메뉴 건너뛰기




Volumn 11, Issue 10, 2016, Pages 1339-1357

Metabolic competition as a driver of bacterial population structure

Author keywords

bacterial pathogens; competition; mathematical models; metabolism; vaccination

Indexed keywords

BACTERIAL GENE; BACTERIAL METABOLISM; BACTERIAL STRUCTURES; BACTERIUM; CONCEPTUAL FRAMEWORK; DISEASE CONTROL; ECOLOGY; GENETIC VARIABILITY; HOST PATHOGEN INTERACTION; NONHUMAN; POPULATION STRUCTURE; PRIORITY JOURNAL; REVIEW; ALLELE; BIODIVERSITY; CLASSIFICATION; DRUG EFFECTS; EVOLUTION; GENETIC VARIATION; GENETICS; HOST PARASITE INTERACTION; HUMAN; METABOLISM; MULTILOCUS SEQUENCE TYPING; PATHOGENICITY; THEORETICAL MODEL; VACCINATION;

EID: 85003633053     PISSN: 17460913     EISSN: 17460921     Source Type: Journal    
DOI: 10.2217/fmb-2016-0079     Document Type: Review
Times cited : (14)

References (130)
  • 1
    • 84895858474 scopus 로고    scopus 로고
    • Dense genomic sampling identifes highways of pneumococcal recombination
    • Chewapreecha C, Harris SR, Croucher NJ et al. Dense genomic sampling identifes highways of pneumococcal recombination. Nat. Genet. 46(3), 305-309 (2014).
    • (2014) Nat. Genet. , vol.46 , Issue.3 , pp. 305-309
    • Chewapreecha, C.1    Harris, S.R.2    Croucher, N.J.3
  • 2
    • 0020558165 scopus 로고
    • Multilocus genetic-structure in natural-populations of Escherichia-coli
    • Whittam TS, Ochman H, Selander RK. Multilocus genetic-structure in natural-populations of Escherichia-coli. Proc. Natl Acad. Sci. USA 80, 1751-1755 (1983).
    • (1983) Proc. Natl Acad. Sci. USA , vol.80 , pp. 1751-1755
    • Whittam, T.S.1    Ochman, H.2    Selander, R.K.3
  • 3
    • 13144252236 scopus 로고    scopus 로고
    • Multilocus sequence typing: A portable approach to the identifcation of clones within populations of pathogenic microorganisms
    • Maiden MCJ, Bygraves JA, Feil E et al. Multilocus sequence typing: a portable approach to the identifcation of clones within populations of pathogenic microorganisms. Proc. Natl Acad. Sci. USA 95, 3140-3145 (1998).
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 3140-3145
    • McJ, M.1    Bygraves, J.A.2    Feil, E.3
  • 4
    • 0343058364 scopus 로고
    • Intercontinental spread of a genetically distinctive complex of clones of Neisseria meningitidis causing epidemic disease
    • Caugant DA, FrØholm LO, BØvre K et al. Intercontinental spread of a genetically distinctive complex of clones of Neisseria meningitidis causing epidemic disease. Proc. Natl Acad. Sci. USA 83, 4927-4931 (1986).
    • (1986) Proc. Natl Acad. Sci. USA , vol.83 , pp. 4927-4931
    • Caugant, D.A.1    FrØholm, L.O.2    BØvre, K.3
  • 5
    • 84866978016 scopus 로고    scopus 로고
    • Persistence of hyperinvasive meningococcal strain types during global spread as recorded in the PubMLST database
    • Watkins ER, Maiden MCJ. Persistence of hyperinvasive meningococcal strain types during global spread as recorded in the PubMLST database. PLoS ONE 7(9), e45349 (2012).
    • (2012) PLoS ONE , vol.7 , Issue.9 , pp. e45349
    • Watkins, E.R.1    Maiden, M.C.J.2
  • 7
    • 13844309567 scopus 로고    scopus 로고
    • Neutral microepidemic evolution of bacterial pathogens
    • Fraser C, Hanage W P, Spratt BG. Neutral microepidemic evolution of bacterial pathogens. Proc. Natl Acad. Sci. USA 102, 1968-1973 (2005).
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 1968-1973
    • Fraser, C.1    Hanage, W.P.2    Spratt, B.G.3
  • 8
    • 14544305228 scopus 로고    scopus 로고
    • The infuence of mutation, recombination, population history, and selection on patterns of genetic diversity in Neisseria meningitidis
    • Jolley KA, Wilson DJ, Kriz P, McVean G, Maiden MCJ. The infuence of mutation, recombination, population history, and selection on patterns of genetic diversity in Neisseria meningitidis. Mol. Biol. Evol. 22, 562-569 (2005).
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 562-569
    • Jolley, K.A.1    Wilson, D.J.2    Kriz, P.3    McVean, G.4    Maiden, M.C.J.5
  • 9
    • 54449093613 scopus 로고    scopus 로고
    • Role of selection in the emergence of lineages and the evolution of virulence in Neisseria meningitidis
    • Buckee CO, Jolley KA, Recker M et al. Role of selection in the emergence of lineages and the evolution of virulence in Neisseria meningitidis. Proc. Natl Acad. Sci. USA 105, 15082-15087 (2008).
    • (2008) Proc. Natl Acad. Sci. USA , vol.105 , pp. 15082-15087
    • Buckee, C.O.1    Jolley, K.A.2    Recker, M.3
  • 10
    • 0029894768 scopus 로고    scopus 로고
    • The maintenance of strain structure in populations of recombining infectious agents
    • Gupta S, Maiden MCJ, Feavers IM, Nee S, May RM, Anderson RM. The maintenance of strain structure in populations of recombining infectious agents. Nat. Med. 2, 437-442 (1996).
    • (1996) Nat. Med. , vol.2 , pp. 437-442
    • Gupta, S.1    McJ, M.2    Feavers, I.M.3    Nee, S.4    May, R.M.5    Anderson, R.M.6
  • 11
    • 84858339217 scopus 로고    scopus 로고
    • Niche and neutral effects of acquired immunity permit coexistence of pneumococcal serotypes
    • Cobey S, Lipsitch M. Niche and neutral effects of acquired immunity permit coexistence of pneumococcal serotypes. Science 335(6074), 1376-1380 (2012).
    • (2012) Science , vol.335 , Issue.6074 , pp. 1376-1380
    • Cobey, S.1    Lipsitch, M.2
  • 12
    • 84902654115 scopus 로고    scopus 로고
    • The impact of specifc and non-specifc immunity on the ecology of Streptococcus pneumoniae and the implications for vaccination
    • Flasche S, Edmunds WJ, Miller E, Goldblatt D, Robertson C, Choi YH. The impact of specifc and non-specifc immunity on the ecology of Streptococcus pneumoniae and the implications for vaccination. Proc. Biol. Sci. 280, 20131939 (2013).
    • (2013) Proc. Biol. Sci. , vol.280 , pp. 20131939
    • Flasche, S.1    Edmunds, W.J.2    Miller, E.3    Goldblatt, D.4    Robertson, C.5    Choi, Y.H.6
  • 13
    • 0032496361 scopus 로고    scopus 로고
    • Chaos, persistence, and evolution of strain structure in antigenically diverse infectious agents
    • Gupta S, Ferguson N, Anderson R. Chaos, persistence, and evolution of strain structure in antigenically diverse infectious agents. Science 280(5365), 912-915 (1998).
    • (1998) Science , vol.280 , Issue.5365 , pp. 912-915
    • Gupta, S.1    Ferguson, N.2    Anderson, R.3
  • 14
    • 77953483090 scopus 로고    scopus 로고
    • Long-term evolution of antigen repertoires among carried meningococci Proc
    • Buckee CO, Gupta S, Kriz P, Maiden MCJ, Jolley KA. Long-term evolution of antigen repertoires among carried meningococci Proc. Biol. Sci. 277, 1635-1641 (2010).
    • (2010) Biol. Sci. , vol.277 , pp. 1635-1641
    • Buckee, C.O.1    Gupta, S.2    Kriz, P.3    McJ, M.4    Jolley, K.A.5
  • 15
    • 0025989151 scopus 로고
    • Effect of outer membrane vesicle vaccine against group B meningococcal disease in Norway
    • Bjune G, HØiby EA, GrØnnesby JK et al. Effect of outer membrane vesicle vaccine against group B meningococcal disease in Norway. Lancet 338 (8775), 1093-1096 (1991).
    • (1991) Lancet , vol.338 , Issue.8775 , pp. 1093-1096
    • Bjune, G.1    HØiby, E.A.2    GrØnnesby, J.K.3
  • 16
    • 14844296966 scopus 로고    scopus 로고
    • MeNZB: A safe and highly immunogenic tailor-made vaccine against the New Zealand Neisseria meningitidis serogroup B disease epidemic strain
    • Oster P, Lennon D, O'Hallahan J, Mulholland K, Reid S, Martin D. MeNZB: a safe and highly immunogenic tailor-made vaccine against the New Zealand Neisseria meningitidis serogroup B disease epidemic strain. Vaccine 23 (17-18), 2191-2196 (2005).
    • (2005) Vaccine , vol.23 , Issue.17-18 , pp. 2191-2196
    • Oster, P.1    Lennon, D.2    O'Hallahan, J.3    Mulholland, K.4    Reid, S.5    Martin, D.6
  • 17
    • 84886398159 scopus 로고    scopus 로고
    • Persistence of bactericidal antibodies following early infant vaccination with a serogroup B meningococcal vaccine and immunogenicity of a preschool booster dose
    • Snape MD, Saroey P, John TM et al. Persistence of bactericidal antibodies following early infant vaccination with a serogroup B meningococcal vaccine and immunogenicity of a preschool booster dose. CMAJ 185 (15), E 715-E 724 (2013).
    • (2013) CMAJ , vol.185 , Issue.15 , pp. E715-E724
    • Snape, M.D.1    Saroey, P.2    John, T.M.3
  • 18
    • 42949110732 scopus 로고    scopus 로고
    • The effect of immune selection on the structure of the meningococcal Opa protein repertoire
    • Callaghan MJ, Buckee CO, Jolley KA, Kriz P, Maiden MCJ, Gupta S. The effect of immune selection on the structure of the meningococcal Opa protein repertoire. PLoS Pathog. 4(3), e1000020 (2008).
    • (2008) PLoS Pathog. , vol.4 , Issue.3 , pp. e1000020
    • Callaghan, M.J.1    Buckee, C.O.2    Jolley, K.A.3    Kriz, P.4    McJ, M.5    Gupta, S.6
  • 19
    • 32044466276 scopus 로고    scopus 로고
    • Characterization of group A streptococci (Streptococcus pyogenes): Correlation of M-protein and emm-gene type with T-protein agglutination pattern and serum opacity factor
    • Johnson DR, Kaplan EL, VanGheem A, Facklam RR, Beall B. Characterization of group A streptococci (Streptococcus pyogenes): correlation of M-protein and emm-gene type with T-protein agglutination pattern and serum opacity factor. J. Med. Microbiol. 55, 157-164 (2006).
    • (2006) J. Med. Microbiol. , vol.55 , pp. 157-164
    • Johnson, D.R.1    Kaplan, E.L.2    VanGheem, A.3    Facklam, R.R.4    Beall, B.5
  • 20
    • 0345580661 scopus 로고    scopus 로고
    • Group B streptococcal surface proteins as targets for protective antibodies: Identifcation of two novel proteins in strains of serotype v
    • Areschoug T, Stålhammar-Carlemalm M, Larsson C, Lindahl G. Group B streptococcal surface proteins as targets for protective antibodies: Identifcation of two novel proteins in strains of serotype V. Infect. Immun. 67(12), 6350-6357 (1999).
    • (1999) Infect. Immun. , vol.67 , Issue.12 , pp. 6350-6357
    • Areschoug, T.1    Stålhammar-Carlemalm, M.2    Larsson, C.3    Lindahl, G.4
  • 21
    • 41149171187 scopus 로고    scopus 로고
    • Superinfection as a driver of genomic diversifcation in antigenically variant pathogens
    • Futse JE, Brayton KA, Dark MJ, Knowles DP, Palmer GH. Superinfection as a driver of genomic diversifcation in antigenically variant pathogens. Proc. Natl Acad. Sci. USA 105(6), 2123-2127 (2008).
    • (2008) Proc. Natl Acad. Sci. USA , vol.105 , Issue.6 , pp. 2123-2127
    • Futse, J.E.1    Brayton, K.A.2    Dark, M.J.3    Knowles, D.P.4    Palmer, G.H.5
  • 22
    • 73949157089 scopus 로고    scopus 로고
    • Between-strain competition in acquisition and clearance of pneumococcal carriage-epidemiologic evidence from a longitudinal study of day-care children
    • Auranen K, Mehtälä J, Tanskanen A, S Kaltoft M. Between-strain competition in acquisition and clearance of pneumococcal carriage-epidemiologic evidence from a longitudinal study of day-care children. Am. J. Epidemiol. 171, 169-176 (2010).
    • (2010) Am. J. Epidemiol. , vol.171 , pp. 169-176
    • Auranen, K.1    Mehtälä, J.2    Tanskanen, A.3    Kaltoft M, S.4
  • 23
    • 84862120517 scopus 로고    scopus 로고
    • Estimating rates of carriage acquisition and clearance and competitive ability for pneumococcal serotypes in Kenya with a Markov transition model
    • Lipsitch M, Abdullahi O, D Amour A et al. Estimating rates of carriage acquisition and clearance and competitive ability for pneumococcal serotypes in Kenya with a Markov transition model. Epidemiology 23, 510-519 (2012).
    • (2012) Epidemiology , vol.23 , pp. 510-519
    • Lipsitch, M.1    Abdullahi, O.2    Amour A, D.3
  • 24
    • 0034659608 scopus 로고    scopus 로고
    • Competition among Streptococcus pneumoniae for intranasal colonization in a mouse model
    • Lipsitch M, Dykes JK, Johnson SE et al. Competition among Streptococcus pneumoniae for intranasal colonization in a mouse model. Vaccine 18, 2895-2901 (2000).
    • (2000) Vaccine , vol.18 , pp. 2895-2901
    • Lipsitch, M.1    Dykes, J.K.2    Johnson, S.E.3
  • 26
    • 84959054093 scopus 로고    scopus 로고
    • Commensal and pathogenic Escherichia coli metabolism in the gut
    • Conway T, Cohen PS. Commensal and pathogenic Escherichia coli metabolism in the gut. Microbiol. Spectr. (3), 1-15 (2015).
    • (2015) Microbiol. Spectr. , Issue.3 , pp. 1-15
    • Conway, T.1    Cohen, P.S.2
  • 27
    • 84870999292 scopus 로고    scopus 로고
    • Intestinal colonization resistance
    • Lawley TD, Walker AW. Intestinal colonization resistance. Immunology 138(1), 1-11 (2013).
    • (2013) Immunology , vol.138 , Issue.1 , pp. 1-11
    • Lawley, T.D.1    Walker, A.W.2
  • 28
    • 0025227905 scopus 로고
    • The colonization resistance of the digestive tract in different animal species and in man; A comparative study
    • Van der Waaij D, Van der Waaij BD. The colonization resistance of the digestive tract in different animal species and in man; a comparative study. Epidemiol. Infect. 105(2), 237-243 (1990).
    • (1990) Epidemiol. Infect. , vol.105 , Issue.2 , pp. 237-243
    • Van Der Waaij, D.1    Van Der Waaij, B.D.2
  • 29
    • 85013847663 scopus 로고    scopus 로고
    • Genetics and Evolution of Infectious Diseases
    • Elsevier, Oxford
    • Tibayrenc M. Genetics and Evolution of Infectious Diseases. Science Direct, Elsevier, Oxford (2011).
    • (2011) Science Direct
    • Tibayrenc, M.1
  • 30
    • 84925594814 scopus 로고    scopus 로고
    • A gene-by-gene population genomics platform: De novo assembly annotation and genealogical analysis of 108 representative Neisseria meningitidis genomes
    • Bratcher HB, Corton C, Jolley KA, Parkhill J, Maiden MCJ. A gene-by-gene population genomics platform: de novo assembly, annotation and genealogical analysis of 108 representative Neisseria meningitidis genomes. BMC Genomics 15, 1138 (2014).
    • (2014) BMC Genomics , vol.15 , pp. 1138
    • Bratcher, H.B.1    Corton, C.2    Jolley, K.A.3    Parkhill, J.4    Maiden, M.C.J.5
  • 32
    • 79955625067 scopus 로고    scopus 로고
    • Virulence evolution of the human pathogen Neisseria meningitidis by recombination in the core and accessory genome
    • Joseph B, Schwarz RF, Linke B et al. Virulence evolution of the human pathogen Neisseria meningitidis by recombination in the core and accessory genome. PLoS ONE 6(4), e18441 (2011).
    • (2011) PLoS ONE , vol.6 , Issue.4 , pp. e18441
    • Joseph, B.1    Schwarz, R.F.2    Linke, B.3
  • 33
    • 79959881708 scopus 로고    scopus 로고
    • Are pathogenic bacteria just looking for food? Metabolism and microbial pathogenesis
    • Rohmer L, Hocquet D, Miller SI. Are pathogenic bacteria just looking for food? Metabolism and microbial pathogenesis. Trends Microbiol. 19(7), 341-348 (2011).
    • (2011) Trends Microbiol. , vol.19 , Issue.7 , pp. 341-348
    • Rohmer, L.1    Hocquet, D.2    Miller, S.I.3
  • 34
    • 0036154795 scopus 로고    scopus 로고
    • Speed versus effciency in microbial growth and the role of parallel pathways
    • Helling RB. Speed versus effciency in microbial growth and the role of parallel pathways. J. Bacteriol. 184(4), 1041-1045 (2002).
    • (2002) J. Bacteriol. , vol.184 , Issue.4 , pp. 1041-1045
    • Helling, R.B.1
  • 35
    • 79959326367 scopus 로고    scopus 로고
    • The decoupling between genetic structure and metabolic phenotypes in Escherichia coli leads to continuous phenotypic diversity
    • Sabarly V, Bouvet O, Glodt J et al. The decoupling between genetic structure and metabolic phenotypes in Escherichia coli leads to continuous phenotypic diversity. J. Evol. Biol. 24(7), 1559-1571 (2011).
    • (2011) J. Evol. Biol. , vol.24 , Issue.7 , pp. 1559-1571
    • Sabarly, V.1    Bouvet, O.2    Glodt, J.3
  • 37
    • 46049089600 scopus 로고    scopus 로고
    • The role of complex carbohydrate catabolism in the pathogenesis of invasive streptococci
    • Shelburne SA, Davenport MT, Keith DB, Musser JM. The role of complex carbohydrate catabolism in the pathogenesis of invasive streptococci. Trends Microbiol. 16, 318-325 (2008).
    • (2008) Trends Microbiol. , vol.16 , pp. 318-325
    • Shelburne, S.A.1    Davenport, M.T.2    Keith, D.B.3    Musser, J.M.4
  • 38
    • 84867901259 scopus 로고    scopus 로고
    • Pneumococcal carbohydrate transport: Food for thought
    • Buckwalter CM, King SJ. Pneumococcal carbohydrate transport: food for thought. Trends Microbiol. 20, 517-522 (2012).
    • (2012) Trends Microbiol. , vol.20 , pp. 517-522
    • Buckwalter, C.M.1    King, S.J.2
  • 39
    • 84877829941 scopus 로고    scopus 로고
    • Microbial quest for food in vivo: "Nutritional virulence" as an emerging paradigm
    • Abu Kwaik Y, Bumann D. Microbial quest for food in vivo: "nutritional virulence" as an emerging paradigm. Cell Microbiol. 15, 882-890 (2013).
    • (2013) Cell Microbiol. , vol.15 , pp. 882-890
    • Abu Kwaik, Y.1    Bumann, D.2
  • 40
    • 59449104392 scopus 로고    scopus 로고
    • Global transcriptional profling reveals Streptococcus agalactiae genes controlled by the MtaR transcription factor
    • Bryan JD, Liles R, Cvek U, Trutschl M, Shelver D. Global transcriptional profling reveals Streptococcus agalactiae genes controlled by the MtaR transcription factor. BMC Genomics 9, 607 (2008).
    • (2008) BMC Genomics , vol.9 , pp. 607
    • Bryan, J.D.1    Liles, R.2    Cvek, U.3    Trutschl, M.4    Shelver, D.5
  • 41
    • 84907063977 scopus 로고    scopus 로고
    • A functional genomics catalogue of activated transcription factors during pathogenesis of pneumococcal disease
    • Mahdi LK, Deihimi T, Zamansani F et al. A functional genomics catalogue of activated transcription factors during pathogenesis of pneumococcal disease. BMC Genomics 15, 769 (2014).
    • (2014) BMC Genomics , vol.15 , pp. 769
    • Mahdi, L.K.1    Deihimi, T.2    Zamansani, F.3
  • 42
    • 84898842145 scopus 로고    scopus 로고
    • Escherichia coli pathotypes occupy distinct niches in the mouse intestine
    • Meador JP, Caldwell ME, Cohen PS, Conway T. Escherichia coli pathotypes occupy distinct niches in the mouse intestine. Infect. Immun. 82 (5), 1931-1938 (2014).
    • (2014) Infect. Immun. , vol.82 , Issue.5 , pp. 1931-1938
    • Meador, J.P.1    Caldwell, M.E.2    Cohen, P.S.3    Conway, T.4
  • 43
    • 73949111750 scopus 로고    scopus 로고
    • Bacterial competition: Surviving and thriving in the microbial jungle
    • Hibbing ME, Fuqua C, Parsek MR, Peterson SB. Bacterial competition: surviving and thriving in the microbial jungle. Nat. Rev. Microbiol. 8(1), 15-25 (2010).
    • (2010) Nat. Rev. Microbiol. , vol.8 , Issue.1 , pp. 15-25
    • Hibbing, M.E.1    Fuqua, C.2    Parsek, M.R.3    Peterson, S.B.4
  • 44
    • 0348225248 scopus 로고    scopus 로고
    • Factors determining the appearance of glucose in upper and lower respiratory tract secretions
    • Philips BJ, Meguer JX, Redman J, Baker EH. Factors determining the appearance of glucose in upper and lower respiratory tract secretions. Intensive Care Med. 29, 2204-2210 (2003).
    • (2003) Intensive Care Med. , vol.29 , pp. 2204-2210
    • Philips, B.J.1    Meguer, J.X.2    Redman, J.3    Baker, E.H.4
  • 45
    • 84959051388 scopus 로고    scopus 로고
    • Bacterial metabolism in the host environment: Pathogen growth and nutrient assimilation in the mammalian upper respiratory tract
    • Armstrong SK. Bacterial metabolism in the host environment: pathogen growth and nutrient assimilation in the mammalian upper respiratory tract. Microbiol. Spectr. 3(3), doi: 10.1128/microbiolspec.MBP-0007-2014 (2015).
    • (2015) Microbiol. Spectr. , vol.3 , Issue.3
    • Armstrong, S.K.1
  • 47
    • 33947186284 scopus 로고    scopus 로고
    • Metabolic diversity of the intestinal microbiota: Implications for health and disease
    • Blaut M, Clavel T. Metabolic diversity of the intestinal microbiota: implications for health and disease. J. Nutr. 137(3 Suppl. 2), S751-S755 (2007).
    • (2007) J. Nutr. , vol.137 , Issue.3 , pp. S751-S755
    • Blaut, M.1    Clavel, T.2
  • 48
    • 84901716155 scopus 로고    scopus 로고
    • From food to cell: Nutrient exploitation strategies of enteropathogens
    • Fuchs TM. From food to cell: nutrient exploitation strategies of enteropathogens. Microbiology 160, 1020-1039 (2014).
    • (2014) Microbiology , vol.160 , pp. 1020-1039
    • Fuchs, T.M.1
  • 49
    • 84858121089 scopus 로고    scopus 로고
    • A functional genomics approach to establish the complement of carbohydrate transporters in Streptococcus pneumoniae
    • Bidossi A, Mulas L, Decorosi F et al. A functional genomics approach to establish the complement of carbohydrate transporters in Streptococcus pneumoniae. PLoS ONE 7(3), e33320 (2012).
    • (2012) PLoS ONE , vol.7 , Issue.3 , pp. e33320
    • Bidossi, A.1    Mulas, L.2    Decorosi, F.3
  • 50
    • 84873561978 scopus 로고    scopus 로고
    • The ABC transporter encoded at the pneumococcal fructooligosaccharide utilization locus determines the ability to utilize long-and short-chain fructooligosaccharides
    • Linke CM, Woodiga SA, Meyers DJ, Buckwalter CM, Salhi HE, King SJ. The ABC transporter encoded at the pneumococcal fructooligosaccharide utilization locus determines the ability to utilize long-and short-chain fructooligosaccharides. J. Bacteriol. 195, 1031-1041 (2013).
    • (2013) J. Bacteriol. , vol.195 , pp. 1031-1041
    • Linke, C.M.1    Woodiga, S.A.2    Meyers, D.J.3    Buckwalter, C.M.4    Salhi, H.E.5    King, S.J.6
  • 51
    • 40749150035 scopus 로고    scopus 로고
    • Comparison of carbon nutrition for pathogenic and commensal Escherichia coli strains in the mouse intestine
    • Fabich AJ, Jones SA, Chowdhury FZ et al. Comparison of carbon nutrition for pathogenic and commensal Escherichia coli strains in the mouse intestine. Infect. Immun. 76(3), 1143-1152 (2008).
    • (2008) Infect. Immun. , vol.76 , Issue.3 , pp. 1143-1152
    • Fabich, A.J.1    Jones, S.A.2    Chowdhury, F.Z.3
  • 52
    • 84872517425 scopus 로고    scopus 로고
    • Nutritional basis for colonization resistance by human commensal Escherichia coli strains HS and Nissle 1917 against E. Coli O157:H7 in the mouse intestine
    • Maltby R, Leatham-Jensen MP, Gibson T, Cohen PS, Conway T. Nutritional basis for colonization resistance by human commensal Escherichia coli strains HS and Nissle 1917 against E. coli O157:H7 in the mouse intestine. PLoS ONE 8(1), e53957 (2013).
    • (2013) PLoS ONE , vol.8 , Issue.1 , pp. e53957
    • Maltby, R.1    Leatham-Jensen, M.P.2    Gibson, T.3    Cohen, P.S.4    Conway, T.5
  • 53
    • 70350010139 scopus 로고    scopus 로고
    • Differential recognition and hydrolysis of host carbohydrate antigens by Streptococcus pneumoniae family 98 glycoside hydrolases
    • Higgins MA, Whitworth GE, El Warry N et al. Differential recognition and hydrolysis of host carbohydrate antigens by Streptococcus pneumoniae family 98 glycoside hydrolases. J. Biol. Chem. 284, 26161-26173 (2009).
    • (2009) J. Biol. Chem. , vol.284 , pp. 26161-26173
    • Higgins, M.A.1    Whitworth, G.E.2    El Warry, N.3
  • 54
    • 67650659120 scopus 로고    scopus 로고
    • Epidemiological evidence for the role of the hemoglobin receptor, HmbR, in meningococcal virulence
    • Harrison OB, Evans NJ, Blair JM et al. Epidemiological evidence for the role of the hemoglobin receptor, HmbR, in meningococcal virulence. J. Infect. Dis. 200, 94-98 (2009).
    • (2009) J. Infect. Dis. , vol.200 , pp. 94-98
    • Harrison, O.B.1    Evans, N.J.2    Blair, J.M.3
  • 55
    • 34247199539 scopus 로고    scopus 로고
    • Deletion of fetA gene sequences in serogroup B and C Neisseria meningitidis isolates
    • Marsh JW, O'Leary MM, Shutt KA, Harrison LH. Deletion of fetA gene sequences in serogroup B and C Neisseria meningitidis isolates. J. Clin. Microbiol. 45, 1333-1335 (2007).
    • (2007) J. Clin. Microbiol. , vol.45 , pp. 1333-1335
    • Marsh, J.W.1    O'Leary, M.M.2    Shutt, K.A.3    Harrison, L.H.4
  • 56
    • 12144289598 scopus 로고    scopus 로고
    • Regulation and differential expression of gdhA encoding NADP-specifc glutamate dehydrogenase in Neisseria meningitidis clinical isolates
    • Pagliarulo C, Salvatore P, De Vitis LR et al. Regulation and differential expression of gdhA encoding NADP-specifc glutamate dehydrogenase in Neisseria meningitidis clinical isolates. Mol. Microbiol. 51, 1757-1772 (2004).
    • (2004) Mol. Microbiol. , vol.51 , pp. 1757-1772
    • Pagliarulo, C.1    Salvatore, P.2    De Vitis, L.R.3
  • 57
    • 0001836888 scopus 로고
    • Mechanisms that control the microfora in the large intestine
    • Academic Press, Inc., New York, NY, USA
    • Freter F. Mechanisms that control the microfora in the large intestine. In: Human Intestinal Microfora In Health And Disease. Academic Press, Inc., New York, NY, USA, 33-54 (1983).
    • (1983) Human Intestinal Microfora in Health and Disease , pp. 33-54
    • Freter, F.1
  • 58
    • 79959400835 scopus 로고    scopus 로고
    • Genotype and phenotypes of an intestine-adapted Escherichia coli K-12 mutant selected by animal passage for superior colonization
    • Fabich AJ, Leatham MP, Grissom JE et al. Genotype and phenotypes of an intestine-adapted Escherichia coli K-12 mutant selected by animal passage for superior colonization. Infect. Immun. 79(6), 2430-2439 (2011).
    • (2011) Infect. Immun. , vol.79 , Issue.6 , pp. 2430-2439
    • Fabich, A.J.1    Leatham, M.P.2    Grissom, J.E.3
  • 59
    • 84938815034 scopus 로고    scopus 로고
    • Vaccination drives changes in metabolic and virulence profles of Streptococcus pneumoniae
    • Watkins ER, Penman BS, Lourenço J, Buckee CO, Maiden MCJ, Gupta S. Vaccination drives changes in metabolic and virulence profles of Streptococcus pneumoniae. PLoS Pathog. 11(7), e1005034 (2015).
    • (2015) PLoS Pathog. , vol.11 , Issue.7 , pp. e1005034
    • Watkins, E.R.1    Penman, B.S.2    Lourenço, J.3    Buckee, C.O.4    McJ, M.5    Gupta, S.6
  • 60
    • 0031010869 scopus 로고    scopus 로고
    • Vaccination against colonizing bacteria with multiple serotypes
    • Lipsitch M. Vaccination against colonizing bacteria with multiple serotypes. Proc. Natl Acad. Sci. USA 94, 6571-6576 (1997).
    • (1997) Proc. Natl Acad. Sci. USA , vol.94 , pp. 6571-6576
    • Lipsitch, M.1
  • 61
    • 10444283458 scopus 로고    scopus 로고
    • The infuence of competition and vaccination on the coexistence of two pneumococcal serotypes
    • Zhang Y, Auranen K, Eichner M. The infuence of competition and vaccination on the coexistence of two pneumococcal serotypes. Epidemiol. Infect. 132(6), 1073-1081 (2004).
    • (2004) Epidemiol. Infect. , vol.132 , Issue.6 , pp. 1073-1081
    • Zhang, Y.1    Auranen, K.2    Eichner, M.3
  • 62
    • 7844228954 scopus 로고
    • Experimental analysis of vito volterra's mathematical theory of the struggle for existence
    • Gause GF. Experimental analysis of vito volterra's mathematical theory of the struggle for existence. Science 79, 16-17 (1934).
    • (1934) Science , vol.79 , pp. 16-17
    • Gause, G.F.1
  • 63
    • 4644237146 scopus 로고    scopus 로고
    • Distribution of surface protein variants among hyperinvasive meningococci: Implications for vaccine design
    • Urwin R, Russell JE, Thompson EAL, Holmes EC, Feavers IM, Maiden MCJ. Distribution of surface protein variants among hyperinvasive meningococci: Implications for vaccine design. Infect. Immun. 72, 5955-5962 (2004).
    • (2004) Infect. Immun. , vol.72 , pp. 5955-5962
    • Urwin, R.1    Russell, J.E.2    Eal, T.3    Holmes, E.C.4    Feavers, I.M.5    Maiden, M.C.J.6
  • 64
    • 0023185906 scopus 로고
    • Genetic-structure of neisseria-meningitidis populations in relation to serogroup, serotype, and outer-membrane protein pattern
    • Caugant DA, Mocca LF, Frasch CE, Froholm LO, Zollinger WD, Selander RK. Genetic-structure of neisseria-meningitidis populations in relation to serogroup, serotype, and outer-membrane protein pattern. J. Bacteriol. 169, 2781-2792 (1987).
    • (1987) J. Bacteriol. , vol.169 , pp. 2781-2792
    • Caugant, D.A.1    Mocca, L.F.2    Frasch, C.E.3    Froholm, L.O.4    Zollinger, W.D.5    Selander, R.K.6
  • 65
    • 84878152623 scopus 로고    scopus 로고
    • An analysis of the sequence variability of meningococcal fHbp, NadA and NHBA over a 50-year period in the Netherlands
    • Bambini S, Piet J, Muzzi A et al. An analysis of the sequence variability of meningococcal fHbp, NadA and NHBA over a 50-year period in The Netherlands. PLoS ONE 8(5), e65043 (2013).
    • (2013) PLoS ONE , vol.8 , Issue.5 , pp. e65043
    • Bambini, S.1    Piet, J.2    Muzzi, A.3
  • 66
    • 71449128303 scopus 로고    scopus 로고
    • Genetic diversity and stability of the porA allele as a genetic marker in human Campylobacter infection
    • Cody AJ, Maiden MJC, Dingle KE. Genetic diversity and stability of the porA allele as a genetic marker in human Campylobacter infection. Microbiology 155 (Pt 12), 4145-4154 (2009).
    • (2009) Microbiology , vol.155 , pp. 4145-4154
    • Cody, A.J.1    Mjc, M.2    Dingle, K.E.3
  • 68
    • 38949178833 scopus 로고    scopus 로고
    • Comparison of seven techniques for typing international epidemic strains of Clostridium diffcile: Restriction endonuclease analysis, pulsed-feld gel electrophoresis, PCR-ribotyping, multilocus variable-number tandem-repeat analysis, amplifed fragment length polymorphism, and surface layer protein A gene sequence typing
    • Killgore G, Thompson A, Johnson S et al. Comparison of seven techniques for typing international epidemic strains of Clostridium diffcile: restriction endonuclease analysis, pulsed-feld gel electrophoresis, PCR-ribotyping, multilocus variable-number tandem-repeat analysis, amplifed fragment length polymorphism, and surface layer protein A gene sequence typing. J. Clin. Microbiol. 46(2), 431-437 (2008).
    • (2008) J. Clin. Microbiol. , vol.46 , Issue.2 , pp. 431-437
    • Killgore, G.1    Thompson, A.2    Johnson, S.3
  • 69
    • 77952168929 scopus 로고    scopus 로고
    • Evolutionary dynamics of Clostridium diffcile over short and long time scales
    • He M, Sebaihia M, Lawley TD et al. Evolutionary dynamics of Clostridium diffcile over short and long time scales. Proc. Natl Acad. Sci. USA 107, 7527-7532 (2010).
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 7527-7532
    • He, M.1    Sebaihia, M.2    Lawley, T.D.3
  • 70
    • 69949106201 scopus 로고    scopus 로고
    • A trilocus sequence typing scheme for hospital epidemiology and subspecies differentiation of an important nosocomial pathogen, Enterococcus faecalis
    • Chowdhury SA, Arias CA, Nallapareddy SR, Reyes J, Willems RJL, Murray BE. A trilocus sequence typing scheme for hospital epidemiology and subspecies differentiation of an important nosocomial pathogen, Enterococcus faecalis. J. Clin. Microbiol. 47, 2713-2719 (2009).
    • (2009) J. Clin. Microbiol. , vol.47 , pp. 2713-2719
    • Chowdhury, S.A.1    Arias, C.A.2    Nallapareddy, S.R.3    Reyes, J.4    Rjl, W.5    Murray, B.E.6
  • 71
    • 84890547166 scopus 로고    scopus 로고
    • Recent recombination events in the core genome are associated with adaptive evolution in Enterococcus faecium
    • de Been M, van Schaik W, Cheng L, Corander J, Willems RJ. Recent recombination events in the core genome are associated with adaptive evolution in Enterococcus faecium. Genome Biol. Evol. 5(8), 1524-1535 (2013).
    • (2013) Genome Biol. Evol. , vol.5 , Issue.8 , pp. 1524-1535
    • De Been, M.1    Van Schaik, W.2    Cheng, L.3    Corander, J.4    Willems, R.J.5
  • 72
    • 0029073796 scopus 로고
    • Clonal relationships among blood-stream isolates of Escherichia-coli
    • Maslow JN, Whittam TS, Gilks CF et al. Clonal relationships among blood-stream isolates of Escherichia-coli. Infect. Immun. 63, 2409-2417 (1995).
    • (1995) Infect. Immun. , vol.63 , pp. 2409-2417
    • Maslow, J.N.1    Whittam, T.S.2    Gilks, C.F.3
  • 73
    • 33745282930 scopus 로고    scopus 로고
    • Sex and virulence in Escherichia coli: An evolutionary perspective
    • Wirth T, Falush D, Lan RT et al. Sex and virulence in Escherichia coli: an evolutionary perspective. Mol. Microbiol. 60, 1136-1151 (2006).
    • (2006) Mol. Microbiol. , vol.60 , pp. 1136-1151
    • Wirth, T.1    Falush, D.2    Lan, R.T.3
  • 75
    • 79960936369 scopus 로고    scopus 로고
    • Transformation of natural genetic variation into Haemophilus infuenzae genomes
    • Mell JC, Shumilina S, Hall IM, Redfeld RJ. Transformation of natural genetic variation into Haemophilus infuenzae genomes. PLoS Pathog. 7(7), e1002151 (2011).
    • (2011) PLoS Pathog. , vol.7 , Issue.7 , pp. e1002151
    • Mell, J.C.1    Shumilina, S.2    Hall, I.M.3    Redfeld, R.J.4
  • 76
    • 12444303202 scopus 로고    scopus 로고
    • Characterization of encapsulated and noncapsulated Haemophilus infuenzae and determination of phylogenetic relationships by multilocus sequence typing
    • Meats E, Feil EJ, Stringer S et al. Characterization of encapsulated and noncapsulated Haemophilus infuenzae and determination of phylogenetic relationships by multilocus sequence typing. J. Clin. Microbiol. 41, 1623-1636 (2003).
    • (2003) J. Clin. Microbiol. , vol.41 , pp. 1623-1636
    • Meats, E.1    Feil, E.J.2    Stringer, S.3
  • 77
    • 53749091581 scopus 로고    scopus 로고
    • Comparison of PFGE and multilocus sequence typing for analysis of Klebsiella pneumoniae isolates
    • Vimont S, Mnif B, Fevre C, Brisse S. Comparison of PFGE and multilocus sequence typing for analysis of Klebsiella pneumoniae isolates. J. Med. Microbiol. 57, 1308-1310 (2008).
    • (2008) J. Med. Microbiol. , vol.57 , pp. 1308-1310
    • Vimont, S.1    Mnif, B.2    Fevre, C.3    Brisse, S.4
  • 78
    • 63449117143 scopus 로고    scopus 로고
    • Virulent clones of Klebsiella pneumoniae: Identifcation and evolutionary scenario based on genomic and phenotypic characterization
    • Brisse S, Fevre C, Passet V et al. Virulent clones of Klebsiella pneumoniae: identifcation and evolutionary scenario based on genomic and phenotypic characterization. PLoS ONE 4(3), e4982 (2009).
    • (2009) PLoS ONE , vol.4 , Issue.3 , pp. e4982
    • Brisse, S.1    Fevre, C.2    Passet, V.3
  • 79
    • 0001080878 scopus 로고
    • Genetic-characterization of clones of the bacterium listeria-monocytogenes causing epidemic disease
    • Piffaretti JC, Kressebuch H, Aeschbacher M et al. Genetic-characterization of clones of the bacterium listeria-monocytogenes causing epidemic disease. Proc. Natl Acad. Sci. USA 86, 3818-3822 (1989).
    • (1989) Proc. Natl Acad. Sci. USA , vol.86 , pp. 3818-3822
    • Piffaretti, J.C.1    Kressebuch, H.2    Aeschbacher, M.3
  • 81
    • 63049093141 scopus 로고    scopus 로고
    • Relative contributions of recombination and mutation to the diversifcation of the opa gene repertoire of Neisseria gonorrhoeae
    • Bilek N, Ison CA, Spratt BG. Relative contributions of recombination and mutation to the diversifcation of the opa gene repertoire of Neisseria gonorrhoeae. J. Bacteriol. 191, 1878-1890 (2009).
    • (2009) J. Bacteriol. , vol.191 , pp. 1878-1890
    • Bilek, N.1    Ison, C.A.2    Spratt, B.G.3
  • 82
    • 0027332184 scopus 로고
    • Genetic-structure of neisseria-gonorrhoeae populations - A non-clonal pathogen
    • Orourke M, Stevens E. Genetic-structure of neisseria-gonorrhoeae populations-a non-clonal pathogen. J. Gen. Microbiol. 139, 2603-2611 (1993).
    • (1993) J. Gen. Microbiol. , vol.139 , pp. 2603-2611
    • Orourke, M.1    Stevens, E.2
  • 84
    • 0035012347 scopus 로고    scopus 로고
    • Genetic diversity of Neisseria lactamica strains from epidemiologically defned carriers
    • Alber D, Oberkotter M, Suerbaum S, Claus H, Frosch M, Vogel U. Genetic diversity of Neisseria lactamica strains from epidemiologically defned carriers. J. Clin. Microbiol. 39, 1710-1715 (2001).
    • (2001) J. Clin. Microbiol. , vol.39 , pp. 1710-1715
    • Alber, D.1    Oberkotter, M.2    Suerbaum, S.3    Claus, H.4    Frosch, M.5    Vogel, U.6
  • 85
    • 71449107073 scopus 로고    scopus 로고
    • Variation of the factor H-binding protein of Neisseria meningitidis
    • Brehony C, Wilson DJ, Maiden MCJ. Variation of the factor H-binding protein of Neisseria meningitidis. Microbiol. SGM 155, 4155-4169 (2009).
    • (2009) Microbiol. SGM , vol.155 , pp. 4155-4169
    • Brehony, C.1    Wilson, D.J.2    Maiden, M.C.J.3
  • 86
    • 33748074140 scopus 로고    scopus 로고
    • Opacity-associated adhesin repertoire in hyperinvasive Neisseria meningitidis
    • Callaghan MJ, Jolley KA, Maiden MCJ. Opacity-associated adhesin repertoire in hyperinvasive Neisseria meningitidis. Infect. Immun. 74, 5085-5094 (2006).
    • (2006) Infect. Immun. , vol.74 , pp. 5085-5094
    • Callaghan, M.J.1    Jolley, K.A.2    Maiden, M.C.J.3
  • 87
    • 0030840531 scopus 로고    scopus 로고
    • Genetic relationships among Pasteurella trehalosi isolates based on multilocus enzyme electrophoresis
    • Davies RL, Arkinsaw S, Selander RK. Genetic relationships among Pasteurella trehalosi isolates based on multilocus enzyme electrophoresis. Microbiology-UK 143, 2841-2849 (1997).
    • (1997) Microbiology-UK , vol.143 , pp. 2841-2849
    • Davies, R.L.1    Arkinsaw, S.2    Selander, R.K.3
  • 88
    • 0036135496 scopus 로고    scopus 로고
    • Mosaic structure and molecular evolution of the leukotoxin operon (lktCABD) in mannheimia (Pasteurella) haemolytica Mannheimia glucosida and Pasteurella trehalosi
    • Davies RL, Campbell S, Whittam TS. Mosaic structure and molecular evolution of the leukotoxin operon (lktCABD) in mannheimia (Pasteurella) haemolytica, Mannheimia glucosida, and Pasteurella trehalosi. J. Bacteriol. 184, 266-277 (2002).
    • (2002) J. Bacteriol. , vol.184 , pp. 266-277
    • Davies, R.L.1    Campbell, S.2    Whittam, T.S.3
  • 89
    • 84864059917 scopus 로고    scopus 로고
    • Multilocus sequence typing as a replacement for serotyping in Salmonella enterica
    • Achtman M, Wain J, Weill F-X et al. Multilocus sequence typing as a replacement for serotyping in Salmonella enterica. PLoS Pathog. 8(6), e100277 (2012).
    • (2012) PLoS Pathog. , vol.8 , Issue.6 , pp. e100277
    • Achtman, M.1    Wain, J.2    Weill, F.-X.3
  • 90
    • 79960935954 scopus 로고    scopus 로고
    • Recombination and population structure in Salmonella enterica
    • Didelot X, Bowden R, Street T et al. Recombination and population structure in Salmonella enterica. PLoS Genet. 7(7), e1002191 (2011).
    • (2011) PLoS Genet. , vol.7 , Issue.7 , pp. e1002191
    • Didelot, X.1    Bowden, R.2    Street, T.3
  • 91
    • 84862908088 scopus 로고    scopus 로고
    • Challenges for the evaluation of Staphylococcus aureus protein based vaccines monitoring antigenic diversity
    • Murphy E, Lin SL, Nunez L et al. Challenges for the evaluation of Staphylococcus aureus protein based vaccines monitoring antigenic diversity. Hum. Vaccin. 7, 51-59 (2011).
    • (2011) Hum. Vaccin. , vol.7 , pp. 51-59
    • Murphy, E.1    Lin, S.L.2    Nunez, L.3
  • 92
    • 84901447320 scopus 로고    scopus 로고
    • Mobile elements drive recombination hotspots in the core genome of Staphylococcus aureus
    • Everitt RG, Didelot X, Batty EM et al. Mobile elements drive recombination hotspots in the core genome of Staphylococcus aureus. Nat. Commun. 5, 3956 (2014).
    • (2014) Nat. Commun. , vol.5 , pp. 3956
    • Everitt, R.G.1    Didelot, X.2    Batty, E.M.3
  • 93
    • 84896695748 scopus 로고    scopus 로고
    • Population structure of methicillin-susceptible Staphylococcus aureus (MSSA) in Portugal over a 19-year period (1992-2011)
    • Tavares A, Faria NA, de Lencastre H, Miragaia M. Population structure of methicillin-susceptible Staphylococcus aureus (MSSA) in Portugal over a 19-year period (1992-2011). Eur. J. Clin. Microbiol. Infect. Dis. 33, 423-432 (2014).
    • (2014) Eur. J. Clin. Microbiol. Infect. Dis. , vol.33 , pp. 423-432
    • Tavares, A.1    Faria, N.A.2    De Lencastre, H.3    Miragaia, M.4
  • 94
    • 0031764441 scopus 로고    scopus 로고
    • A multilocus sequence typing scheme for Streptococcus pneumoniae: Identifcation of clones associated with serious invasive disease
    • Enright MC, Spratt BG. A multilocus sequence typing scheme for Streptococcus pneumoniae: identifcation of clones associated with serious invasive disease. Microbiology 144(Pt 11), 3049-3060 (1998).
    • (1998) Microbiology , vol.144 , pp. 3049-3060
    • Enright, M.C.1    Spratt, B.G.2
  • 95
    • 84895858474 scopus 로고    scopus 로고
    • Dense genomic sampling identifes highways of pneumococcal recombination
    • Chewapreecha C, Harris SR, Croucher NJ et al. Dense genomic sampling identifes highways of pneumococcal recombination. Nat. Genet. 46(3), 305-309 (2014).
    • (2014) Nat. Genet. , vol.46 , Issue.3 , pp. 305-309
    • Chewapreecha, C.1    Harris, S.R.2    Croucher, N.J.3
  • 96
    • 3042662429 scopus 로고    scopus 로고
    • Multilocus sequence typing of Streptococcus pyogenes representing most known emm types and distinctions among subpopulation genetic structures
    • McGregor KF, Spratt BG, Kalia A et al. Multilocus sequence typing of Streptococcus pyogenes representing most known emm types and distinctions among subpopulation genetic structures. J. Bacteriol. 186, 4285-4294 (2004).
    • (2004) J. Bacteriol. , vol.186 , pp. 4285-4294
    • McGregor, K.F.1    Spratt, B.G.2    Kalia, A.3
  • 97
    • 68649094454 scopus 로고    scopus 로고
    • Population biology of the human restricted pathogen, Streptococcus pyogenes
    • Bessen DE. Population biology of the human restricted pathogen, Streptococcus pyogenes. Infect. Genet. Evol. 9, 581-593 (2009).
    • (2009) Infect. Genet. Evol. , vol.9 , pp. 581-593
    • Bessen, D.E.1
  • 98
    • 0035082969 scopus 로고    scopus 로고
    • Multilocus sequence typing of Streptococcus pyogenes and the relationships between emm type and clone
    • Enright MC, Spratt BG, Kalia A, Cross JH, Bessen DE. Multilocus sequence typing of Streptococcus pyogenes and the relationships between emm type and clone. Infect. Immun. 69, 2416-2427 (2001).
    • (2001) Infect. Immun. , vol.69 , pp. 2416-2427
    • Enright, M.C.1    Spratt, B.G.2    Kalia, A.3    Cross, J.H.4    Bessen, D.E.5
  • 99
    • 85003724738 scopus 로고    scopus 로고
    • PubMed.gov
    • PubMed.gov. www.ncbi.nlm.nih.gov/pubmed
  • 100
    • 85003762387 scopus 로고    scopus 로고
    • PubML ST
    • PubML ST. http://pubmlst.net
  • 101
    • 58049202235 scopus 로고    scopus 로고
    • Fine-scale phylogeographic structure of Borrelia lusitaniae revealed by multilocus sequence typing
    • Victorino LR, Margos G, Feil EJ, Collares-Pereira M, Zé-Zé L, Kurtenbach K. Fine-scale phylogeographic structure of Borrelia lusitaniae revealed by multilocus sequence typing. PLoS ONE 3(12), e4002 (2008).
    • (2008) PLoS ONE , vol.3 , Issue.12 , pp. e4002
    • Victorino, L.R.1    Margos, G.2    Feil, E.J.3    Collares-Pereira, M.4    Zé-Zé, L.5    Kurtenbach, K.6
  • 102
    • 79952711441 scopus 로고    scopus 로고
    • Neisseria meningitidis is structured in clades associated with restriction modifcation systems that modulate homologous recombination
    • Budroni S, Siena E, Hotopp JCD et al. Neisseria meningitidis is structured in clades associated with restriction modifcation systems that modulate homologous recombination. Proc. Natl Acad. Sci. USA 108, 4494-4499 (2011).
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 4494-4499
    • Budroni, S.1    Siena, E.2    Jcd, H.3
  • 103
    • 84926308364 scopus 로고    scopus 로고
    • Selective and genetic constraints on pneumococcal serotype switching
    • Croucher N, Kagedan L, Thompson CM et al. Selective and genetic constraints on pneumococcal serotype switching. PLoS Genet. 11(3), e1005095 (2015).
    • (2015) PLoS Genet. , vol.11 , Issue.3 , pp. e1005095
    • Croucher, N.1    Kagedan, L.2    Thompson, C.M.3
  • 104
    • 0038555738 scopus 로고    scopus 로고
    • Clonal relationships between invasive and carriage Streptococcus pneumoniae and serotype-and clone-specifc differences in invasive disease potential
    • Brueggemann AB, Griffths DT, Meats E, Peto T, Crook DW, Spratt BG. Clonal relationships between invasive and carriage Streptococcus pneumoniae and serotype-and clone-specifc differences in invasive disease potential. J. Infect. Dis. 187, 1424-1432 (2003).
    • (2003) J. Infect. Dis. , vol.187 , pp. 1424-1432
    • Brueggemann, A.B.1    Griffths, D.T.2    Meats, E.3    Peto, T.4    Crook, D.W.5    Spratt, B.G.6
  • 105
    • 11144258643 scopus 로고    scopus 로고
    • Invasiveness of serotypes and clones of Streptococcus pneumoniae among children in Finland
    • Hanage WP, Kaijalainen TH, Syrjanen RK et al. Invasiveness of serotypes and clones of Streptococcus pneumoniae among children in Finland. Infect. Immun. 73, 431-435 (2005).
    • (2005) Infect. Immun. , vol.73 , pp. 431-435
    • Hanage, W.P.1    Kaijalainen, T.H.2    Syrjanen, R.K.3
  • 106
    • 84873493253 scopus 로고    scopus 로고
    • A single multilocus sequence typing (MLST) scheme for seven pathogenic leptospira species
    • Boonsilp S, Thaipadungpanit J, Amornchai P et al. A single multilocus sequence typing (MLST) scheme for seven pathogenic leptospira species. PLoS Negl. Trop. Dis. 7(1), e1954 (2013).
    • (2013) PLoS Negl. Trop. Dis. , vol.7 , Issue.1 , pp. e1954
    • Boonsilp, S.1    Thaipadungpanit, J.2    Amornchai, P.3
  • 107
    • 0023628618 scopus 로고
    • Molecular epidemiology of Legionella species by restriction endonuclease and alloenzyme analysis
    • Tompkins LS, Troup NJ, Woods T, Bibb W, McKinney RM. Molecular epidemiology of Legionella species by restriction endonuclease and alloenzyme analysis. J. Clin. Microbiol. 25(10), 1875-1880 (1987).
    • (1987) J. Clin. Microbiol. , vol.25 , Issue.10 , pp. 1875-1880
    • Tompkins, L.S.1    Troup, N.J.2    Woods, T.3    Bibb, W.4    McKinney, R.M.5
  • 108
    • 77952957949 scopus 로고    scopus 로고
    • Multidrug-resistant epidemic clones among bloodstream isolates of Pseudomonas aeruginosa in the Czech Republic
    • Nemec A, Krizova L, Maixnerova M, Musilek M. Multidrug-resistant epidemic clones among bloodstream isolates of Pseudomonas aeruginosa in the Czech Republic. Res. Microbiol. 161(3), 234-242 (2010).
    • (2010) Res. Microbiol. , vol.161 , Issue.3 , pp. 234-242
    • Nemec, A.1    Krizova, L.2    Maixnerova, M.3    Musilek, M.4
  • 109
    • 0038519412 scopus 로고    scopus 로고
    • Multilocus sequence typing system for group B Streptococcus
    • Jones N, Bohnsack JF, Takahashi S et al. Multilocus sequence typing system for group B Streptococcus. J. Clin. Microbiol. 41(6), 2530-2536 (2003).
    • (2003) J. Clin. Microbiol. , vol.41 , Issue.6 , pp. 2530-2536
    • Jones, N.1    Bohnsack, J.F.2    Takahashi, S.3
  • 110
    • 53649084492 scopus 로고    scopus 로고
    • Molecular characterization of human-colonizing Streptococcus agalactiae strains isolated from throat, skin, anal margin, and genital body sites
    • Van Der Mee-Marquet N, Fourny L, Arnault L et al. Molecular characterization of human-colonizing Streptococcus agalactiae strains isolated from throat, skin, anal margin, and genital body sites. J. Clin. Microbiol. 46(9), 2906-2911 (2008).
    • (2008) J. Clin. Microbiol. , vol.46 , Issue.9 , pp. 2906-2911
    • Van Der Mee-Marquet, N.1    Fourny, L.2    Arnault, L.3
  • 111
    • 0033598784 scopus 로고    scopus 로고
    • Yersinia pestis, the cause of plague, is a recently emerged clone of Yersinia pseudotuberculosis
    • Achtman M, Zurth K, Morelli G, Torrea G, Guiyoule A, Carniel E. Yersinia pestis, the cause of plague, is a recently emerged clone of Yersinia pseudotuberculosis. Proc. Natl Acad. Sci. USA 96(24), 14043-14048 (1999).
    • (1999) Proc. Natl Acad. Sci. USA , vol.96 , Issue.24 , pp. 14043-14048
    • Achtman, M.1    Zurth, K.2    Morelli, G.3    Torrea, G.4    Guiyoule, A.5    Carniel, E.6
  • 112
    • 48949117595 scopus 로고    scopus 로고
    • On the origin of the treponematoses: A phylogenetic approach
    • Harper KN, Ocampo PS, Steiner BM et al. On the origin of the treponematoses: a phylogenetic approach. PLoS Negl. Trop. Dis. 2(1), e148 (2008).
    • (2008) PLoS Negl. Trop. Dis. , vol.2 , Issue.1 , pp. e148
    • Harper, K.N.1    Ocampo, P.S.2    Steiner, B.M.3
  • 114
    • 36349028084 scopus 로고    scopus 로고
    • Genetic diversity of the obligate intracellular bacterium Chlamydophila pneumoniae by genome-wide analysis of single nucleotide polymorphisms: Evidence for highly clonal population structure
    • Rattei T, Ott S, Gutacker M et al. Genetic diversity of the obligate intracellular bacterium Chlamydophila pneumoniae by genome-wide analysis of single nucleotide polymorphisms: evidence for highly clonal population structure. BMC Genomics 8, 355 (2007).
    • (2007) BMC Genomics , vol.8 , pp. 355
    • Rattei, T.1    Ott, S.2    Gutacker, M.3
  • 115
    • 0030931719 scopus 로고    scopus 로고
    • Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination
    • Sreevatsan S, Pan X, Stockbauer KE et al. Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination. Proc. Natl Acad. Sci. USA 94, 9869-9874 (1997).
    • (1997) Proc. Natl Acad. Sci. USA , vol.94 , pp. 9869-9874
    • Sreevatsan, S.1    Pan, X.2    Stockbauer, K.E.3
  • 116
    • 80054093790 scopus 로고    scopus 로고
    • Serotype replacement in disease after pneumococcal vaccination
    • Weinberger DM, Malley R, Lipsitch M. Serotype replacement in disease after pneumococcal vaccination. Lancet 378, 1962-1973 (2011).
    • (2011) Lancet , vol.378 , pp. 1962-1973
    • Weinberger, D.M.1    Malley, R.2    Lipsitch, M.3
  • 117
    • 33644917475 scopus 로고    scopus 로고
    • Pre-and postvaccination clonal compositions of invasive pneumococcal serotypes for isolates collected in the United States in 1999, 2001, and 2002
    • Beall B, McEllistrem MC, Gertz RE et al. Pre-and postvaccination clonal compositions of invasive pneumococcal serotypes for isolates collected in the United States in 1999, 2001, and 2002. J. Clin. Microbiol. 44, 999-1017 (2006).
    • (2006) J. Clin. Microbiol. , vol.44 , pp. 999-1017
    • Beall, B.1    McEllistrem, M.C.2    Gertz, R.E.3
  • 118
    • 74549202659 scopus 로고    scopus 로고
    • Genome-wide dissection of globally emergent multi-drug resistant serotype 19A Streptococcus pneumoniae
    • Pillai DR, Shahinas D, Buzina A et al. Genome-wide dissection of globally emergent multi-drug resistant serotype 19A Streptococcus pneumoniae. BMC Genomics 10, 642 (2009).
    • (2009) BMC Genomics , vol.10 , pp. 642
    • Pillai, D.R.1    Shahinas, D.2    Buzina, A.3
  • 119
    • 84866615007 scopus 로고    scopus 로고
    • Evolving picture of invasive pneumococcal disease in Massachusetts children: A comparison of disease in 2007-2009 with earlier periods
    • Yildirim I, Stevenson A, Hsu KK, Pelton SI. Evolving picture of invasive pneumococcal disease in massachusetts children: a comparison of disease in 2007-2009 with earlier periods. Pediatr. Infect. Dis. J. 31, 1016-1021 (2012).
    • (2012) Pediatr. Infect. Dis. J. , vol.31 , pp. 1016-1021
    • Yildirim, I.1    Stevenson, A.2    Hsu, K.K.3    Pelton, S.I.4
  • 120
    • 84857655371 scopus 로고    scopus 로고
    • Pneumococcal genome sequencing tracks a vaccine escape variant formed through a multi-fragment recombination event
    • Golubchik T, Brueggemann AB, Street T et al. Pneumococcal genome sequencing tracks a vaccine escape variant formed through a multi-fragment recombination event. Nat. Genet. 44, 352-355 (2012).
    • (2012) Nat. Genet. , vol.44 , pp. 352-355
    • Golubchik, T.1    Brueggemann, A.B.2    Street, T.3
  • 121
    • 37349058158 scopus 로고    scopus 로고
    • Vaccine escape recombinants emerge after pneumococcal vaccination in the United States
    • Brueggemann AB, Pai R, Crook DW, Beall B. Vaccine escape recombinants emerge after pneumococcal vaccination in the united states. PLoS Pathog. 3, 1628-1636 (2007).
    • (2007) PLoS Pathog. , vol.3 , pp. 1628-1636
    • Brueggemann, A.B.1    Pai, R.2    Crook, D.W.3    Beall, B.4
  • 122
    • 84878735463 scopus 로고    scopus 로고
    • Population genomics of post-vaccine changes in pneumococcal epidemiology
    • Croucher NJ, Finkelstein J A, Pelton SI et al. Population genomics of post-vaccine changes in pneumococcal epidemiology. Nat. Genet. 45(6), 656-663 (2013).
    • (2013) Nat. Genet. , vol.45 , Issue.6 , pp. 656-663
    • Croucher, N.J.1    Finkelstein, J.A.2    Pelton, S.I.3
  • 123
    • 77952695187 scopus 로고    scopus 로고
    • Increase in Pilus Islet 2-encoded Pili among Streptococcus pneumoniae Isolates, Atlanta, Georgia, USA
    • Zahner D, Gudlavalleti A, Stephens DS. Increase in Pilus Islet 2-encoded Pili among Streptococcus pneumoniae Isolates, Atlanta, Georgia, USA. Emerg. Infect. Dis. 16, 955-962 (2010).
    • (2010) Emerg. Infect. Dis. , vol.16 , pp. 955-962
    • Zahner, D.1    Gudlavalleti, A.2    Stephens, D.S.3
  • 124
    • 67650080596 scopus 로고    scopus 로고
    • Precolonized human commensal Escherichia coli strains serve as a barrier to E. Coli O157:H7 growth in the streptomycin-treated mouse intestine
    • Leatham MP, Banerjee S, Autieri SM, Mercado-Lubo R, Conway T, Cohen PS. Precolonized human commensal Escherichia coli strains serve as a barrier to E. coli O157:H7 growth in the streptomycin-treated mouse intestine. Infect. Immun. 77(7), 2876-2886 (2009).
    • (2009) Infect. Immun. , vol.77 , Issue.7 , pp. 2876-2886
    • Leatham, M.P.1    Banerjee, S.2    Autieri, S.M.3    Mercado-Lubo, R.4    Conway, T.5    Cohen, P.S.6
  • 125
    • 84934440446 scopus 로고    scopus 로고
    • Examination of Staphylococcus epidermidis bioflms using fow-cell technology
    • Moormeier DE, Bayles KW. Examination of Staphylococcus epidermidis bioflms using fow-cell technology. Methods Mol. Biol. 1106, 143-155 (2014).
    • (2014) Methods Mol. Biol. , vol.1106 , pp. 143-155
    • Moormeier, D.E.1    Bayles, K.W.2
  • 126
    • 84908291385 scopus 로고    scopus 로고
    • Multisubstrate isotope labeling and metagenomic analysis of active soil bacterial communities
    • Verastegui Y, Cheng J, Engel K et al. Multisubstrate isotope labeling and metagenomic analysis of active soil bacterial communities. MBio 5(4), e01157-e01114 (2014).
    • (2014) MBio , vol.5 , Issue.4 , pp. e01114-e01157
    • Verastegui, Y.1    Cheng, J.2    Engel, K.3
  • 127
    • 84927158514 scopus 로고    scopus 로고
    • Phenotypic heterogeneity in metabolic traits among single cells of a rare bacterial species in its natural environment quantifed with a combination of fow cell sorting and NanoSIMS
    • Zimmermann M, Escrig S, Hübschmann T et al. Phenotypic heterogeneity in metabolic traits among single cells of a rare bacterial species in its natural environment quantifed with a combination of fow cell sorting and NanoSIMS. Front. Microbiol. 6, 243 (2015).
    • (2015) Front. Microbiol. , vol.6 , pp. 243
    • Zimmermann, M.1    Escrig, S.2    Hübschmann, T.3
  • 128
    • 56449131373 scopus 로고    scopus 로고
    • Modeling Neisseria meningitidis B metabolism at different specifc growth rates
    • Baart GJE, Willemsen M, Khatami E et al. Modeling Neisseria meningitidis B metabolism at different specifc growth rates. Biotechnol. Bioeng. 101, 1022-1035 (2008).
    • (2008) Biotechnol. Bioeng. , vol.101 , pp. 1022-1035
    • Gje, B.1    Willemsen, M.2    Khatami, E.3
  • 129
    • 79953739461 scopus 로고    scopus 로고
    • Transcriptome analysis of bacterial pathogens in vivo: Problems and solutions
    • Skvortsov TA, Azhikina TL. [Transcriptome analysis of bacterial pathogens in vivo: problems and solutions]. Bioorg. Khim. 36(5), 596-606 (2010).
    • (2010) Bioorg. Khim. , vol.36 , Issue.5 , pp. 596-606
    • Skvortsov, T.A.1    Azhikina, T.L.2
  • 130
    • 84887255689 scopus 로고    scopus 로고
    • Probing bacterial metabolism during infection using high-resolution transcriptomics
    • Jorth P, Trivedi U, Rumbaugh K, Whiteley M. Probing bacterial metabolism during infection using high-resolution transcriptomics. J. Bacteriol. 195(22), 4991-4998 (2013).
    • (2013) J. Bacteriol. , vol.195 , Issue.22 , pp. 4991-4998
    • Jorth, P.1    Trivedi, U.2    Rumbaugh, K.3    Whiteley, M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.