-
1
-
-
0142059593
-
Polyhydroxyalkanoate (PHA) homeostasis: The role of the PHA synthase
-
Stubbe, J., and Tian, J. (2003) Polyhydroxyalkanoate (PHA) homeostasis: the role of the PHA synthase. Nat. Prod. Rep. 20, 445-457
-
(2003)
Nat. Prod. Rep.
, vol.20
, pp. 445-457
-
-
Stubbe, J.1
Tian, J.2
-
2
-
-
22244459223
-
Nontemplate-dependent polymerization processes: Polyhydroxyalkanoate synthases as a paradigm
-
Stubbe, J., Tian, J., He, A., Sinskey, A. J., Lawrence, A. G., and Liu, P. (2005) Nontemplate-dependent polymerization processes: polyhydroxyalkanoate synthases as a paradigm. Annu. Rev. Biochem. 74, 433-480
-
(2005)
Annu. Rev. Biochem.
, vol.74
, pp. 433-480
-
-
Stubbe, J.1
Tian, J.2
He, A.3
Sinskey, A.J.4
Lawrence, A.G.5
Liu, P.6
-
3
-
-
0029018968
-
Diversity of bacterial polyhydroxyalkanoic acids
-
Steinbuchel, A., and Valentin, H. E. (1995) Diversity of bacterial polyhydroxyalkanoic acids. FEMS Microbiol. Lett. 128, 219-228
-
(1995)
FEMS Microbiol. Lett.
, vol.128
, pp. 219-228
-
-
Steinbuchel, A.1
Valentin, H.E.2
-
4
-
-
0034501647
-
Synthesis, structure and properties of polyhydroxyalkanoates: Biological polyesters
-
Sudesh, K., Abe, H., and Doi, Y. (2000) Synthesis, structure and properties of polyhydroxyalkanoates: biological polyesters. Prog. Polym. Sci. 25, 1503-1555
-
(2000)
Prog. Polym. Sci.
, vol.25
, pp. 1503-1555
-
-
Sudesh, K.1
Abe, H.2
Doi, Y.3
-
5
-
-
0347241168
-
Perspectives for biotechnological production and utilization of biopolymers: Metabolic engineering of polyhydroxyalkanoate biosynthesis pathways as a successful example
-
Steinbuchel, A. (2001) Perspectives for biotechnological production and utilization of biopolymers: metabolic engineering of polyhydroxyalkanoate biosynthesis pathways as a successful example. Macromol. Biosci. 1, 1-24
-
(2001)
Macromol. Biosci.
, vol.1
, pp. 1-24
-
-
Steinbuchel, A.1
-
6
-
-
77952955154
-
Polyhydroxyalkanoates: Bioplastics with a green agenda
-
Keshavarz, T., and Roy, I. (2010) Polyhydroxyalkanoates: bioplastics with a green agenda. Curr. Opin. Microbiol. 13, 321-326
-
(2010)
Curr. Opin. Microbiol.
, vol.13
, pp. 321-326
-
-
Keshavarz, T.1
Roy, I.2
-
7
-
-
0345688125
-
Polyester synthases: Natural catalysts for plastics
-
Rehm, B. H. (2003) Polyester synthases: natural catalysts for plastics. Biochem. J. 376, 15-33
-
(2003)
Biochem. J.
, vol.376
, pp. 15-33
-
-
Rehm, B.H.1
-
8
-
-
0035969944
-
Mechanistic studies on class I polyhydroxybutyrate (PHB) synthase from Ralstonia eutropha: Class I and III synthases share a similar catalytic mechanism
-
Jia, Y., Yuan, W., Wodzinska, J., Park, C., Sinskey, A. J., and Stubbe, J. (2001) Mechanistic studies on class I polyhydroxybutyrate (PHB) synthase from Ralstonia eutropha: class I and III synthases share a similar catalytic mechanism. Biochemistry 40, 1011-1019
-
(2001)
Biochemistry
, vol.40
, pp. 1011-1019
-
-
Jia, Y.1
Yuan, W.2
Wodzinska, J.3
Park, C.4
Sinskey, A.J.5
Stubbe, J.6
-
9
-
-
0034636122
-
Lipases provide a new mechanistic model for polyhydroxybutyrate (PHB) synthases: Characterization of the functional residues in Chromatium vinosum PHB synthase
-
Jia, Y., Kappock, T. J., Frick, T., Sinskey, A. J., and Stubbe, J. (2000) Lipases provide a new mechanistic model for polyhydroxybutyrate (PHB) synthases: characterization of the functional residues in Chromatium vinosum PHB synthase. Biochemistry 39, 3927-3936
-
(2000)
Biochemistry
, vol.39
, pp. 3927-3936
-
-
Jia, Y.1
Kappock, T.J.2
Frick, T.3
Sinskey, A.J.4
Stubbe, J.5
-
10
-
-
0037203912
-
Molecular characterization of the poly(3-hydroxybutyrate) (PHB) synthase from Ralstonia eutropha: In vitro evolution, site-specific mutagenesis and development of a PHB synthase protein model
-
Rehm, B. H., Antonio, R. V., Spiekermann, P., Amara, A. A., and Steinbüchel, A. (2002) Molecular characterization of the poly(3-hydroxybutyrate) (PHB) synthase from Ralstonia eutropha: in vitro evolution, site-specific mutagenesis and development of a PHB synthase protein model. Biochim. Biophys. Acta 1594, 178-190
-
(2002)
Biochim. Biophys. Acta
, vol.1594
, pp. 178-190
-
-
Rehm, B.H.1
Antonio, R.V.2
Spiekermann, P.3
Amara, A.A.4
Steinbüchel, A.5
-
11
-
-
0035477449
-
Class I and III polyhydroxyalkanoate synthases from Ralstonia eutropha and Allochromatium vinosum: Characterization and substrate specificity studies
-
Yuan, W., Jia, Y., Tian, J., Snell, K. D., Müh, U., Sinskey, A. J., Lambalot, R. H., Walsh, C. T., and Stubbe, J. (2001) Class I and III polyhydroxyalkanoate synthases from Ralstonia eutropha and Allochromatium vinosum: characterization and substrate specificity studies. Arch. Biochem. Biophys. 394, 87-98
-
(2001)
Arch. Biochem. Biophys.
, vol.394
, pp. 87-98
-
-
Yuan, W.1
Jia, Y.2
Tian, J.3
Snell, K.D.4
Müh, U.5
Sinskey, A.J.6
Lambalot, R.H.7
Walsh, C.T.8
Stubbe, J.9
-
12
-
-
0029049968
-
Enzyme-catalyzed synthesis of poly[(R)-(-)-3-hydroxybutyrate]: Formation of macroscopic granules in vitro
-
Gerngross, T. U., and Martin, D. P. (1995) Enzyme-catalyzed synthesis of poly[(R)-(-)-3-hydroxybutyrate]: formation of macroscopic granules in vitro. Proc. Natl. Acad. Sci. U.S.A. 92, 6279-6283
-
(1995)
Proc. Natl. Acad. Sci. U.S.A.
, vol.92
, pp. 6279-6283
-
-
Gerngross, T.U.1
Martin, D.P.2
-
13
-
-
0027933456
-
Overexpression and purification of the soluble polyhydroxyalkanoate synthase from Alcaligenes eutrophus: Evidence for a required posttranslational modification for catalytic activity
-
Gerngross, T. U., Snell, K. D., Peoples, O. P., Sinskey, A. J., Csuhai, E., Masamune, S., and Stubbe, J. (1994) Overexpression and purification of the soluble polyhydroxyalkanoate synthase from Alcaligenes eutrophus: evidence for a required posttranslational modification for catalytic activity. Biochemistry 33, 9311-9320
-
(1994)
Biochemistry
, vol.33
, pp. 9311-9320
-
-
Gerngross, T.U.1
Snell, K.D.2
Peoples, O.P.3
Sinskey, A.J.4
Csuhai, E.5
Masamune, S.6
Stubbe, J.7
-
14
-
-
0030059466
-
Polyhydroxybutyrate synthase: Evidence for covalent catalysis
-
Wodzinska, J., Snell, K. D., Rhomberg, A., Sinskey, A. J., Biemann, K., and Stubbe, J. (1996) Polyhydroxybutyrate synthase: Evidence for covalent catalysis. J. Am. Chem. Soc. 118, 6319-6320
-
(1996)
J. Am. Chem. Soc.
, vol.118
, pp. 6319-6320
-
-
Wodzinska, J.1
Snell, K.D.2
Rhomberg, A.3
Sinskey, A.J.4
Biemann, K.5
Stubbe, J.6
-
15
-
-
0034209253
-
Kinetic and mechanistic characterization of the polyhydroxybutyrate synthase from Ralstonia eutropha
-
Zhang, S., Yasuo, T., Lenz, R. W., and Goodwin, S. (2000) Kinetic and mechanistic characterization of the polyhydroxybutyrate synthase from Ralstonia eutropha. Biomacromolecules 1, 244-251
-
(2000)
Biomacromolecules
, vol.1
, pp. 244-251
-
-
Zhang, S.1
Yasuo, T.2
Lenz, R.W.3
Goodwin, S.4
-
16
-
-
0026714866
-
Cloning and nucleotide sequences of genes relevant for biosynthesis of poly(3-hydroxybutyric acid) in Chromatium vinosum strain D
-
Liebergesell, M., and Steinbüchel, A. (1992) Cloning and nucleotide sequences of genes relevant for biosynthesis of poly(3-hydroxybutyric acid) in Chromatium vinosum strain D. Eur. J. Biochem. 209, 135-150
-
(1992)
Eur. J. Biochem.
, vol.209
, pp. 135-150
-
-
Liebergesell, M.1
Steinbüchel, A.2
-
17
-
-
0038450995
-
PHA synthase from Chromatium vinosum: Cysteine 149 is involved in covalent catalysis
-
Müh, U., Sinskey, A. J., Kirby, D. P., Lane, W. S., and Stubbe, J. (1999) PHA synthase from Chromatium vinosum: cysteine 149 is involved in covalent catalysis. Biochemistry 38, 826-837
-
(1999)
Biochemistry
, vol.38
, pp. 826-837
-
-
Müh, U.1
Sinskey, A.J.2
Kirby, D.P.3
Lane, W.S.4
Stubbe, J.5
-
18
-
-
13444263508
-
Detection of intermediates from the polymerization reaction catalyzed by a D302A mutant of class III polyhydroxyalkanoate (PHA) synthase
-
Tian, J., Sinskey, A. J., and Stubbe, J. (2005) Detection of intermediates from the polymerization reaction catalyzed by a D302A mutant of class III polyhydroxyalkanoate (PHA) synthase. Biochemistry 44, 1495-1503
-
(2005)
Biochemistry
, vol.44
, pp. 1495-1503
-
-
Tian, J.1
Sinskey, A.J.2
Stubbe, J.3
-
19
-
-
0014340156
-
Metabolism of poly-β-hydroxybutyrate: I. Purification, composition, and properties of native poly-β-hydroxybutyrate granules from Bacillus megaterium
-
Griebel, R., Smith, Z., and Merrick, J. M. (1968) Metabolism of poly-β-hydroxybutyrate: I. purification, composition, and properties of native poly-β-hydroxybutyrate granules from Bacillus megaterium. Biochemistry 7, 3676-3681
-
(1968)
Biochemistry
, vol.7
, pp. 3676-3681
-
-
Griebel, R.1
Smith, Z.2
Merrick, J.M.3
-
20
-
-
70349626053
-
Detection of covalent and noncovalent intermediates in the polymerization reaction catalyzed by a C149S class III polyhydroxybutyrate synthase
-
Li, P., Chakraborty, S., and Stubbe, J. (2009) Detection of covalent and noncovalent intermediates in the polymerization reaction catalyzed by a C149S class III polyhydroxybutyrate synthase. Biochemistry 48, 9202-9211
-
(2009)
Biochemistry
, vol.48
, pp. 9202-9211
-
-
Li, P.1
Chakraborty, S.2
Stubbe, J.3
-
21
-
-
84929572189
-
Trapping of intermediates with substrate analog HBOCoA in the polymerizations catalyzed by class III polyhydroxybutyrate (PHB) synthase from Allochromatium vinosum
-
Chen, C., Cao, R., Shrestha, R., Ward, C., Katz, B. B., Fischer, C. J., Tomich, J. M., and Li, P. (2015) Trapping of intermediates with substrate analog HBOCoA in the polymerizations catalyzed by class III polyhydroxybutyrate (PHB) synthase from Allochromatium vinosum. ACS Chem. Biol. 10, 1330-1339
-
(2015)
ACS Chem. Biol.
, vol.10
, pp. 1330-1339
-
-
Chen, C.1
Cao, R.2
Shrestha, R.3
Ward, C.4
Katz, B.B.5
Fischer, C.J.6
Tomich, J.M.7
Li, P.8
-
22
-
-
84964203355
-
Chemistry with an artificial primer of polyhydroxybutyrate synthase suggests a mechanism for chain termination
-
Buckley, R. M., and Stubbe, J. (2015) Chemistry with an artificial primer of polyhydroxybutyrate synthase suggests a mechanism for chain termination. Biochemistry 54, 2117-2125
-
(2015)
Biochemistry
, vol.54
, pp. 2117-2125
-
-
Buckley, R.M.1
Stubbe, J.2
-
23
-
-
0028151543
-
Purification and characterization of the poly(hydroxyalkanoic acid) synthase from Chromatium vinosum and localization of the enzyme at the surface of poly(hydroxyalkanoic acid) granules
-
Liebergesell, M., Sonomoto, K., Madkour, M., Mayer, F., and Steinbüchel, A. (1994) Purification and characterization of the poly(hydroxyalkanoic acid) synthase from Chromatium vinosum and localization of the enzyme at the surface of poly(hydroxyalkanoic acid) granules. Eur. J. Biochem. 226, 71-80
-
(1994)
Eur. J. Biochem.
, vol.226
, pp. 71-80
-
-
Liebergesell, M.1
Sonomoto, K.2
Madkour, M.3
Mayer, F.4
Steinbüchel, A.5
-
24
-
-
84893460687
-
Critical residues of class II PHA synthase for expanding the substrate specificity and enhancing the biosynthesis of polyhydroxyalkanoate
-
Chen, Y. J., Tsai, P. C., Hsu, C. H., and Lee, C. Y. (2014) Critical residues of class II PHA synthase for expanding the substrate specificity and enhancing the biosynthesis of polyhydroxyalkanoate. Enzyme Microb. Technol. 56, 60-66
-
(2014)
Enzyme Microb. Technol.
, vol.56
, pp. 60-66
-
-
Chen, Y.J.1
Tsai, P.C.2
Hsu, C.H.3
Lee, C.Y.4
-
26
-
-
0026540411
-
The α/β hydrolase fold
-
Ollis, D. L., Cheah, E., Cygler, M., Dijkstra, B., Frolow, F., Franken, S. M., Harel, M., Remington, S. J., Silman, I., and Schrag, J. (1992) The α/β hydrolase fold. Protein Eng. 5, 197-211
-
(1992)
Protein Eng.
, vol.5
, pp. 197-211
-
-
Ollis, D.L.1
Cheah, E.2
Cygler, M.3
Dijkstra, B.4
Frolow, F.5
Franken, S.M.6
Harel, M.7
Remington, S.J.8
Silman, I.9
Schrag, J.10
-
27
-
-
0034285515
-
α/β-Hydrolase fold enzymes: Structures, functions and mechanisms
-
Holmquist, M. (2000) α/β-Hydrolase fold enzymes: structures, functions and mechanisms. Curr. Protein Pept. Sci. 1, 209-235
-
(2000)
Curr. Protein Pept. Sci.
, vol.1
, pp. 209-235
-
-
Holmquist, M.1
-
28
-
-
84868156224
-
CAVER 3.0: A tool for the analysis of transport pathways in dynamic protein structures
-
Chovancova, E., Pavelka, A., Benes, P., Strnad, O., Brezovsky, J., Kozlikova, B., Gora, A., Sustr, V., Klvana, M., Medek, P., Biedermannova, L., Sochor, J., and Damborsky, J. (2012) CAVER 3.0: a tool for the analysis of transport pathways in dynamic protein structures. PLoS Comput. Biol. 8, e1002708
-
(2012)
PLoS Comput. Biol.
, vol.8
-
-
Chovancova, E.1
Pavelka, A.2
Benes, P.3
Strnad, O.4
Brezovsky, J.5
Kozlikova, B.6
Gora, A.7
Sustr, V.8
Klvana, M.9
Medek, P.10
Biedermannova, L.11
Sochor, J.12
Damborsky, J.13
-
29
-
-
84969132700
-
Structural and biochemical characterisation of Archaeoglobus fulgidus esterase reveals a bound CoA molecule in the vicinity of the active site
-
Sayer, C., Finnigan, W., Isupov, M. N., Levisson, M., Kengen, S. W., van der Oost, J., Harmer, N. J., and Littlechild, J. A. (2016) Structural and biochemical characterisation of Archaeoglobus fulgidus esterase reveals a bound CoA molecule in the vicinity of the active site. Sci. Rep. 6, 25542
-
(2016)
Sci. Rep.
, vol.6
, pp. 25542
-
-
Sayer, C.1
Finnigan, W.2
Isupov, M.N.3
Levisson, M.4
Kengen, S.W.5
Van Der Oost, J.6
Harmer, N.J.7
Littlechild, J.A.8
-
30
-
-
84874104779
-
New insights into activation and substrate recognition of polyhydroxyalkanoate synthase from Ralstonia eutropha
-
Ushimaru, K., Sangiambut, S., Thomson, N., Sivaniah, E., and Tsuge, T. (2013) New insights into activation and substrate recognition of polyhydroxyalkanoate synthase from Ralstonia eutropha. Appl. Microbiol. Biotechnol. 97, 1175-1182
-
(2013)
Appl. Microbiol. Biotechnol.
, vol.97
, pp. 1175-1182
-
-
Ushimaru, K.1
Sangiambut, S.2
Thomson, N.3
Sivaniah, E.4
Tsuge, T.5
-
31
-
-
0037127266
-
Crystal structure of the open form of dog gastric lipase in complex with a phosphonate inhibitor
-
Roussel, A., Miled, N., Berti-Dupuis, L., Rivière, M., Spinelli, S., Berna, P., Gruber, V., Verger, R., and Cambillau, C. (2002) Crystal structure of the open form of dog gastric lipase in complex with a phosphonate inhibitor. J. Biol. Chem. 277, 2266-2274
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 2266-2274
-
-
Roussel, A.1
Miled, N.2
Berti-Dupuis, L.3
Rivière, M.4
Spinelli, S.5
Berna, P.6
Gruber, V.7
Verger, R.8
Cambillau, C.9
-
32
-
-
84961230953
-
Crystal structure of the Saccharomyces cerevisiae monoglyceride lipase Yju3p
-
Aschauer, P., Rengachari, S., Lichtenegger, J., Schittmayer, M., Das, K. M., Mayer, N., Breinbauer, R., Birner-Gruenberger, R., Gruber, C. C., Zimmermann, R., Gruber, K., and Oberer, M. (2016) Crystal structure of the Saccharomyces cerevisiae monoglyceride lipase Yju3p. Biochim. Biophys. Acta 1861, 462-470
-
(2016)
Biochim. Biophys. Acta
, vol.1861
, pp. 462-470
-
-
Aschauer, P.1
Rengachari, S.2
Lichtenegger, J.3
Schittmayer, M.4
Das, K.M.5
Mayer, N.6
Breinbauer, R.7
Birner-Gruenberger, R.8
Gruber, C.C.9
Zimmermann, R.10
Gruber, K.11
Oberer, M.12
-
33
-
-
25844485493
-
X-ray snapshots of peptide processing in mutants of tricorn-interacting factor F1 from Thermoplasma acidophilum
-
Goettig, P., Brandstetter, H., Groll, M., Göhring, W., Konarev, P. V., Svergun, D. I., Huber, R., and Kim, J. S. (2005) X-ray snapshots of peptide processing in mutants of tricorn-interacting factor F1 from Thermoplasma acidophilum. J. Biol. Chem. 280, 33387-33396
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 33387-33396
-
-
Goettig, P.1
Brandstetter, H.2
Groll, M.3
Göhring, W.4
Konarev, P.V.5
Svergun, D.I.6
Huber, R.7
Kim, J.S.8
-
34
-
-
0032546740
-
Structural investigation of the cofactor-free chloroperoxidases
-
Hofmann, B., Tölzer, S., Pelletier, I., Altenbuchner, J., van Pée, K. H., and Hecht, H. J. (1998) Structural investigation of the cofactor-free chloroperoxidases. J. Mol. Biol. 279, 889-900
-
(1998)
J. Mol. Biol.
, vol.279
, pp. 889-900
-
-
Hofmann, B.1
Tölzer, S.2
Pelletier, I.3
Altenbuchner, J.4
Van Pée, K.H.5
Hecht, H.J.6
-
35
-
-
0030937806
-
A new concept for the mechanism of action of chymotrypsin: The role of the low-barrier hydrogen bond
-
Cassidy, C. S., Lin, J., and Frey, P. A. (1997) A new concept for the mechanism of action of chymotrypsin: the role of the low-barrier hydrogen bond. Biochemistry 36, 4576-4584
-
(1997)
Biochemistry
, vol.36
, pp. 4576-4584
-
-
Cassidy, C.S.1
Lin, J.2
Frey, P.A.3
-
36
-
-
0032566351
-
Correlations of the basicity of His 57 with transition state analogue binding, substrate reactivity, and the strength of the low-barrier hydrogen bond in chymotrypsin
-
Lin, J., Cassidy, C. S., and Frey, P. A. (1998) Correlations of the basicity of His 57 with transition state analogue binding, substrate reactivity, and the strength of the low-barrier hydrogen bond in chymotrypsin. Biochemistry 37, 11940-11948
-
(1998)
Biochemistry
, vol.37
, pp. 11940-11948
-
-
Lin, J.1
Cassidy, C.S.2
Frey, P.A.3
-
37
-
-
0032215111
-
Ester synthesis in lipase-catalyzed reactions
-
Yahya, A. R. M., Anderson, W. A., and Moo-Young, M. (1998) Ester synthesis in lipase-catalyzed reactions. Enzyme Microb. Technol. 23, 438-450
-
(1998)
Enzyme Microb. Technol.
, vol.23
, pp. 438-450
-
-
Yahya, A.R.M.1
Anderson, W.A.2
Moo-Young, M.3
-
38
-
-
80053257479
-
Biodiesel production using enzymatic transesterification: Current state and perspectives
-
Gog, A., Roman, M., Tosa, M., Paizs, C., and Irimie, F. D. (2012) Biodiesel production using enzymatic transesterification: current state and perspectives. Renew. Energ. 39, 10-16
-
(2012)
Renew. Energ.
, vol.39
, pp. 10-16
-
-
Gog, A.1
Roman, M.2
Tosa, M.3
Paizs, C.4
Irimie, F.D.5
-
39
-
-
84907813188
-
Mechanism of action of peptidoglycan O-acetyltransferase B involves a Ser-His-Asp catalytic triad
-
Moynihan, P. J., and Clarke, A. J. (2014) Mechanism of action of peptidoglycan O-acetyltransferase B involves a Ser-His-Asp catalytic triad. Biochemistry 53, 6243-6251
-
(2014)
Biochemistry
, vol.53
, pp. 6243-6251
-
-
Moynihan, P.J.1
Clarke, A.J.2
-
40
-
-
0028674466
-
Catalytic mechanism in papain family of cysteine peptidases
-
Storer, A. C., and Menard, R. (1994) Catalytic mechanism in papain family of cysteine peptidases. Methods Enzymol. 244, 486-500
-
(1994)
Methods Enzymol.
, vol.244
, pp. 486-500
-
-
Storer, A.C.1
Menard, R.2
-
41
-
-
84874238669
-
Intrinsic evolutionary constraints on protease structure, enzyme acylation, and the identity of the catalytic triad
-
Buller, A. R., and Townsend, C. A. (2013) Intrinsic evolutionary constraints on protease structure, enzyme acylation, and the identity of the catalytic triad. Proc. Natl. Acad. Sci. U.S.A. 110, E653-E661
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. E653-E661
-
-
Buller, A.R.1
Townsend, C.A.2
-
42
-
-
0028040716
-
A low-barrier hydrogen bond in the catalytic triad of serine proteases
-
Frey, P. A., Whitt, S. A., and Tobin, J. B. (1994) A low-barrier hydrogen bond in the catalytic triad of serine proteases. Science 264, 1927-1930
-
(1994)
Science
, vol.264
, pp. 1927-1930
-
-
Frey, P.A.1
Whitt, S.A.2
Tobin, J.B.3
-
43
-
-
33646371941
-
Low-barrier hydrogen bond hypothesis in the catalytic triad residue of serine proteases: Correlation between structural rearrangement and chemical shifts in the acylation process
-
Ishida, T. (2006) Low-barrier hydrogen bond hypothesis in the catalytic triad residue of serine proteases: correlation between structural rearrangement and chemical shifts in the acylation process. Biochemistry 45, 5413-5420
-
(2006)
Biochemistry
, vol.45
, pp. 5413-5420
-
-
Ishida, T.1
-
44
-
-
0141566477
-
Fast calculation of van der Waals volume as a sum of atomic and bond contributions and its application to drug compounds
-
Zhao, Y. H., Abraham, M. H., and Zissimos, A. M. (2003) Fast calculation of van der Waals volume as a sum of atomic and bond contributions and its application to drug compounds. J. Org. Chem. 68, 7368-7373
-
(2003)
J. Org. Chem.
, vol.68
, pp. 7368-7373
-
-
Zhao, Y.H.1
Abraham, M.H.2
Zissimos, A.M.3
-
45
-
-
18944368050
-
Analysis of transient polyhydroxybutyrate production in Wautersia eutropha H16 by quantitative Western analysis and transmission electron microscopy
-
Tian, J., He, A., Lawrence, A. G., Liu, P., Watson, N., Sinskey, A. J., and Stubbe, J. (2005) Analysis of transient polyhydroxybutyrate production in Wautersia eutropha H16 by quantitative Western analysis and transmission electron microscopy. J. Bacteriol. 187, 3825-3832
-
(2005)
J. Bacteriol.
, vol.187
, pp. 3825-3832
-
-
Tian, J.1
He, A.2
Lawrence, A.G.3
Liu, P.4
Watson, N.5
Sinskey, A.J.6
Stubbe, J.7
-
47
-
-
20444429432
-
Class III polyhydroxybutyrate synthase: Involvement in chain termination and reinitiation
-
Tian, J., Sinskey, A. J., and Stubbe, J. (2005) Class III polyhydroxybutyrate synthase: involvement in chain termination and reinitiation. Biochemistry 44, 8369-8377
-
(2005)
Biochemistry
, vol.44
, pp. 8369-8377
-
-
Tian, J.1
Sinskey, A.J.2
Stubbe, J.3
-
48
-
-
0032967138
-
Chain termination in polyhydroxyalkanoate synthesis: Involvement of exogenous hydroxy-compounds as chain transfer agents
-
Madden, L. A., Anderson, A. J., Shah, D. T., and Asrar, J. (1999) Chain termination in polyhydroxyalkanoate synthesis: involvement of exogenous hydroxy-compounds as chain transfer agents. Int. J. Biol. Macromol. 25, 43-53
-
(1999)
Int. J. Biol. Macromol.
, vol.25
, pp. 43-53
-
-
Madden, L.A.1
Anderson, A.J.2
Shah, D.T.3
Asrar, J.4
-
49
-
-
22944483150
-
In vitro analysis of the chain termination reaction in the synthesis of poly-(R)-β-hydroxybutyrate by the class III synthase from Allochromatium vinosum
-
Lawrence, A. G., Choi, J., Rha, C., Stubbe, J., and Sinskey, A. J. (2005) In vitro analysis of the chain termination reaction in the synthesis of poly-(R)-β-hydroxybutyrate by the class III synthase from Allochromatium vinosum. Biomacromolecules 6, 2113-2119
-
(2005)
Biomacromolecules
, vol.6
, pp. 2113-2119
-
-
Lawrence, A.G.1
Choi, J.2
Rha, C.3
Stubbe, J.4
Sinskey, A.J.5
-
51
-
-
77950793231
-
Experimental phasing with SHELXC/D/E: Combining chain tracing with density modification
-
Sheldrick, G. M. (2010) Experimental phasing with SHELXC/D/E: combining chain tracing with density modification. Acta Crystallogr. D 66, 479-485
-
(2010)
Acta Crystallogr. D
, vol.66
, pp. 479-485
-
-
Sheldrick, G.M.1
-
52
-
-
4644366388
-
HKL2MAP: A graphical user interface for macromolecular phasing with SHELX programs
-
Pape, T., and Schneider, T. R. (2004) HKL2MAP: a graphical user interface for macromolecular phasing with SHELX programs. J. Appl. Crystallogr. 37, 843-844
-
(2004)
J. Appl. Crystallogr.
, vol.37
, pp. 843-844
-
-
Pape, T.1
Schneider, T.R.2
-
53
-
-
76449098262
-
PHENIX: A comprehensive Python-based system for macromolecular structure solution
-
Adams, P. D., Afonine, P. V., Bunkóczi, G., Chen, V. B., Davis, I. W., Echols, N., Headd, J. J., Hung, L. W., Kapral, G. J., Grosse-Kunstleve, R. W., McCoy, A. J., Moriarty, N. W., Oeffner, R., Read, R. J., Richardson, D. C., et al. (2010) PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr. D 66, 213-221
-
(2010)
Acta Crystallogr. D
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkóczi, G.3
Chen, V.B.4
Davis, I.W.5
Echols, N.6
Headd, J.J.7
Hung, L.W.8
Kapral, G.J.9
Grosse-Kunstleve, R.W.10
McCoy, A.J.11
Moriarty, N.W.12
Oeffner, R.13
Read, R.J.14
Richardson, D.C.15
-
54
-
-
77949535720
-
Features and development of Coot
-
Emsley, P., Lohkamp, B., Scott, W. G., and Cowtan, K. (2010) Features and development of Coot. Acta Crystallogr. D 66, 486-501
-
(2010)
Acta Crystallogr. D
, vol.66
, pp. 486-501
-
-
Emsley, P.1
Lohkamp, B.2
Scott, W.G.3
Cowtan, K.4
-
55
-
-
33646260450
-
Optimal description of a protein structure in terms of multiple groups undergoing TLS motion
-
Painter, J., and Merritt, E. A. (2006) Optimal description of a protein structure in terms of multiple groups undergoing TLS motion. Acta Crystallogr. D 62, 439-450
-
(2006)
Acta Crystallogr. D
, vol.62
, pp. 439-450
-
-
Painter, J.1
Merritt, E.A.2
-
56
-
-
74549178560
-
MolProbity: All-atom structure validation for macromolecular crystallography
-
Chen, V. B., Arendall, W. B., 3rd, Headd, J. J., Keedy, D. A., Immormino, R. M., Kapral, G. J., Murray, L. W., Richardson, J. S., and Richardson, D. C. (2010) MolProbity: all-atom structure validation for macromolecular crystallography. Acta Crystallogr. D 66, 12-21
-
(2010)
Acta Crystallogr. D
, vol.66
, pp. 12-21
-
-
Chen, V.B.1
Arendall, W.B.2
Headd, J.J.3
Keedy, D.A.4
Immormino, R.M.5
Kapral, G.J.6
Murray, L.W.7
Richardson, J.S.8
Richardson, D.C.9
-
57
-
-
56649103902
-
Searching protein structure databases with DaliLite v.3
-
Holm, L., Kääriäinen, S., Rosenström, P., and Schenkel, A. (2008) Searching protein structure databases with DaliLite v.3. Bioinformatics 24, 2780-2781
-
(2008)
Bioinformatics
, vol.24
, pp. 2780-2781
-
-
Holm, L.1
Kääriäinen, S.2
Rosenström, P.3
Schenkel, A.4
-
58
-
-
34548232365
-
Inference of macromolecular assemblies from crystalline state
-
Krissinel, E., and Henrick, K. (2007) Inference of macromolecular assemblies from crystalline state. J. Mol. Biol. 372, 774-797
-
(2007)
J. Mol. Biol.
, vol.372
, pp. 774-797
-
-
Krissinel, E.1
Henrick, K.2
-
59
-
-
33747818007
-
CASTp: Computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues
-
Dundas, J., Ouyang, Z., Tseng, J., Binkowski, A., Turpaz, Y., and Liang, J. (2006) CASTp: computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues. Nucleic Acids Res. 34, W116-W118
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. W116-W118
-
-
Dundas, J.1
Ouyang, Z.2
Tseng, J.3
Binkowski, A.4
Turpaz, Y.5
Liang, J.6
-
60
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brünger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Crystallography & NMR system: A new software suite for macromolecular structure determination. Acta Crystallogr. D 54, 905-921
-
(1998)
Acta Crystallogr. D
, vol.54
, pp. 905-921
-
-
Brünger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
Read, R.J.11
Rice, L.M.12
Simonson, T.13
Warren, G.L.14
-
61
-
-
37049014272
-
Version 1.2 of the crystallography and NMR system
-
Brunger, A. T. (2007) Version 1.2 of the crystallography and NMR system. Nat. Protoc. 2, 2728-2733
-
(2007)
Nat. Protoc.
, vol.2
, pp. 2728-2733
-
-
Brunger, A.T.1
-
63
-
-
84884682632
-
Collaboration gets the most out of software
-
Morin, A., Eisenbraun, B., Key, J., Sanschagrin, P. C., Timony, M. A., Ottaviano, M., and Sliz, P. (2013) Collaboration gets the most out of software. eLife 2, e01456
-
(2013)
eLife
, vol.2
-
-
Morin, A.1
Eisenbraun, B.2
Key, J.3
Sanschagrin, P.C.4
Timony, M.A.5
Ottaviano, M.6
Sliz, P.7
-
64
-
-
0033546322
-
Crystal structure of human gastric lipase and model of lysosomal acid lipase, two lipolytic enzymes of medical interest
-
Roussel, A., Canaan, S., Egloff, M. P., Rivière, M., Dupuis, L., Verger, R., and Cambillau, C. (1999) Crystal structure of human gastric lipase and model of lysosomal acid lipase, two lipolytic enzymes of medical interest. J. Biol. Chem. 274, 16995-17002
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 16995-17002
-
-
Roussel, A.1
Canaan, S.2
Egloff, M.P.3
Rivière, M.4
Dupuis, L.5
Verger, R.6
Cambillau, C.7
-
65
-
-
76649126721
-
Crystal structure of the human monoacylglycerol lipase, a key actor in endocannabinoid signaling
-
Labar, G., Bauvois, C., Borel, F., Ferrer, J. L., Wouters, J., and Lambert, D. M. (2010) Crystal structure of the human monoacylglycerol lipase, a key actor in endocannabinoid signaling. ChemBioChem 11, 218-227
-
(2010)
ChemBioChem
, vol.11
, pp. 218-227
-
-
Labar, G.1
Bauvois, C.2
Borel, F.3
Ferrer, J.L.4
Wouters, J.5
Lambert, D.M.6
|