Modeling oblong proteins and water-mediated interfaces with RosettaDock in CAPRI rounds 28–35

Proteins: Structure, Function and Bioinformatics

Volumn 85, Issue 3, 2017, Pages 479-486

  Marze, Nicholas A ^a   Jeliazkov, Jeliazko R ^b,e   Roy Burman, Shourya S ^a   Boyken, Scott E ^c,d   DiMaio, Frank ^c,d   Gray, Jeffrey J ^a,e,f  

^a Johns Hopkins University   (United States)

^b JOHNS HOPKINS UNIVERSITY   (United States)

^c UNIVERSITY OF WASHINGTON SCHOOL OF MEDICINE   (United States)

^d UNIVERSITY OF WASHINGTON   (United States)

^e JOHNS HOPKINS UNIVERSITY   (United States)

^f JOHNS HOPKINS UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

CAPRI; conformational change; protein protein docking; Rosetta; water mediated interfaces

Indexed keywords

BMI1 PROTEIN; DEOXYRIBONUCLEASE; GREEN FLUORESCENT PROTEIN; HEMOPEXIN; PROTEIN; WATER; DNA HELICASE; INO80 PROTEIN, HUMAN; NUCLEOSOME; PROTEIN BINDING; PROTEINASE; UBIQUITIN ISOPEPTIDASE;

ARTICLE; ENZYME INHIBITOR COMPLEX; HYDROGEN BOND; MOLECULAR DOCKING; NUCLEOSOME; PREDICTION; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN DOMAIN; PROTEIN PROTEIN INTERACTION; ALGORITHM; BENCHMARKING; BINDING SITE; BIOLOGY; CHEMISTRY; METHODOLOGY; PROCEDURES; PROTEIN CONFORMATION; PROTEIN MOTIF; SOFTWARE; THERMODYNAMICS; X RAY CRYSTALLOGRAPHY;

ALGORITHMS; AMINO ACID MOTIFS; BENCHMARKING; BINDING SITES; COMPUTATIONAL BIOLOGY; CRYSTALLOGRAPHY, X-RAY; DEOXYRIBONUCLEASES; DNA HELICASES; ENDOPEPTIDASES; HYDROGEN BONDING; MOLECULAR DOCKING SIMULATION; NUCLEOSOMES; PROTEIN BINDING; PROTEIN CONFORMATION; RESEARCH DESIGN; SOFTWARE; THERMODYNAMICS; WATER;

EID: 85000842691     PISSN: 08873585     EISSN: 10970134     Source Type: Journal    
DOI: 10.1002/prot.25168     Document Type: Article

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