
-
PubML ST. http://pubmlst.net
-
-
-
-
101
-
-
58049202235
-
Fine-scale phylogeographic structure of Borrelia lusitaniae revealed by multilocus sequence typing
-
Victorino LR, Margos G, Feil EJ, Collares-Pereira M, Zé-Zé L, Kurtenbach K. Fine-scale phylogeographic structure of Borrelia lusitaniae revealed by multilocus sequence typing. PLoS ONE 3(12), e4002 (2008).
-
(2008)
PLoS ONE
, vol.3
, Issue.12
, pp. e4002
-
-
Victorino, L.R.1
Margos, G.2
Feil, E.J.3
Collares-Pereira, M.4
Zé-Zé, L.5
Kurtenbach, K.6
-
102
-
-
79952711441
-
Neisseria meningitidis is structured in clades associated with restriction modifcation systems that modulate homologous recombination
-
Budroni S, Siena E, Hotopp JCD et al. Neisseria meningitidis is structured in clades associated with restriction modifcation systems that modulate homologous recombination. Proc. Natl Acad. Sci. USA 108, 4494-4499 (2011).
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 4494-4499
-
-
Budroni, S.1
Siena, E.2
Jcd, H.3
-
103
-
-
84926308364
-
Selective and genetic constraints on pneumococcal serotype switching
-
Croucher N, Kagedan L, Thompson CM et al. Selective and genetic constraints on pneumococcal serotype switching. PLoS Genet. 11(3), e1005095 (2015).
-
(2015)
PLoS Genet.
, vol.11
, Issue.3
, pp. e1005095
-
-
Croucher, N.1
Kagedan, L.2
Thompson, C.M.3
-
104
-
-
0038555738
-
Clonal relationships between invasive and carriage Streptococcus pneumoniae and serotype-and clone-specifc differences in invasive disease potential
-
Brueggemann AB, Griffths DT, Meats E, Peto T, Crook DW, Spratt BG. Clonal relationships between invasive and carriage Streptococcus pneumoniae and serotype-and clone-specifc differences in invasive disease potential. J. Infect. Dis. 187, 1424-1432 (2003).
-
(2003)
J. Infect. Dis.
, vol.187
, pp. 1424-1432
-
-
Brueggemann, A.B.1
Griffths, D.T.2
Meats, E.3
Peto, T.4
Crook, D.W.5
Spratt, B.G.6
-
105
-
-
11144258643
-
Invasiveness of serotypes and clones of Streptococcus pneumoniae among children in Finland
-
Hanage WP, Kaijalainen TH, Syrjanen RK et al. Invasiveness of serotypes and clones of Streptococcus pneumoniae among children in Finland. Infect. Immun. 73, 431-435 (2005).
-
(2005)
Infect. Immun.
, vol.73
, pp. 431-435
-
-
Hanage, W.P.1
Kaijalainen, T.H.2
Syrjanen, R.K.3
-
106
-
-
84873493253
-
A single multilocus sequence typing (MLST) scheme for seven pathogenic leptospira species
-
Boonsilp S, Thaipadungpanit J, Amornchai P et al. A single multilocus sequence typing (MLST) scheme for seven pathogenic leptospira species. PLoS Negl. Trop. Dis. 7(1), e1954 (2013).
-
(2013)
PLoS Negl. Trop. Dis.
, vol.7
, Issue.1
, pp. e1954
-
-
Boonsilp, S.1
Thaipadungpanit, J.2
Amornchai, P.3
-
107
-
-
0023628618
-
Molecular epidemiology of Legionella species by restriction endonuclease and alloenzyme analysis
-
Tompkins LS, Troup NJ, Woods T, Bibb W, McKinney RM. Molecular epidemiology of Legionella species by restriction endonuclease and alloenzyme analysis. J. Clin. Microbiol. 25(10), 1875-1880 (1987).
-
(1987)
J. Clin. Microbiol.
, vol.25
, Issue.10
, pp. 1875-1880
-
-
Tompkins, L.S.1
Troup, N.J.2
Woods, T.3
Bibb, W.4
McKinney, R.M.5
-
108
-
-
77952957949
-
Multidrug-resistant epidemic clones among bloodstream isolates of Pseudomonas aeruginosa in the Czech Republic
-
Nemec A, Krizova L, Maixnerova M, Musilek M. Multidrug-resistant epidemic clones among bloodstream isolates of Pseudomonas aeruginosa in the Czech Republic. Res. Microbiol. 161(3), 234-242 (2010).
-
(2010)
Res. Microbiol.
, vol.161
, Issue.3
, pp. 234-242
-
-
Nemec, A.1
Krizova, L.2
Maixnerova, M.3
Musilek, M.4
-
109
-
-
0038519412
-
Multilocus sequence typing system for group B Streptococcus
-
Jones N, Bohnsack JF, Takahashi S et al. Multilocus sequence typing system for group B Streptococcus. J. Clin. Microbiol. 41(6), 2530-2536 (2003).
-
(2003)
J. Clin. Microbiol.
, vol.41
, Issue.6
, pp. 2530-2536
-
-
Jones, N.1
Bohnsack, J.F.2
Takahashi, S.3
-
110
-
-
53649084492
-
Molecular characterization of human-colonizing Streptococcus agalactiae strains isolated from throat, skin, anal margin, and genital body sites
-
Van Der Mee-Marquet N, Fourny L, Arnault L et al. Molecular characterization of human-colonizing Streptococcus agalactiae strains isolated from throat, skin, anal margin, and genital body sites. J. Clin. Microbiol. 46(9), 2906-2911 (2008).
-
(2008)
J. Clin. Microbiol.
, vol.46
, Issue.9
, pp. 2906-2911
-
-
Van Der Mee-Marquet, N.1
Fourny, L.2
Arnault, L.3
-
111
-
-
0033598784
-
Yersinia pestis, the cause of plague, is a recently emerged clone of Yersinia pseudotuberculosis
-
Achtman M, Zurth K, Morelli G, Torrea G, Guiyoule A, Carniel E. Yersinia pestis, the cause of plague, is a recently emerged clone of Yersinia pseudotuberculosis. Proc. Natl Acad. Sci. USA 96(24), 14043-14048 (1999).
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, Issue.24
, pp. 14043-14048
-
-
Achtman, M.1
Zurth, K.2
Morelli, G.3
Torrea, G.4
Guiyoule, A.5
Carniel, E.6
-
112
-
-
48949117595
-
On the origin of the treponematoses: A phylogenetic approach
-
Harper KN, Ocampo PS, Steiner BM et al. On the origin of the treponematoses: a phylogenetic approach. PLoS Negl. Trop. Dis. 2(1), e148 (2008).
-
(2008)
PLoS Negl. Trop. Dis.
, vol.2
, Issue.1
, pp. e148
-
-
Harper, K.N.1
Ocampo, P.S.2
Steiner, B.M.3
-
113
-
-
9244227067
-
Population structure and evolution of the Bacillus cereus group
-
Priest FG, Barker M, Baillie LWJ, Holmes EC, Maiden MCJ. Population structure and evolution of the Bacillus cereus group. J. Bacteriol. 186(23), 7959-7970 (2004).
-
(2004)
J. Bacteriol.
, vol.186
, Issue.23
, pp. 7959-7970
-
-
Priest, F.G.1
Barker, M.2
Baillie, L.W.J.3
Holmes, E.C.4
Maiden, M.C.J.5
-
114
-
-
36349028084
-
Genetic diversity of the obligate intracellular bacterium Chlamydophila pneumoniae by genome-wide analysis of single nucleotide polymorphisms: Evidence for highly clonal population structure
-
Rattei T, Ott S, Gutacker M et al. Genetic diversity of the obligate intracellular bacterium Chlamydophila pneumoniae by genome-wide analysis of single nucleotide polymorphisms: evidence for highly clonal population structure. BMC Genomics 8, 355 (2007).
-
(2007)
BMC Genomics
, vol.8
, pp. 355
-
-
Rattei, T.1
Ott, S.2
Gutacker, M.3
-
115
-
-
0030931719
-
Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination
-
Sreevatsan S, Pan X, Stockbauer KE et al. Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination. Proc. Natl Acad. Sci. USA 94, 9869-9874 (1997).
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 9869-9874
-
-
Sreevatsan, S.1
Pan, X.2
Stockbauer, K.E.3
-
116
-
-
80054093790
-
Serotype replacement in disease after pneumococcal vaccination
-
Weinberger DM, Malley R, Lipsitch M. Serotype replacement in disease after pneumococcal vaccination. Lancet 378, 1962-1973 (2011).
-
(2011)
Lancet
, vol.378
, pp. 1962-1973
-
-
Weinberger, D.M.1
Malley, R.2
Lipsitch, M.3
-
117
-
-
33644917475
-
Pre-and postvaccination clonal compositions of invasive pneumococcal serotypes for isolates collected in the United States in 1999, 2001, and 2002
-
Beall B, McEllistrem MC, Gertz RE et al. Pre-and postvaccination clonal compositions of invasive pneumococcal serotypes for isolates collected in the United States in 1999, 2001, and 2002. J. Clin. Microbiol. 44, 999-1017 (2006).
-
(2006)
J. Clin. Microbiol.
, vol.44
, pp. 999-1017
-
-
Beall, B.1
McEllistrem, M.C.2
Gertz, R.E.3
-
118
-
-
74549202659
-
Genome-wide dissection of globally emergent multi-drug resistant serotype 19A Streptococcus pneumoniae
-
Pillai DR, Shahinas D, Buzina A et al. Genome-wide dissection of globally emergent multi-drug resistant serotype 19A Streptococcus pneumoniae. BMC Genomics 10, 642 (2009).
-
(2009)
BMC Genomics
, vol.10
, pp. 642
-
-
Pillai, D.R.1
Shahinas, D.2
Buzina, A.3
-
119
-
-
84866615007
-
Evolving picture of invasive pneumococcal disease in Massachusetts children: A comparison of disease in 2007-2009 with earlier periods
-
Yildirim I, Stevenson A, Hsu KK, Pelton SI. Evolving picture of invasive pneumococcal disease in massachusetts children: a comparison of disease in 2007-2009 with earlier periods. Pediatr. Infect. Dis. J. 31, 1016-1021 (2012).
-
(2012)
Pediatr. Infect. Dis. J.
, vol.31
, pp. 1016-1021
-
-
Yildirim, I.1
Stevenson, A.2
Hsu, K.K.3
Pelton, S.I.4
-
120
-
-
84857655371
-
Pneumococcal genome sequencing tracks a vaccine escape variant formed through a multi-fragment recombination event
-
Golubchik T, Brueggemann AB, Street T et al. Pneumococcal genome sequencing tracks a vaccine escape variant formed through a multi-fragment recombination event. Nat. Genet. 44, 352-355 (2012).
-
(2012)
Nat. Genet.
, vol.44
, pp. 352-355
-
-
Golubchik, T.1
Brueggemann, A.B.2
Street, T.3
-
121
-
-
37349058158
-
Vaccine escape recombinants emerge after pneumococcal vaccination in the United States
-
Brueggemann AB, Pai R, Crook DW, Beall B. Vaccine escape recombinants emerge after pneumococcal vaccination in the united states. PLoS Pathog. 3, 1628-1636 (2007).
-
(2007)
PLoS Pathog.
, vol.3
, pp. 1628-1636
-
-
Brueggemann, A.B.1
Pai, R.2
Crook, D.W.3
Beall, B.4
-
122
-
-
84878735463
-
Population genomics of post-vaccine changes in pneumococcal epidemiology
-
Croucher NJ, Finkelstein J A, Pelton SI et al. Population genomics of post-vaccine changes in pneumococcal epidemiology. Nat. Genet. 45(6), 656-663 (2013).
-
(2013)
Nat. Genet.
, vol.45
, Issue.6
, pp. 656-663
-
-
Croucher, N.J.1
Finkelstein, J.A.2
Pelton, S.I.3
-
123
-
-
77952695187
-
Increase in Pilus Islet 2-encoded Pili among Streptococcus pneumoniae Isolates, Atlanta, Georgia, USA
-
Zahner D, Gudlavalleti A, Stephens DS. Increase in Pilus Islet 2-encoded Pili among Streptococcus pneumoniae Isolates, Atlanta, Georgia, USA. Emerg. Infect. Dis. 16, 955-962 (2010).
-
(2010)
Emerg. Infect. Dis.
, vol.16
, pp. 955-962
-
-
Zahner, D.1
Gudlavalleti, A.2
Stephens, D.S.3
-
124
-
-
67650080596
-
Precolonized human commensal Escherichia coli strains serve as a barrier to E. Coli O157:H7 growth in the streptomycin-treated mouse intestine
-
Leatham MP, Banerjee S, Autieri SM, Mercado-Lubo R, Conway T, Cohen PS. Precolonized human commensal Escherichia coli strains serve as a barrier to E. coli O157:H7 growth in the streptomycin-treated mouse intestine. Infect. Immun. 77(7), 2876-2886 (2009).
-
(2009)
Infect. Immun.
, vol.77
, Issue.7
, pp. 2876-2886
-
-
Leatham, M.P.1
Banerjee, S.2
Autieri, S.M.3
Mercado-Lubo, R.4
Conway, T.5
Cohen, P.S.6
-
125
-
-
84934440446
-
Examination of Staphylococcus epidermidis bioflms using fow-cell technology
-
Moormeier DE, Bayles KW. Examination of Staphylococcus epidermidis bioflms using fow-cell technology. Methods Mol. Biol. 1106, 143-155 (2014).
-
(2014)
Methods Mol. Biol.
, vol.1106
, pp. 143-155
-
-
Moormeier, D.E.1
Bayles, K.W.2
-
126
-
-
84908291385
-
Multisubstrate isotope labeling and metagenomic analysis of active soil bacterial communities
-
Verastegui Y, Cheng J, Engel K et al. Multisubstrate isotope labeling and metagenomic analysis of active soil bacterial communities. MBio 5(4), e01157-e01114 (2014).
-
(2014)
MBio
, vol.5
, Issue.4
, pp. e01114-e01157
-
-
Verastegui, Y.1
Cheng, J.2
Engel, K.3
-
127
-
-
84927158514
-
Phenotypic heterogeneity in metabolic traits among single cells of a rare bacterial species in its natural environment quantifed with a combination of fow cell sorting and NanoSIMS
-
Zimmermann M, Escrig S, Hübschmann T et al. Phenotypic heterogeneity in metabolic traits among single cells of a rare bacterial species in its natural environment quantifed with a combination of fow cell sorting and NanoSIMS. Front. Microbiol. 6, 243 (2015).
-
(2015)
Front. Microbiol.
, vol.6
, pp. 243
-
-
Zimmermann, M.1
Escrig, S.2
Hübschmann, T.3
-
128
-
-
56449131373
-
Modeling Neisseria meningitidis B metabolism at different specifc growth rates
-
Baart GJE, Willemsen M, Khatami E et al. Modeling Neisseria meningitidis B metabolism at different specifc growth rates. Biotechnol. Bioeng. 101, 1022-1035 (2008).
-
(2008)
Biotechnol. Bioeng.
, vol.101
, pp. 1022-1035
-
-
Gje, B.1
Willemsen, M.2
Khatami, E.3
-
129
-
-
79953739461
-
Transcriptome analysis of bacterial pathogens in vivo: Problems and solutions
-
Skvortsov TA, Azhikina TL. [Transcriptome analysis of bacterial pathogens in vivo: problems and solutions]. Bioorg. Khim. 36(5), 596-606 (2010).
-
(2010)
Bioorg. Khim.
, vol.36
, Issue.5
, pp. 596-606
-
-
Skvortsov, T.A.1
Azhikina, T.L.2
-
130
-
-
84887255689
-
Probing bacterial metabolism during infection using high-resolution transcriptomics
-
Jorth P, Trivedi U, Rumbaugh K, Whiteley M. Probing bacterial metabolism during infection using high-resolution transcriptomics. J. Bacteriol. 195(22), 4991-4998 (2013).
-
(2013)
J. Bacteriol.
, vol.195
, Issue.22
, pp. 4991-4998
-
-
Jorth, P.1
Trivedi, U.2
Rumbaugh, K.3
Whiteley, M.4
|