-
1
-
-
0018598277
-
Nucleotide sequence analysis of the chloramphenicol resistance transposon Tn9
-
Alton, N. K., and D. Vapnek. 1979. Nucleotide sequence analysis of the chloramphenicol resistance transposon Tn9. Nature 282:864-869.
-
(1979)
Nature
, vol.282
, pp. 864-869
-
-
Alton, N.K.1
Vapnek, D.2
-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
-
(1990)
J. Mol. Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
0344731446
-
A new chloramphenicol and florfenicol resistance gene flanked by two integron structures in Salmonella typhimurium DT104
-
Arcangioli, M. A., S. Leroy-Sétrin, J. L. Martel, and E. Chaslus-Dancla. 1999. A new chloramphenicol and florfenicol resistance gene flanked by two integron structures in Salmonella typhimurium DT104. FEMS Microbiol. Lett. 174:327-332.
-
(1999)
FEMS Microbiol. Lett
, vol.174
, pp. 327-332
-
-
Arcangioli, M.A.1
Leroy-Sétrin, S.2
Martel, J.L.3
Chaslus-Dancla, E.4
-
4
-
-
79952809893
-
Distribution of the blaTEM gene and blaTEM-containing transposons in commensal Escherichia coli
-
Bailey, J. K., J. L. Pinyon, S. Anantham, and R. M. Hall. 2011. Distribution of the blaTEM gene and blaTEM-containing transposons in commensal Escherichia coli. J. Antimicrob. Chemother. 66:745-751.
-
(2011)
J. Antimicrob. Chemother
, vol.66
, pp. 745-751
-
-
Bailey, J.K.1
Pinyon, J.L.2
Anantham, S.3
Hall, R.M.4
-
5
-
-
84860771820
-
SPAdes: A new genome assembly algorithm and its applications to single-cell sequencing
-
Bankevich, A., S. Nurk, D. Antipov, A. A. Gurevich, M. Dvorkin, A. S. Kulikov, V. M. Lesin, S. I. Nikolenko, S. Pham, A. D. Prjibelski, A. V. Pyshkin, A. V. Sirotkin, N. Vyahhi, G. Tesler, M. A. Alekseyev, and P. A. Pevzner. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J. Comput. Biol. 19:455-477.
-
(2012)
J. Comput. Biol
, vol.19
, pp. 455-477
-
-
Bankevich, A.1
Nurk, S.2
Antipov, D.3
Gurevich, A.A.4
Dvorkin, M.5
Kulikov, A.S.6
Lesin, V.M.7
Nikolenko, S.I.8
Pham, S.9
Prjibelski, A.D.10
Pyshkin, A.V.11
Sirotkin, A.V.12
Vyahhi, N.13
Tesler, G.14
Alekseyev, M.A.15
Pevzner, P.A.16
-
6
-
-
84865759023
-
Polyester cloth-based hybridization array system for identification of enterohemorrhagic Escherichia coli serogroups O26 O45, O103, O111, O121, O145, and O157
-
Blais, B. W., M. Gauthier, M. Deschênes, and G. Huszczynski. 2012. Polyester cloth-based hybridization array system for identification of enterohemorrhagic Escherichia coli serogroups O26, O45, O103, O111, O121, O145, and O157. J. Food Prot. 75:1691-1697.
-
(2012)
J. Food Prot
, vol.75
, pp. 1691-1697
-
-
Blais, B.W.1
Gauthier, M.2
Deschênes, M.3
Huszczynski, G.4
-
7
-
-
0025850820
-
Mutations in the aphA-2 gene of transposon Tn5 mapping within the regions highly conserved in aminoglycoside-phosphotransferases strongly reduce aminoglycoside resistance
-
Blázquez, J., J. Davies, and F. Moreno. 1991. Mutations in the aphA-2 gene of transposon Tn5 mapping within the regions highly conserved in aminoglycoside-phosphotransferases strongly reduce aminoglycoside resistance. Mol. Microbiol. 5:1511-1518.
-
(1991)
Mol. Microbiol
, vol.5
, pp. 1511-1518
-
-
Blázquez, J.1
Davies, J.2
Moreno, F.3
-
8
-
-
79953212962
-
Prevalence and characterization of non-O157 Shiga toxin-producing Escherichia coli isolates from commercial ground beef in the United States
-
Bosilevac, J. M., and M. Koohmaraie. 2011. Prevalence and characterization of non-O157 Shiga toxin-producing Escherichia coli isolates from commercial ground beef in the United States. Appl. Environ. Microbiol. 77:2103-2112.
-
(2011)
Appl. Environ. Microbiol
, vol.77
, pp. 2103-2112
-
-
Bosilevac, J.M.1
Koohmaraie, M.2
-
9
-
-
84869435180
-
Evolution of a multiple antibiotic resistance region in IncHI1 plasmids: Reshaping resistance regions in situ
-
Cain, A. K., and R. M. Hall. 2012. Evolution of a multiple antibiotic resistance region in IncHI1 plasmids: reshaping resistance regions in situ. J. Antimicrob. Chemother. 67:2848-2853.
-
(2012)
J. Antimicrob. Chemother
, vol.67
, pp. 2848-2853
-
-
Cain, A.K.1
Hall, R.M.2
-
10
-
-
0027528606
-
Nucleotide sequence analysis of a transposon (Tn5393) carrying streptomycin resistance genes in Erwinia amylovora and other gram-negative bacteria
-
Chiou, C. S., and A. L. Jones. 1993. Nucleotide sequence analysis of a transposon (Tn5393) carrying streptomycin resistance genes in Erwinia amylovora and other gram-negative bacteria. J. Bacteriol. 175:732-740.
-
(1993)
J. Bacteriol
, vol.175
, pp. 732-740
-
-
Chiou, C.S.1
Jones, A.L.2
-
12
-
-
65649092976
-
Biopython: Freely available Python tools for computational molecular biology and bioinformatics
-
Cock, P. J., T. Antao, J. T. Chang, B. A. Chapman, C. J. Cox, A. Dalke, I. Friedberg, T. Hamelryck, F. Kauff, B. Wilczynski, and M. J. de Hoon. 2009. Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics 25:1422-1423.
-
(2009)
Bioinformatics
, vol.25
, pp. 1422-1423
-
-
Cock, P.J.1
Antao, T.2
Chang, J.T.3
Chapman, B.A.4
Cox, C.J.5
Dalke, A.6
Friedberg, I.7
Hamelryck, T.8
Kauff, F.9
Wilczynski, B.10
De Hoon, M.J.11
-
13
-
-
79955575753
-
A requirement of TolC and MDR efflux pumps for acid adaptation and GadAB induction in Escherichia coli
-
Deininger, K. N., A. Horikawa, R. D. Kitko, R. Tatsumi, J. L. Rosner, M. Wachi, and J. L. Slonczewski. 2011. A requirement of TolC and MDR efflux pumps for acid adaptation and GadAB induction in Escherichia coli. PLoS One 6(4):e18960. doi:10.1371/journal.pone. 0018960.
-
(2011)
PLoS One
, vol.6
, Issue.4
, pp. e18960
-
-
Deininger, K.N.1
Horikawa, A.2
Kitko, R.D.3
Tatsumi, R.4
Rosner, J.L.5
Wachi, M.6
Slonczewski, J.L.7
-
14
-
-
0038311917
-
Decreased susceptibility to cefepime in a clinical strain of Escherichia coli related to plasmid-And integron-encoded OXA-30 beta-lactamase
-
Dubois, V., C. Arpin, C. Quentin, J. Texier-Maugein, L. Poirel, and P. Nordmann. 2003. Decreased susceptibility to cefepime in a clinical strain of Escherichia coli related to plasmid-And integron-encoded OXA-30 beta-lactamase. Antimicrob. Agents Chemother. 47:2380-2381.
-
(2003)
Antimicrob. Agents Chemother
, vol.47
, pp. 2380-2381
-
-
Dubois, V.1
Arpin, C.2
Quentin, C.3
Texier-Maugein, J.4
Poirel, L.5
Nordmann, P.6
-
15
-
-
84965006254
-
-
European Committee on Antimicrobial Susceptibility Testing (EUCAST) . Accessed 1 April 2016
-
European Committee on Antimicrobial Susceptibility Testing (EUCAST). 2016. Breakpoint tables for interpretation of MICs and zone diameters. Version 6.0. Available at: http://www.eucast.org. Accessed 1 April 2016.
-
(2016)
Breakpoint Tables for Interpretation of MICs and Zone Diameters. Version 6.0
-
-
-
16
-
-
84940755707
-
KSNP3.0: SNP detection and phylogenetic analysis of genomes without genome alignment or reference genome
-
Gardner, S. N., T. Slezak, and B. G. Hall. 2015. kSNP3.0: SNP detection and phylogenetic analysis of genomes without genome alignment or reference genome. Bioinformatics 31:2877-2878.
-
(2015)
Bioinformatics
, vol.31
, pp. 2877-2878
-
-
Gardner, S.N.1
Slezak, T.2
Hall, B.G.3
-
17
-
-
84860810548
-
Development of a method for the detection of verotoxin-producing Escherichia coli in food
-
Gill, A., A. Martinez-Perez, S. McIlwham, and B. Blais. 2012. Development of a method for the detection of verotoxin-producing Escherichia coli in food. J. Food Prot. 75:827-837.
-
(2012)
J. Food Prot
, vol.75
, pp. 827-837
-
-
Gill, A.1
Martinez-Perez, A.2
McIlwham, S.3
Blais, B.4
-
18
-
-
85008507389
-
Whole-genome sequences of multidrug-resistant Escherichia coli strains sharing the same sequence type (ST410) and isolated from human and avian sources in Italy
-
Giufré, M., M. Accogli, C. Graziani, L. Busani, and M. Cerquetti. 2015. Whole-genome sequences of multidrug-resistant Escherichia coli strains sharing the same sequence type (ST410) and isolated from human and avian sources in Italy. Genome Announc. 3(4):e00757-15. doi:10.1128/genomeA.00757-15.
-
(2015)
Genome Announc
, vol.3
, Issue.4
, pp. e00757-e00815
-
-
Giufré, M.1
Accogli, M.2
Graziani, C.3
Busani, L.4
Cerquetti, M.5
-
19
-
-
84891552789
-
ARG-ANNOT, a new bioinformatic tool to discover antibiotic resistance genes in bacterial genomes
-
Gupta, S. K., B. R. Padmanabhan, S. M. Diene, R. Lopez-Rojas, M. Kempf, L. Landraud, and J.-M. Rolain. 2014. ARG-ANNOT, a new bioinformatic tool to discover antibiotic resistance genes in bacterial genomes. Antimicrob. Agents Chemother. 58:212-220.
-
(2014)
Antimicrob. Agents Chemother
, vol.58
, pp. 212-220
-
-
Gupta, S.K.1
Padmanabhan, B.R.2
Diene, S.M.3
Lopez-Rojas, R.4
Kempf, M.5
Landraud, L.6
Rolain, J.-M.7
-
20
-
-
77952997850
-
Genetic identity of aminoglycoside-resistance genes in Escherichia coli isolates from human and animal sources
-
Ho, P. L., R. C. Wong, S. W. Lo, K. H. Chow, S. S. Wong, and T. L. Que. 2010. Genetic identity of aminoglycoside-resistance genes in Escherichia coli isolates from human and animal sources. J. Med. Microbiol. 59:702-707.
-
(2010)
J. Med. Microbiol
, vol.59
, pp. 702-707
-
-
Ho, P.L.1
Wong, R.C.2
Lo, S.W.3
Chow, K.H.4
Wong, S.S.5
Que, T.L.6
-
21
-
-
84885440135
-
Method for the detection of priority Shiga toxin-producing Escherichia coli in beef trim
-
Huszczynski, G., M. Gauthier, S. Mohajer, A. Gill, and B. Blais. 2013. Method for the detection of priority Shiga toxin-producing Escherichia coli in beef trim. J. Food Prot. 76:1689-1696.
-
(2013)
J. Food Prot
, vol.76
, pp. 1689-1696
-
-
Huszczynski, G.1
Gauthier, M.2
Mohajer, S.3
Gill, A.4
Blais, B.5
-
22
-
-
84859151133
-
Ribosomal multilocus sequence typing: Universal characterization of bacteria from domain to strain
-
Jolley, K. A., C. M. Bliss, J. S. Bennett, H. B. Bratcher, C. Brehony, F. M. Colles, H. Wimalarathna, O. B. Harrison, S. K. Sheppard, A. J. Cody, and M. C. Maiden. 2012. Ribosomal multilocus sequence typing: universal characterization of bacteria from domain to strain. Microbiology 158:1005-1015.
-
(2012)
Microbiology
, vol.158
, pp. 1005-1015
-
-
Jolley, K.A.1
Bliss, C.M.2
Bennett, J.S.3
Bratcher, H.B.4
Brehony, C.5
Colles, F.M.6
Wimalarathna, H.7
Harrison, O.B.8
Sheppard, S.K.9
Cody, A.J.10
Maiden, M.C.11
-
23
-
-
78649358717
-
Quake: Qualityaware detection and correction of sequencing errors
-
Kelley, D. R., M. C. Schatz, and S. L. Salzberg. 2010. Quake: qualityaware detection and correction of sequencing errors. Genome Biol. 11:R116.
-
(2010)
Genome Biol
, vol.11
, pp. R116
-
-
Kelley, D.R.1
Schatz, M.C.2
Salzberg, S.L.3
-
24
-
-
84975316604
-
Applying the ResFinder and VirulenceFinder web-services for easy identification of acquired antibiotic resistance and E. Coli virulence genes in bacteriophage and prophage nucleotide sequences
-
Kleinheinz, K. A., K. G. Joensen, and M. V. Larsen. 2014. Applying the ResFinder and VirulenceFinder web-services for easy identification of acquired antibiotic resistance and E. coli virulence genes in bacteriophage and prophage nucleotide sequences. Bacteriophage 4:e27943.
-
(2014)
Bacteriophage
, vol.4
, pp. e27943
-
-
Kleinheinz, K.A.1
Joensen, K.G.2
Larsen, M.V.3
-
25
-
-
84941043919
-
PCR for the specific detection of an Escherichia coli O157:H7 laboratory control strain
-
Knowles, M., D. Lambert, G. Huszczynski, M. Gauthier, and B. W. Blais. 2015. PCR for the specific detection of an Escherichia coli O157:H7 laboratory control strain. J. Food Prot. 78:1738-1744.
-
(2015)
J. Food Prot
, vol.78
, pp. 1738-1744
-
-
Knowles, M.1
Lambert, D.2
Huszczynski, G.3
Gauthier, M.4
Blais, B.W.5
-
26
-
-
84874217126
-
New integron gene arrays from multiresistant clinical isolates of members of the Enterobacteriaceae and Pseudomonas aeruginosa from hospitals in Malaysia
-
Kor, S. B., Q. C. Choo, and C. H. Chew. 2013. New integron gene arrays from multiresistant clinical isolates of members of the Enterobacteriaceae and Pseudomonas aeruginosa from hospitals in Malaysia. J. Med. Microbiol. 62:412-420.
-
(2013)
J. Med. Microbiol
, vol.62
, pp. 412-420
-
-
Kor, S.B.1
Choo, Q.C.2
Chew, C.H.3
-
27
-
-
84908093228
-
Complete sequence of multidrug resistance p9134 plasmid and its variants including natural recombinant with the virulence plasmid of Salmonella serovar Typhimurium
-
Kubasova, T., J. Matiasovicova, I. Rychlik, and H. Juricova. 2014. Complete sequence of multidrug resistance p9134 plasmid and its variants including natural recombinant with the virulence plasmid of Salmonella serovar Typhimurium. Plasmid 76C:8-14.
-
(2014)
Plasmid
, vol.76 C
, pp. 8-14
-
-
Kubasova, T.1
Matiasovicova, J.2
Rychlik, I.3
Juricova, H.4
-
28
-
-
85022158148
-
MEGA7: Molecular evolutionary genetics analysis version 7.0 for bigger datasets
-
Kumar, S., G. Stecher, and K. Tamura. 2016. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol. Biol. Evol. doi:10.1093/molbev/msw054.
-
(2016)
Mol. Biol. Evol
-
-
Kumar, S.1
Stecher, G.2
Tamura, K.3
-
29
-
-
75649105727
-
Bacteremia due to Acinetobacter genomic species 10
-
Kuo, S. C., C. P. Fung, Y. T. Lee, C. P. Chen, and T. L. Chen. 2010. Bacteremia due to Acinetobacter genomic species 10. J. Clin. Microbiol. 48:586-590.
-
(2010)
J. Clin. Microbiol
, vol.48
, pp. 586-590
-
-
Kuo, S.C.1
Fung, C.P.2
Lee, Y.T.3
Chen, C.P.4
Chen, T.L.5
-
30
-
-
84861603991
-
Regional dissemination of a trimethoprim-resistance gene cassette via a successful transposable element
-
Labar, A. S., J. S. Millman, E. Ruebush, J. A. Opintan, R. A. Bishar, A. O. Aboderin, M. J. Newman, A. Lamikanra, and I. N. Okeke. 2012. Regional dissemination of a trimethoprim-resistance gene cassette via a successful transposable element. PLoS One 7:e38142.
-
(2012)
PLoS One
, vol.7
, pp. e38142
-
-
Labar, A.S.1
Millman, J.S.2
Ruebush, E.3
Opintan, J.A.4
Bishar, R.A.5
Aboderin, A.O.6
Newman, M.J.7
Lamikanra, A.8
Okeke, I.N.9
-
31
-
-
84929501297
-
GeneSippr: A rapid whole-genome approach for the identification and characterization of foodborne pathogens such as priority Shiga toxigenic Escherichia coli
-
Lambert, D., C. D. Carrillo, A. G. Koziol, P. Manninger, and B. W. Blais. 2015. GeneSippr: a rapid whole-genome approach for the identification and characterization of foodborne pathogens such as priority Shiga toxigenic Escherichia coli. PLoS One 10:e0122928.
-
(2015)
PLoS One
, vol.10
, pp. e0122928
-
-
Lambert, D.1
Carrillo, C.D.2
Koziol, A.G.3
Manninger, P.4
Blais, B.W.5
-
32
-
-
0025369087
-
Direct involvement of IS26 in an antibiotic resistance operon
-
Lee, K. Y., J. D. Hopkins, and M. Syvanen. 1990. Direct involvement of IS26 in an antibiotic resistance operon. J. Bacteriol. 172:3229-3236.
-
(1990)
J. Bacteriol
, vol.172
, pp. 3229-3236
-
-
Lee, K.Y.1
Hopkins, J.D.2
Syvanen, M.3
-
33
-
-
33749325492
-
An internal amplification control system based on primer-dimer formation for PCR product detection by DNA hybridization
-
Leggate, J., and B. W. Blais. 2006. An internal amplification control system based on primer-dimer formation for PCR product detection by DNA hybridization. J. Food Prot. 69:2280-2284.
-
(2006)
J. Food Prot
, vol.69
, pp. 2280-2284
-
-
Leggate, J.1
Blais, B.W.2
-
34
-
-
58149183697
-
ARDB-Antibiotic resistance genes database
-
Liu, B., and M. Pop. 2009. ARDB-Antibiotic resistance genes database. Nucleic Acids Res. 37:D443-D447.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. D443-D447
-
-
Liu, B.1
Pop, M.2
-
35
-
-
64649104806
-
Novel CTX-M {beta}-lactamase genotype distribution and spread into multiple species of Enterobacteriaceae in Changsha Southern China
-
Liu, W., L. Chen, H. Li, H. Duan, Y. Zhang, X. Liang, X. Li, M. Zou, L. Xu, and P. M. Hawkey. 2009. Novel CTX-M {beta}-lactamase genotype distribution and spread into multiple species of Enterobacteriaceae in Changsha, Southern China. J. Antimicrob. Chemother. 63:895-900.
-
(2009)
J. Antimicrob. Chemother
, vol.63
, pp. 895-900
-
-
Liu, W.1
Chen, L.2
Li, H.3
Duan, H.4
Zhang, Y.5
Liang, X.6
Li, X.7
Zou, M.8
Xu, L.9
Hawkey, P.M.10
-
36
-
-
0022423077
-
Completion of the nucleotide sequence of the central region of Tn5 confirms the presence of three resistance genes
-
Mazodier, P., P. Cossart, E. Giraud, and F. Gasser. 1985. Completion of the nucleotide sequence of the central region of Tn5 confirms the presence of three resistance genes. Nucleic Acids Res. 13:195-205.
-
(1985)
Nucleic Acids Res
, vol.13
, pp. 195-205
-
-
Mazodier, P.1
Cossart, P.2
Giraud, E.3
Gasser, F.4
-
37
-
-
84879017399
-
The comprehensive antibiotic resistance database
-
McArthur, A. G., N. Waglechner, F. Nizam, A. Yan, M. A. Azad, A. J. Baylay, K. Bhullar, M. J. Canova, G. De Pascale, L. Ejim, L. Kalan, A. M. King, K. Koteva, M. Morar, M. R. Mulvey, J. S. O'Brien, A. C. Pawlowski, L. J. Piddock, P. Spanogiannopoulos, A. D. Sutherland, I. Tang, P. L. Taylor, M. Thaker, W. Wang, M. Yan, T. Yu, and G. D. Wright. 2013. The comprehensive antibiotic resistance database. Antimicrob. Agents Chemother. 57:3348-3357.
-
(2013)
Antimicrob. Agents Chemother
, vol.57
, pp. 3348-3357
-
-
McArthur, A.G.1
Waglechner, N.2
Nizam, F.3
Yan, A.4
Azad, M.A.5
Baylay, A.J.6
Bhullar, K.7
Canova, M.J.8
De Pascale, G.9
Ejim, L.10
Kalan, L.11
King, A.M.12
Koteva, K.13
Morar, M.14
Mulvey, M.R.15
O'Brien, J.S.16
Pawlowski, A.C.17
Piddock, L.J.18
Spanogiannopoulos, P.19
Sutherland, A.D.20
Tang, I.21
Taylor, P.L.22
Thaker, M.23
Wang, W.24
Yan, M.25
Yu, T.26
Wright, G.D.27
more..
-
38
-
-
84860457128
-
Distribution of class 1 integrons among enteropathogenic Escherichia coli
-
Najibi, S., B. Bakhshi, S. Fallahzad, M. R. Pourshafie, M. Katouli, M. Sattari, M. Alebouyeh, and M. Tajbakhsh. 2012. Distribution of class 1 integrons among enteropathogenic Escherichia coli. Can. J. Microbiol. 58:637-643.
-
(2012)
Can. J. Microbiol
, vol.58
, pp. 637-643
-
-
Najibi, S.1
Bakhshi, B.2
Fallahzad, S.3
Pourshafie, M.R.4
Katouli, M.5
Sattari, M.6
Alebouyeh, M.7
Tajbakhsh, M.8
-
39
-
-
0019469231
-
Nucleotide sequence of the kanamycin resistance transposon Tn903
-
Oka, A., H. Sugisaki, and M. Takanami. 1981. Nucleotide sequence of the kanamycin resistance transposon Tn903. J. Mol. Biol. 147:217-226.
-
(1981)
J. Mol. Biol
, vol.147
, pp. 217-226
-
-
Oka, A.1
Sugisaki, H.2
Takanami, M.3
-
40
-
-
80052150179
-
Origins of the E. Coli strain causing an outbreak of hemolytic-uremic syndrome in Germany
-
Rasko, D. A., D. R. Webster, J. W. Sahl, A. Bashir, N. Boisen, F. Scheutz, E. E. Paxinos, R. Sebra, C. S. Chin, D. Iliopoulos, A. Klammer, P. Peluso, L. Lee, A. O. Kislyuk, J. Bullard, A. Kasarskis, S. Wang, J. Eid, D. Rank, J. C. Redman, S. R. Steyert, J. Frimodt-Møller, C. Struve, A. M. Petersen, K. A. Krogfelt, J. P. Nataro, E. E. Schadt, and M. K. Waldor. 2011. Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany. N. Engl. J. Med. 365:709-717.
-
(2011)
N. Engl. J. Med
, vol.365
, pp. 709-717
-
-
Rasko, D.A.1
Webster, D.R.2
Sahl, J.W.3
Bashir, A.4
Boisen, N.5
Scheutz, F.6
Paxinos, E.E.7
Sebra, R.8
Chin, C.S.9
Iliopoulos, D.10
Klammer, A.11
Peluso, P.12
Lee, L.13
Kislyuk, A.O.14
Bullard, J.15
Kasarskis, A.16
Wang, S.17
Eid, J.18
Rank, D.19
Redman, J.C.20
Steyert, S.R.21
Frimodt-Møller, J.22
Struve, C.23
Petersen, A.M.24
Krogfelt, K.A.25
Nataro, J.P.26
Schadt, E.E.27
Waldor, M.K.28
more..
-
41
-
-
0027371912
-
Analysis of the aac(3)-VIa gene encoding a novel 3-N-Acetyltransferase
-
Rather, P. N., P. A. Mann, R. Mierzwa, R. S. Hare, G. H. Miller, and K. J. Shaw. 1993. Analysis of the aac(3)-VIa gene encoding a novel 3-N-Acetyltransferase. Antimicrob. Agents Chemother. 37:2074-2079.
-
(1993)
Antimicrob. Agents Chemother
, vol.37
, pp. 2074-2079
-
-
Rather, P.N.1
Mann, P.A.2
Mierzwa, R.3
Hare, R.S.4
Miller, G.H.5
Shaw, K.J.6
-
42
-
-
46049091934
-
Class 1 integrons in multidrug-resistant nontyphoidal Salmonella enterica isolated in Spain between 2002 and 2004
-
Rodríguez, I., M. R. Rodicio, S. Herrera-León, A. Echeita, and M. C. Mendoza. 2008. Class 1 integrons in multidrug-resistant nontyphoidal Salmonella enterica isolated in Spain between 2002 and 2004. Int. J. Antimicrob. Agents 32:158-164.
-
(2008)
Int. J. Antimicrob. Agents
, vol.32
, pp. 158-164
-
-
Rodríguez, I.1
Rodicio, M.R.2
Herrera-León, S.3
Echeita, A.4
Mendoza, M.C.5
-
43
-
-
84941352851
-
Search engine for antimicrobial resistance: A cloud compatible pipeline and web interface for rapidly detecting antimicrobial resistance genes directly from sequence data
-
Rowe, W., K. S. Baker, D. Verner-Jeffreys, C. Baker-Austin, J. J. Ryan, D. Maskell, and G. Pearce. 2015. Search engine for antimicrobial resistance: a cloud compatible pipeline and web interface for rapidly detecting antimicrobial resistance genes directly from sequence data. PLoS One 10:e0133492.
-
(2015)
PLoS One
, vol.10
, pp. e0133492
-
-
Rowe, W.1
Baker, K.S.2
Verner-Jeffreys, D.3
Baker-Austin, C.4
Ryan, J.J.5
Maskell, D.6
Pearce, G.7
-
44
-
-
0032762779
-
Novel streptomycin and spectinomycin resistance gene as a gene cassette within a class 1 integron isolated from Escherichia coli
-
Sandvang, D. 1999. Novel streptomycin and spectinomycin resistance gene as a gene cassette within a class 1 integron isolated from Escherichia coli. Antimicrob. Agents Chemother. 43:3036-3038.
-
(1999)
Antimicrob. Agents Chemother
, vol.43
, pp. 3036-3038
-
-
Sandvang, D.1
-
45
-
-
0037378797
-
Integron-containing IncU R plasmids pRAS1 and pAr-32 from the fish pathogen Aeromonas salmonicida
-
Sørum, H., T. M. L'Abée-Lund, A. Solberg, and A. Wold. 2003. Integron-containing IncU R plasmids pRAS1 and pAr-32 from the fish pathogen Aeromonas salmonicida. Antimicrob. Agents Chemother. 47:1285-1290.
-
(2003)
Antimicrob. Agents Chemother
, vol.47
, pp. 1285-1290
-
-
Sørum, H.1
L'Abée-Lund, T.M.2
Solberg, A.3
Wold, A.4
-
46
-
-
0036631510
-
Distinct recent lineages of the strA-strB streptomycin-resistance genes in clinical and environmental bacteria
-
Sundin, G. W. 2002. Distinct recent lineages of the strA-strB streptomycin-resistance genes in clinical and environmental bacteria. Curr. Microbiol. 45:63-69.
-
(2002)
Curr. Microbiol
, vol.45
, pp. 63-69
-
-
Sundin, G.W.1
-
47
-
-
0028883119
-
A new dhfrVIII trimethoprimresistance gene, flanked by IS26, whose product is remote from other dihydrofolate reductases in parsimony analysis
-
Sundström, L., C. Jansson, K. Bremer, E. Heikkilä, B. Olsson-Liljequist, and O. Sköld. 1995. A new dhfrVIII trimethoprimresistance gene, flanked by IS26, whose product is remote from other dihydrofolate reductases in parsimony analysis. Gene 154:7-14.
-
(1995)
Gene
, vol.154
, pp. 7-14
-
-
Sundström, L.1
Jansson, C.2
Bremer, K.3
Heikkilä, E.4
Olsson-Liljequist, B.5
Sköld, O.6
-
48
-
-
0023747576
-
Sitespecific recombination promotes linkage between trimethoprim-And sulfonamide resistance genes. Sequence characterization of dhfrV and sulI and a recombination active locus of Tn21
-
Sundström, L., P. Radström, G. Swedberg, and O. Sköld. 1988. Sitespecific recombination promotes linkage between trimethoprim-And sulfonamide resistance genes. Sequence characterization of dhfrV and sulI and a recombination active locus of Tn21. Mol. Gen. Genet. 213:191-201.
-
(1988)
Mol. Gen. Genet
, vol.213
, pp. 191-201
-
-
Sundström, L.1
Radström, P.2
Swedberg, G.3
Sköld, O.4
-
49
-
-
79961209180
-
Sequencing and comparative analysis of IncP-1a antibiotic resistance plasmids reveal a highly conserved backbone and differences within accessory regions
-
Szczepanowski, R., F. Eikmeyer, J. Harfmann, J. Blom, L. M. Rogers, E. M. Top, and A. Schlüter. 2011. Sequencing and comparative analysis of IncP-1a antibiotic resistance plasmids reveal a highly conserved backbone and differences within accessory regions. J. Biotechnol. 155:95-103.
-
(2011)
J. Biotechnol
, vol.155
, pp. 95-103
-
-
Szczepanowski, R.1
Eikmeyer, F.2
Harfmann, J.3
Blom, J.4
Rogers, L.M.5
Top, E.M.6
Schlüter, A.7
-
50
-
-
15244348050
-
Shiga-Toxinproducing Escherichia coli and haemolytic uraemic syndrome
-
Tarr, P. I., C. A. Gordon, and W. L. Chandler. 2005. Shiga-Toxinproducing Escherichia coli and haemolytic uraemic syndrome. Lancet 365:1073-1086.
-
(2005)
Lancet
, vol.365
, pp. 1073-1086
-
-
Tarr, P.I.1
Gordon, C.A.2
Chandler, W.L.3
-
51
-
-
84943793968
-
WGS accurately predicts antimicrobial resistance in Escherichia coli
-
Tyson, G. H., P. F. McDermott, C. Li, Y. Chen, D. A. Tadesse, S. Mukherjee, S. Bodeis-Jones, C. Kabera, S. A. Gaines, G. H. Loneragan, T. S. Edrington, M. Torrence, D. M. Harhay, and S. Zhao. 2015. WGS accurately predicts antimicrobial resistance in Escherichia coli. J. Antimicrob. Chemother. 70:2763-2769.
-
(2015)
J. Antimicrob. Chemother
, vol.70
, pp. 2763-2769
-
-
Tyson, G.H.1
McDermott, P.F.2
Li, C.3
Chen, Y.4
Tadesse, D.A.5
Mukherjee, S.6
Bodeis-Jones, S.7
Kabera, C.8
Gaines, S.A.9
Loneragan, G.H.10
Edrington, T.S.11
Torrence, M.12
Harhay, D.M.13
Zhao, S.14
-
52
-
-
84855428583
-
Shiga toxin-producing Escherichia coli in certain raw beef. Docket no. FSIS-2010-0023
-
U.S. Department of Agriculture Food Safety and Inspection Service USDA-FSIS. Accessed 1 April 2016
-
U.S. Department of Agriculture, Food Safety and Inspection Service (USDA-FSIS). 2011. Shiga toxin-producing Escherichia coli in certain raw beef. Docket no. FSIS-2010-0023. Fed. Reg. 76:58157-58165. Available at: http://www.fsis.usda.gov/OPPDE/rdad/FRPubs/2010-0023.htm. Accessed 1 April 2016.
-
(2011)
Fed. Reg
, vol.76
, pp. 58157-58165
-
-
-
53
-
-
84998583427
-
-
U.S. Food, Drug Administration. Accessed 2 April 2016
-
U.S. Food and Drug Administration. 2016. Joining and using the Genome Trakr Network. Available at: http://www.fda.gov/Food/FoodScienceResearch/WholeGenomeSequencingProgramWGS/ucm363134.htm. Accessed 2 April 2016.
-
(2016)
Joining and Using the Genome Trakr Network
-
-
-
54
-
-
68549122606
-
Association of virulence plasmid and antibiotic resistance determinants with chromosomal multilocus genotypes in Mexican Salmonella enterica serovar Typhimurium strains
-
Wiesner, M., M. B. Zaidi, E. Calva, M. Fernández-Mora, J. J. Calva, and C. Silva. 2009. Association of virulence plasmid and antibiotic resistance determinants with chromosomal multilocus genotypes in Mexican Salmonella enterica serovar Typhimurium strains. BMC Microbiol. 9:131.
-
(2009)
BMC Microbiol
, vol.9
, pp. 131
-
-
Wiesner, M.1
Zaidi, M.B.2
Calva, E.3
Fernández-Mora, M.4
Calva, J.J.5
Silva, C.6
-
55
-
-
33745282930
-
Sex and virulence in Escherichia coli: An evolutionary perspective
-
Wirth, T., D. Falush, R. Lan, F. Colles, P. Mensa, L. H. Wieler, H. Karch, P. R. Reeves, M. C. Maiden, H. Ochman, and M. Achtman. 2006. Sex and virulence in Escherichia coli: an evolutionary perspective. Mol. Microbiol. 60:1136-1151.
-
(2006)
Mol. Microbiol
, vol.60
, pp. 1136-1151
-
-
Wirth, T.1
Falush, D.2
Lan, R.3
Colles, F.4
Mensa, P.5
Wieler, L.H.6
Karch, H.7
Reeves, P.R.8
Maiden, M.C.9
Ochman, H.10
Achtman, M.11
-
56
-
-
84991475137
-
ARGs-OAP: Online analysis pipeline for antibiotic resistance genes detection from metagenomic data using an integrated structured ARG-database
-
Yang, Y., X. Jiang, B. Chai, L. Ma, B. Li, A. Zhang, J. R. Cole, J. M. Tiedje, and T. Zhang. 2016. ARGs-OAP: online analysis pipeline for antibiotic resistance genes detection from metagenomic data using an integrated structured ARG-database. Bioinformatics. doi:10.1093/bioinformatics/btw136.
-
(2016)
Bioinformatics
-
-
Yang, Y.1
Jiang, X.2
Chai, B.3
Ma, L.4
Li, B.5
Zhang, A.6
Cole, J.R.7
Tiedje, J.M.8
Zhang, T.9
-
57
-
-
84862245279
-
Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction
-
Ye, J., G. Coulouris, I. Zaretskaya, I. Cutcutache, S. Rozen, and T. L. Madden. 2012. Primer-BLAST: a tool to design target-specific primers for polymerase chain reaction. BMC Bioinformatics 13:134.
-
(2012)
BMC Bioinformatics
, vol.13
, pp. 134
-
-
Ye, J.1
Coulouris, G.2
Zaretskaya, I.3
Cutcutache, I.4
Rozen, S.5
Madden, T.L.6
-
58
-
-
84867587461
-
Identification of acquired antimicrobial resistance genes
-
Zankari, E., H. Hasman, S. Cosentino, M. Vestergaard, S. Rasmussen, O. Lund, F. M. Aarestrup, and M. V. Larsen. 2012. Identification of acquired antimicrobial resistance genes. J. Antimicrob. Chemother. 67:2640-2644.
-
(2012)
J. Antimicrob. Chemother
, vol.67
, pp. 2640-2644
-
-
Zankari, E.1
Hasman, H.2
Cosentino, S.3
Vestergaard, M.4
Rasmussen, S.5
Lund, O.6
Aarestrup, F.M.7
Larsen, M.V.8
-
59
-
-
79952104933
-
Phenotypic and genotypic characterization of b-lactam resistance in Klebsiella pneumoniae isolated from swine
-
Zou, L. K., H. N. Wang, B. Zeng, A. Y. Zhang, J. N. Li, X. T. Li, G. B. Tian, K. Wei, Y. S. Zhou, C. W. Xu, and Z. R. Yang. 2011. Phenotypic and genotypic characterization of b-lactam resistance in Klebsiella pneumoniae isolated from swine. Vet. Microbiol. 149:139-146.
-
(2011)
Vet. Microbiol
, vol.149
, pp. 139-146
-
-
Zou, L.K.1
Wang, H.N.2
Zeng, B.3
Zhang, A.Y.4
Li, J.N.5
Li, X.T.6
Tian, G.B.7
Wei, K.8
Zhou, Y.S.9
Xu, C.W.10
Yang, Z.R.11
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