-
1
-
-
77956873627
-
Tackling the widespread and critical impact of batch effects in high-throughput data
-
Leek JT, et al. (2010) Tackling the widespread and critical impact of batch effects in high-throughput data. Nat Rev Genet 11(10):733-739
-
(2010)
Nat Rev Genet
, vol.11
, Issue.10
, pp. 733-739
-
-
Leek, J.T.1
-
2
-
-
79952230540
-
Removing batch effects in analysis of expression microarray data: An evaluation of six batch adjustment methods
-
Chen C, et al. (2011) Removing batch effects in analysis of expression microarray data: An evaluation of six batch adjustment methods. PLoS ONE 6(2):e17238
-
(2011)
PLoS ONE
, vol.6
, Issue.2
, pp. e17238
-
-
Chen, C.1
-
3
-
-
33845432928
-
Adjusting batch effects in microarray expression data using empirical Bayes methods
-
Johnson WE, Li C, Rabinovic A (2007) Adjusting batch effects in microarray expression data using empirical Bayes methods. Biostatistics 8(1):118-127
-
(2007)
Biostatistics
, vol.8
, Issue.1
, pp. 118-127
-
-
Johnson, W.E.1
Li, C.2
Rabinovic, A.3
-
4
-
-
77956880496
-
A multilevel model to address batch effects in copy number estimation using SNP arrays
-
Scharpf RB, et al. (2011) A multilevel model to address batch effects in copy number estimation using SNP arrays. Biostatistics 12(1):33-50
-
(2011)
Biostatistics
, vol.12
, Issue.1
, pp. 33-50
-
-
Scharpf, R.B.1
-
5
-
-
84909587930
-
Detecting and correcting systematic variation in large-scale RNA sequencing data
-
Li S, et al. (2014) Detecting and correcting systematic variation in large-scale RNA sequencing data. Nat Biotechnol 32(9):888-895
-
(2014)
Nat Biotechnol
, vol.32
, Issue.9
, pp. 888-895
-
-
Li, S.1
-
6
-
-
84893588252
-
Interferences from blood collection tube components on clinical chemistry assays
-
Bowen RA, Remaley AT (2014) Interferences from blood collection tube components on clinical chemistry assays. Biochem Med (Zagreb) 24(1):31-44
-
(2014)
Biochem Med (Zagreb)
, vol.24
, Issue.1
, pp. 31-44
-
-
Bowen, R.A.1
Remaley, A.T.2
-
7
-
-
40549102403
-
Specimen collection and handling: Standardization of blood sample collection
-
Tammen H (2008) Specimen collection and handling: Standardization of blood sample collection. Methods Mol Biol 428:35-42
-
(2008)
Methods Mol Biol
, vol.428
, pp. 35-42
-
-
Tammen, H.1
-
8
-
-
84875986426
-
Translational research in pediatrics II: Blood collection, processing, shipping, and storage
-
Gillio-Meina C, Cepinskas G, Cecchini EL, Fraser DD (2013) Translational research in pediatrics II: Blood collection, processing, shipping, and storage. Pediatrics 131(4): 754-766
-
(2013)
Pediatrics
, vol.131
, Issue.4
, pp. 754-766
-
-
Gillio-Meina, C.1
Cepinskas, G.2
Cecchini, E.L.3
Fraser, D.D.4
-
9
-
-
18644367266
-
Stabilization of mRNA expression in whole blood samples
-
Rainen L, et al. (2002) Stabilization of mRNA expression in whole blood samples. Clin Chem 48(11):1883-1890
-
(2002)
Clin Chem
, vol.48
, Issue.11
, pp. 1883-1890
-
-
Rainen, L.1
-
10
-
-
78649324389
-
PTEN transcript variants caused by illegitimate splicing in "aged" blood samples and EBV-transformed cell lines
-
Liu Y, Malaviarachchi P, Beggs M, Emanuel PD (2010) PTEN transcript variants caused by illegitimate splicing in "aged" blood samples and EBV-transformed cell lines. Hum Genet 128(6):609-614
-
(2010)
Hum Genet
, vol.128
, Issue.6
, pp. 609-614
-
-
Liu, Y.1
Malaviarachchi, P.2
Beggs, M.3
Emanuel, P.D.4
-
11
-
-
0036590139
-
RT-PCR splicing analysis of the NF1 open reading frame
-
Thomson SA, Wallace MR (2002) RT-PCR splicing analysis of the NF1 open reading frame. Hum Genet 110(5):495-502
-
(2002)
Hum Genet
, vol.110
, Issue.5
, pp. 495-502
-
-
Thomson, S.A.1
Wallace, M.R.2
-
12
-
-
0035235051
-
Exon skipping in the ATM gene in normal individuals: The effect of blood sample storage on RT-PCR analysis
-
Birrell GW, Ramsay JR, Tung JJ, Lavin MF (2001) Exon skipping in the ATM gene in normal individuals: The effect of blood sample storage on RT-PCR analysis. Hum Mutat 17(1):75-76
-
(2001)
Hum Mutat
, vol.17
, Issue.1
, pp. 75-76
-
-
Birrell, G.W.1
Ramsay, J.R.2
Tung, J.J.3
Lavin, M.F.4
-
13
-
-
77957738859
-
Gene expression profiles from peripheral blood mononuclear cells are sensitive to short processing delays
-
Barnes MG, Grom AA, Griffin TA, Colbert RA, Thompson SD (2010) Gene expression profiles from peripheral blood mononuclear cells are sensitive to short processing delays. Biopreservation Biobanking 8(3):153-162
-
(2010)
Biopreservation Biobanking
, vol.8
, Issue.3
, pp. 153-162
-
-
Barnes, M.G.1
Grom, A.A.2
Griffin, T.A.3
Colbert, R.A.4
Thompson, S.D.5
-
14
-
-
41849099419
-
Levels of 5' RNA tags in plasma and buffy coat from EDTA blood increase with time
-
Salway F, Day PJ, Ollier WE, Peakman TC (2008) Levels of 5' RNA tags in plasma and buffy coat from EDTA blood increase with time. Int J Epidemiol 37(suppl 1):i11-i15
-
(2008)
Int J Epidemiol
, vol.37
, pp. i11-i15
-
-
Salway, F.1
Day, P.J.2
Ollier, W.E.3
Peakman, T.C.4
-
15
-
-
4344680233
-
Expression levels for many genes in human peripheral blood cells are highly sensitive to ex vivo incubation
-
Baechler EC, et al. (2004) Expression levels for many genes in human peripheral blood cells are highly sensitive to ex vivo incubation. Genes Immun 5(5):347-353
-
(2004)
Genes Immun
, vol.5
, Issue.5
, pp. 347-353
-
-
Baechler, E.C.1
-
16
-
-
84902575253
-
NOTCH2 and FLT3 gene mis-splicings are common events in patients with acute myeloid leukemia (AML): New potential targets in AML
-
Adamia S, et al. (2014) NOTCH2 and FLT3 gene mis-splicings are common events in patients with acute myeloid leukemia (AML): New potential targets in AML. Blood 123(18):2816-2825
-
(2014)
Blood
, vol.123
, Issue.18
, pp. 2816-2825
-
-
Adamia, S.1
-
17
-
-
83455196188
-
Overexpression of LEF1 predicts unfavorable outcome in adult patients with B-precursor acute lymphoblastic leukemia
-
Kühnl A, et al. (2011) Overexpression of LEF1 predicts unfavorable outcome in adult patients with B-precursor acute lymphoblastic leukemia. Blood 118(24):6362-6367
-
(2011)
Blood
, vol.118
, Issue.24
, pp. 6362-6367
-
-
Kühnl, A.1
-
18
-
-
84866158583
-
High expression of lymphoid enhancer-binding factor-1 (LEF1) is a novel favorable prognostic factor in cytogenetically normal acute myeloid leukemia
-
Metzeler KH, et al. (2012) High expression of lymphoid enhancer-binding factor-1 (LEF1) is a novel favorable prognostic factor in cytogenetically normal acute myeloid leukemia. Blood 120(10):2118-2126
-
(2012)
Blood
, vol.120
, Issue.10
, pp. 2118-2126
-
-
Metzeler, K.H.1
-
19
-
-
84888206534
-
PHF20 regulates NF-?B signalling by disrupting recruitment of PP2A to p65
-
Zhang T, et al. (2013) PHF20 regulates NF-?B signalling by disrupting recruitment of PP2A to p65. Nat Commun 4:2062
-
(2013)
Nat Commun
, vol.4
, pp. 2062
-
-
Zhang, T.1
-
20
-
-
84874663688
-
Relapse-specific mutations in NT5C2 in childhood acute lymphoblastic leukemia
-
Meyer JA, et al. (2013) Relapse-specific mutations in NT5C2 in childhood acute lymphoblastic leukemia. Nat Genet 45(3):290-294
-
(2013)
Nat Genet
, vol.45
, Issue.3
, pp. 290-294
-
-
Meyer, J.A.1
-
21
-
-
84555171449
-
Exome sequencing identifies recurrent mutations of the splicing factor SF3B1 gene in chronic lymphocytic leukemia
-
Quesada V, et al. (2012) Exome sequencing identifies recurrent mutations of the splicing factor SF3B1 gene in chronic lymphocytic leukemia. Nat Genet 44(1):47-52
-
(2012)
Nat Genet
, vol.44
, Issue.1
, pp. 47-52
-
-
Quesada, V.1
-
22
-
-
84884244117
-
RNA-Seq reveals spliceosome and proteasome genes as most consistent transcripts in human cancer cells
-
Macrae T, et al. (2013) RNA-Seq reveals spliceosome and proteasome genes as most consistent transcripts in human cancer cells. PLoS ONE 8(9):e72884
-
(2013)
PLoS ONE
, vol.8
, Issue.9
, pp. e72884
-
-
Macrae, T.1
-
23
-
-
84899734963
-
Comprehensive analysis of transcriptome variation uncovers known and novel driver events in T-cell acute lymphoblastic leukemia
-
Atak ZK, et al. (2013) Comprehensive analysis of transcriptome variation uncovers known and novel driver events in T-cell acute lymphoblastic leukemia. PLoS Genet 9(12):e1003997
-
(2013)
PLoS Genet
, vol.9
, Issue.12
, pp. e1003997
-
-
Atak, Z.K.1
-
24
-
-
84878372012
-
Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia
-
Cancer Genome Atlas Research Network
-
Cancer Genome Atlas Research Network (2013) Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia. N Engl J Med 368(22):2059-2074.
-
(2013)
N Engl J Med
, vol.368
, Issue.22
, pp. 2059-2074
-
-
-
25
-
-
84873579853
-
CUX1 is a haploinsufficient tumor suppressor gene on chromosome 7 frequently inactivated in acute myeloid leukemia
-
McNerney ME, et al. (2013) CUX1 is a haploinsufficient tumor suppressor gene on chromosome 7 frequently inactivated in acute myeloid leukemia. Blood 121(6): 975-983
-
(2013)
Blood
, vol.121
, Issue.6
, pp. 975-983
-
-
McNerney, M.E.1
-
26
-
-
84871256210
-
New fusion transcripts identified in normal karyotype acute myeloid leukemia
-
Wen H, et al. (2012) New fusion transcripts identified in normal karyotype acute myeloid leukemia. PLoS ONE 7(12):e51203
-
(2012)
PLoS ONE
, vol.7
, Issue.12
, pp. e51203
-
-
Wen, H.1
-
27
-
-
84871988651
-
Recurrent SETBP1 mutations in atypical chronic myeloid leukemia
-
Piazza R, et al. (2013) Recurrent SETBP1 mutations in atypical chronic myeloid leukemia. Nat Genet 45(1):18-24
-
(2013)
Nat Genet
, vol.45
, Issue.1
, pp. 18-24
-
-
Piazza, R.1
-
28
-
-
36549022557
-
Identification of genes with abnormal expression changes in acute myeloid leukemia
-
Stirewalt DL, et al. (2008) Identification of genes with abnormal expression changes in acute myeloid leukemia. Genes Chromosomes Cancer 47(1):8-20
-
(2008)
Genes Chromosomes Cancer
, vol.47
, Issue.1
, pp. 8-20
-
-
Stirewalt, D.L.1
-
29
-
-
84867051939
-
Burkitt lymphoma pathogenesis and therapeutic targets from structural and functional genomics
-
Schmitz R, et al. (2012) Burkitt lymphoma pathogenesis and therapeutic targets from structural and functional genomics. Nature 490(7418):116-120
-
(2012)
Nature
, vol.490
, Issue.7418
, pp. 116-120
-
-
Schmitz, R.1
-
30
-
-
80052029516
-
Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma
-
Morin RD, et al. (2011) Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma. Nature 476(7360):298-303
-
(2011)
Nature
, vol.476
, Issue.7360
, pp. 298-303
-
-
Morin, R.D.1
-
31
-
-
84893699492
-
Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia
-
Ferreira PG, et al. (2014) Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia. Genome Res 24(2):212-226
-
(2014)
Genome Res
, vol.24
, Issue.2
, pp. 212-226
-
-
Ferreira, P.G.1
-
32
-
-
84875404794
-
The UCSC Genome Browser database: Extensions and updates 2013
-
database issue
-
Meyer LR, et al. (2013) The UCSC Genome Browser database: Extensions and updates 2013. Nucleic Acids Res 41(database issue):D64-D69
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D64-D69
-
-
Meyer, L.R.1
-
33
-
-
0036936826
-
Improvement of molecular monitoring of residual disease in leukemias by bedside RNA stabilization
-
Müller MC, et al. (2002) Improvement of molecular monitoring of residual disease in leukemias by bedside RNA stabilization. Leukemia 16(12):2395-2399
-
(2002)
Leukemia
, vol.16
, Issue.12
, pp. 2395-2399
-
-
Müller, M.C.1
-
34
-
-
84903729955
-
RNA-seq: Impact of RNA degradation on transcript quantification
-
Gallego Romero I, Pai AA, Tung J, Gilad Y (2014) RNA-seq: Impact of RNA degradation on transcript quantification. BMC Biol 12(1):42
-
(2014)
BMC Biol
, vol.12
, Issue.1
, pp. 42
-
-
Gallego Romero, I.1
Pai, A.A.2
Tung, J.3
Gilad, Y.4
-
35
-
-
77949811343
-
Nonsense-mediated RNA decay regulation by cellular stress: Implications for tumorigenesis
-
Gardner LB (2010) Nonsense-mediated RNA decay regulation by cellular stress: Implications for tumorigenesis. Mol Cancer Res 8(3):295-308
-
(2010)
Mol Cancer Res
, vol.8
, Issue.3
, pp. 295-308
-
-
Gardner, L.B.1
|