메뉴 건너뛰기




Volumn 25, Issue 20, 2016, Pages 4419-4431

Model systems of DUX4 expression recapitulate the transcriptional profile of FSHD cells

Author keywords

[No Author keywords available]

Indexed keywords

DOXYCYCLINE; PUROMYCIN; RNA; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR DUX4; UNCLASSIFIED DRUG; DUX4 PROTEIN, HUMAN; HOMEODOMAIN PROTEIN; TRANSCRIPTOME;

EID: 85002032285     PISSN: 09646906     EISSN: 14602083     Source Type: Journal    
DOI: 10.1093/hmg/ddw271     Document Type: Article
Times cited : (77)

References (28)
  • 9
    • 84943750850 scopus 로고    scopus 로고
    • Endogenous DUX4 expression in FSHD myotubes is sufficient to cause cell death and disrupts RNA splicing and cell migration pathways
    • Rickard, A.M., Petek, L.M. and Miller, D.G. (2015) Endogenous DUX4 expression in FSHD myotubes is sufficient to cause cell death and disrupts RNA splicing and cell migration pathways. Hum. Mol. Genet., 24, 5901-5914.
    • (2015) Hum. Mol. Genet , vol.24 , pp. 5901-5914
    • Rickard, A.M.1    Petek, L.M.2    Miller, D.G.3
  • 14
    • 84958170812 scopus 로고    scopus 로고
    • Expression of FSHD-related DUX4-FL alters proteostasis and induces TDP-43 aggregation
    • Homma, S., Beermann, M.L., Boyce, F.M. and Miller, J.B. (2015) Expression of FSHD-related DUX4-FL alters proteostasis and induces TDP-43 aggregation. Ann. Clin. Transl Neurol., 2, 151-166.
    • (2015) Ann. Clin. Transl Neurol , vol.2 , pp. 151-166
    • Homma, S.1    Beermann, M.L.2    Boyce, F.M.3    Miller, J.B.4
  • 15
    • 85006326562 scopus 로고    scopus 로고
    • A feedback loop between nonsense-mediated decay and the retrogene DUX4 in facioscapulohumeral muscular dystrophy
    • Feng, Q., Snider, L., Jagannathan, S., Tawil, R., van der Maarel, S.M., Tapscott, S.J. and Bradley, R.K. (2015) A feedback loop between nonsense-mediated decay and the retrogene DUX4 in facioscapulohumeral muscular dystrophy. Elife, 4
    • (2015) Elife , vol.4
    • Feng, Q.1    Snider, L.2    Jagannathan, S.3    Tawil, R.4    van der Maarel, S.M.5    Tapscott, S.J.6    Bradley, R.K.7
  • 16
  • 18
    • 84874677498 scopus 로고    scopus 로고
    • A comparison of methods for differential expression analysis of RNA-seq data
    • Soneson, C. and Delorenzi, M. (2013) A comparison of methods for differential expression analysis of RNA-seq data. BMC Bioinformatics, 14, 91.
    • (2013) BMC Bioinformatics , vol.14 , pp. 91
    • Soneson, C.1    Delorenzi, M.2
  • 21
    • 67249104052 scopus 로고    scopus 로고
    • RNA transcripts, miRNA-sized fragments and proteins produced from D4Z4 units: new candidates for the pathophysiology of facioscapulohumeral dystrophy
    • Snider, L., Asawachaicharn, A., Tyler, A.E., Geng, L.N., Petek, L.M., Maves, L., Miller, D.G., Lemmers, R.J., Winokur, S.T., Tawil, R., et al. (2009) RNA transcripts, miRNA-sized fragments and proteins produced from D4Z4 units: new candidates for the pathophysiology of facioscapulohumeral dystrophy. Hum. Mol. Genet., 18, 2414-2430.
    • (2009) Hum. Mol. Genet , vol.18 , pp. 2414-2430
    • Snider, L.1    Asawachaicharn, A.2    Tyler, A.E.3    Geng, L.N.4    Petek, L.M.5    Maves, L.6    Miller, D.G.7    Lemmers, R.J.8    Winokur, S.T.9    Tawil, R.10
  • 22
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead, B., Trapnell, C., Pop, M. and Salzberg, S.L. (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol., 10, R25.
    • (2009) Genome Biol , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 23
    • 79961123152 scopus 로고    scopus 로고
    • RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
    • Li, B. and Dewey, C.N. (2011) RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinformatics, 12, 323.
    • (2011) BMC Bioinformatics , vol.12 , pp. 323
    • Li, B.1    Dewey, C.N.2
  • 24
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: discovering splice junctions with RNA-Seq
    • Trapnell, C., Pachter, L. and Salzberg, S.L. (2009) TopHat: discovering splice junctions with RNA-Seq. Bioinformatics, 25, 1105-1111.
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 26
    • 77953176036 scopus 로고    scopus 로고
    • A scaling normalization method for differential expression analysis of RNA-seq data
    • Robinson, M.D. and Oshlack, A. (2010) A scaling normalization method for differential expression analysis of RNA-seq data. Genome Biol., 11, R25.
    • (2010) Genome Biol , vol.11
    • Robinson, M.D.1    Oshlack, A.2
  • 28
    • 84976875034 scopus 로고    scopus 로고
    • PANTHER version 10: expanded protein families and functions, and analysis tools
    • Mi, H., Poudel, S., Muruganujan, A., Casagrande, J.T. and Thomas, P.D. (2016) PANTHER version 10: expanded protein families and functions, and analysis tools. Nucleic Acids Res., 44, D336-D342.
    • (2016) Nucleic Acids Res , vol.44 , pp. D336-D342
    • Mi, H.1    Poudel, S.2    Muruganujan, A.3    Casagrande, J.T.4    Thomas, P.D.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.