Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment

Proteins: Structure, Function and Bioinformatics

Volumn 84, Issue , 2016, Pages 323-348

  Lensink, Marc F ^a   Velankar, Sameer ^b   Kryshtafovych, Andriy ^c   Huang, Shen You ^d   Schneidman Duhovny, Dina ^e   Sali, Andrej ^e,f   Segura, Joan ^g   Fernandez Fuentes, Narcis ^h   Viswanath, Shruthi ^i,j   Elber, Ron ^j,k   Grudinin, Sergei ^l,m   Popov, Petr ^l,m,n   Neveu, Emilie ^l,m   Lee, Hasup ^o   Baek, Minkyung ^o   Park, Sangwoo ^o   Heo, Lim ^o   Lee, Gyu Rie ^o   Seok, Chaok ^o   Qin, Sanbo ^p   Zhou, Huan Xiang ^p   Ritchie, David W ^q   Maigret, Bernard ^r   Devignes, Marie Dominique ^r   Ghoorah, Anisah ^s   Torchala, Mieczyslaw ^t   Chaleil, Raphaël A G ^t   Bates, Paul A ^t   Ben Zeev, Efrat ^u   Eisenstein, Miriam ^u   Negi, Surendra S ^v   Weng, Zhiping ^w   Vreven, Thom ^w   Pierce, Brian G ^w   Borrman, Tyler M ^w,ba   Yu, Jinchao ^x   Ochsenbein, Françoise ^x   Guerois, Raphaël ^x   Vangone, Anna ^y   Rodrigues, João P G L M ^y   Van Zundert, Gydo ^y   Nellen, Mehdi ^y   Xue, Li ^y   Karaca, Ezgi ^y   Melquiond, Adrien S J ^y   Visscher, Koen ^y   Kastritis, Panagiotis L ^y   Bonvin, Alexandre M J J ^y   Xu, Xianjin ^z   Qiu, Liming ^z   Yan, Chengfei ^z,aa   Li, Jilong ^aa   Ma, Zhiwei ^z,aa   Cheng, Jianlin ^aa   Zou, Xiaoqin ^z,aa,ab   Shen, Yang ^ac,bb   Peterson, Lenna X ^ad   Kim, Hyung Rae ^ad   Roy, Amit ^ad,ae   Han, Xusi ^ad   Esquivel Rodriguez, Juan ^af   Kihara, Daisuke ^ad,af   Yu, Xiaofeng ^ag   Bruce, Neil J ^ag   Fuller, Jonathan C ^ag   Wade, Rebecca C ^ag,ah,ai   Anishchenko, Ivan ^aj   Kundrotas, Petras J ^aj   Vakser, Ilya A ^aj   Imai, Kenichiro ^ak   Yamada, Kazunori ^ak,bc   Oda, Toshiyuki ^ak   Nakamura, Tsukasa ^al   Tomii, Kentaro ^ak,al   Pallara, Chiara ^am   Romero Durana, Miguel ^am   Jiménez García, Brian ^am   Moal, Iain H ^b,am   Férnandez Recio, Juan ^am   Joung, Jong Young ^an   Kim, Jong Yun ^an   Joo, Keehyoung ^an   Lee, Jooyoung ^an   Kozakov, Dima ^ao   Vajda, Sandor ^ao,ap   Mottarella, Scott ^ao   Hall, David R ^ao   Beglov, Dmitri ^ao   Mamonov, Artem ^ao   Xia, Bing ^ao   Bohnuud, Tanggis ^ao   Del Carpio, Carlos A ^aq,ar   Ichiishi, Eichiro ^as   Marze, Nicholas ^at   Kuroda, Daisuke ^at,bd   Roy Burman, Shourya S ^at   Gray, Jeffrey J ^at,au   Chermak, Edrisse ^av   Cavallo, Luigi ^av   Oliva, Romina ^aw   Tovchigrechko, Andrey ^ax   Wodak, Shoshana J ^ay,az   more..

^a UNIV LILLE   (France)

^b WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d University of Missouri   (United States)

^e UNIVERSITY OF CALIFORNIA   (United States)

^f UNIVERSITY OF CALIFORNIA   (United States)

^g CENTRO NACIONAL DE BIOTECNOLOGÍA   (Spain)

^h ABERYSTWYTH UNIVERSITY   (United Kingdom)

ⁱ University of Texas at Austin   (United States)

^j UNIVERSITY OF TEXAS AT AUSTIN   (United States)

^k University of Texas at Austin   (United States)

^l UNIV GRENOBLE ALPES   (France)

^m INRIA   (France)

ⁿ MOSCOW INSTITUTE OF PHYSICS AND TECHNOLOGY   (Russian Federation)

^o Seoul National University   (South Korea)

^p Florida State University   (United States)

^q INRIA   (France)

^r LORIA   (France)

^s UNIVERSITY OF MAURITIUS   (Mauritius)

^t THE FRANCIS CRICK INSTITUTE   (United Kingdom)

^u WEIZMANN INSTITUTE OF SCIENCE   (Israel)

^v University of Texas Medical Branch School of Medicine   (United States)

^w UNIVERSITY OF MASSACHUSETTS MEDICAL SCHOOL   (United States)

^x UNIVERSITÉ PARIS SACLAY   (France)

^y UTRECHT UNIVERSITY   (Netherlands)

^z UNIVERSITY OF MISSOURI   (United States)

^aa UNIVERSITY OF MISSOURI   (United States)

^ab University of Missouri   (United States)

^ac TOYOTA TECHNOLOGICAL INSTITUTE AT CHICAGO   (United States)

^ad PURDUE UNIVERSITY   (United States)

^ae NATIONAL INSTITUTES OF HEALTH   (United States)

^af Purdue University   (United States)

^ag HEIDELBERG INSTITUTE FOR THEORETICAL STUDIES   (Germany)

^ah GERMAN CANCER RESEARCH CENTER   (Germany)

^ai UNIVERSITY OF HEIDELBERG   (Germany)

^aj UNIVERSITY OF KANSAS   (United States)

^ak NATIONAL INSTITUTE OF ADVANCED INDUSTRIAL SCIENCE AND TECHNOLOGY AIST   (Japan)

^al UNIVERSITY OF TOKYO   (Japan)

^am BARCELONA SUPERCOMPUTING CENTER   (Spain)

^an Korea Institute for Advanced Study   (South Korea)

^ao Boston University   (United States)

^ap USA   (United States)

^aq Institute of Biological Diversity   (United States)

^ar KYOTO INSTITUTE OF TECHNOLOGY   (Japan)

^as INTERNATIONAL UNIVERSITY OF HEALTH AND WELFARE   (Japan)

^at Johns Hopkins University   (United States)

^au JOHNS HOPKINS UNIVERSITY   (United States)

^av KING ABDULLAH UNIVERSITY OF SCIENCE AND TECHNOLOGY   (Saudi Arabia)

^aw UNIVERSITY OF NAPLES PARTHENOPE   (Italy)

^ax J CRAIG VENTER INSTITUTE   (United States)

^ay UNIVERSITY OF TORONTO   (Canada)

^az DEPARTMENT OF PLANT SYSTEMS BIOLOGY   (Belgium)

^ba UNIVERSITY OF MARYLAND   (United States)

^bb Department of Electrical and Computer Engineering   (United States)

^bc TOHOKU UNIVERSITY   (Japan)

^bd SHOWA UNIVERSITY   (Japan)

more..

Author keywords

Blind prediction; CAPRI; CASP; Oligomer state; Protein docking; Protein interaction

Indexed keywords

HETERODIMER; HETEROPROTEIN COMPLEX; HOMODIMER; HOMOPROTEIN COMPLEX; OLIGOMER; PROTEIN; UNCLASSIFIED DRUG; PROTEIN BINDING;

ARTICLE; HUMAN; MOLECULAR DOCKING; MOLECULAR MODEL; PREDICTION; PRIORITY JOURNAL; PROTEIN DATA BANK; PROTEIN STRUCTURE; SEQUENCE HOMOLOGY; STRUCTURE ANALYSIS; ALGORITHM; ALPHA HELIX; BACTERIUM; BETA SHEET; BINDING SITE; BIOLOGY; CHEMISTRY; INTERNATIONAL COOPERATION; INTERNET; MOLECULAR DYNAMICS; PROCEDURES; PROTEIN DOMAIN; PROTEIN FOLDING; PROTEIN MOTIF; PROTEIN MULTIMERIZATION; PROTEIN TERTIARY STRUCTURE; SOFTWARE; STATISTICAL MODEL; STATISTICS AND NUMERICAL DATA; THERMODYNAMICS;

ALGORITHMS; AMINO ACID MOTIFS; BACTERIA; BINDING SITES; COMPUTATIONAL BIOLOGY; HUMANS; INTERNATIONAL COOPERATION; INTERNET; MODELS, STATISTICAL; MOLECULAR DOCKING SIMULATION; MOLECULAR DYNAMICS SIMULATION; PROTEIN BINDING; PROTEIN CONFORMATION, ALPHA-HELICAL; PROTEIN CONFORMATION, BETA-STRAND; PROTEIN FOLDING; PROTEIN INTERACTION DOMAINS AND MOTIFS; PROTEIN MULTIMERIZATION; PROTEIN STRUCTURE, TERTIARY; PROTEINS; SEQUENCE HOMOLOGY, AMINO ACID; SOFTWARE; THERMODYNAMICS;

EID: 84973338605     PISSN: 08873585     EISSN: 10970134     Source Type: Journal    
DOI: 10.1002/prot.25007     Document Type: Article

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