-
1
-
-
84866279660
-
Stress-induced mutation via DNA breaks in Escherichia coli: a molecular mechanism with implications for evolution and medicine
-
Rosenberg SM, Shee C, Frisch RL, Hastings PJ. 2012. Stress-induced mutation via DNA breaks in Escherichia coli: a molecular mechanism with implications for evolution and medicine. Bioessays 34:885-892. http://dx.doi.org/10.1002/bies.201200050
-
(2012)
Bioessays
, vol.34
, pp. 885-892
-
-
Rosenberg, S.M.1
Shee, C.2
Frisch, R.L.3
Hastings, P.J.4
-
2
-
-
85018221699
-
Double-strand-break repair, mutagenesis, and stress
-
de Bruijn FJ (ed), Wiley & Sons Publisher, Hoboken, NJ
-
Rogers E, Correa R, Barreto B, Bravo Núñez MA, Minnick PJ, Vera Cruz D, Xia J, Hastings PJ, Rosenberg SM. 2016. Double-strand-break repair, mutagenesis, and stress, p 185-195. In de Bruijn FJ (ed), Stress and environmental control of gene expression and adaptation in bacteria. Wiley & Sons Publisher, Hoboken, NJ
-
(2016)
Stress and environmental control of gene expression and adaptation in bacteria
, pp. 185-195
-
-
Rogers, E.1
Correa, R.2
Barreto, B.3
Bravo Núñez, M.A.4
Minnick, P.J.5
Vera Cruz, D.6
Xia, J.7
Hastings, P.J.8
Rosenberg, S.M.9
-
3
-
-
35148899681
-
Stress-induced mutagenesis in bacteria
-
Foster PL. 2007. Stress-induced mutagenesis in bacteria. Crit Rev Biochem Mol Biol 42:373-397. http://dx.doi.org/10.1080/10409230701648494
-
(2007)
Crit Rev Biochem Mol Biol
, vol.42
, pp. 373-397
-
-
Foster, P.L.1
-
4
-
-
35148861197
-
Stationary phase mutagenesis in B. subtilis: a paradigm to study genetic diversity programs in cells under stress
-
Robleto EA, Yasbin R, Ross C, Pedraza-Reyes M. 2007. Stationary phase mutagenesis in B. subtilis: a paradigm to study genetic diversity programs in cells under stress. Crit Rev Biochem Mol Biol 42:327-339. http://dx.doi.org/10.1080/10409230701597717
-
(2007)
Crit Rev Biochem Mol Biol
, vol.42
, pp. 327-339
-
-
Robleto, E.A.1
Yasbin, R.2
Ross, C.3
Pedraza-Reyes, M.4
-
5
-
-
34547770887
-
Causes and consequences ofDNArepair activity modulation during stationary phase in Escherichia coli
-
Saint-Ruf C, Pesut J, Sopta M, Matic I. 2007. Causes and consequences ofDNArepair activity modulation during stationary phase in Escherichia coli. Crit Rev Biochem Mol Biol 42:259-270. http://dx.doi.org/10.1080/10409230701495599
-
(2007)
Crit Rev Biochem Mol Biol
, vol.42
, pp. 259-270
-
-
Saint-Ruf, C.1
Pesut, J.2
Sopta, M.3
Matic, I.4
-
6
-
-
85018221345
-
How a large gene network couples mutagenic DNA break repair to stress in Escherichia coli
-
de Bruijn FJ (ed), Wiley & Sons Publisher, Hoboken, NJ
-
Rogers E, Bravo Núñez MA, Hastings PJ, Rosenberg SM. 2016. How a large gene network couples mutagenic DNA break repair to stress in Escherichia coli, p 570-576. In de Bruijn FJ (ed), Stress and environmental control of gene expression and adaptation in bacteria. Wiley & Sons Publisher, Hoboken, NJ
-
(2016)
Stress and environmental control of gene expression and adaptation in bacteria
, pp. 570-576
-
-
Rogers, E.1
Bravo Núñez, M.A.2
Hastings, P.J.3
Rosenberg, S.M.4
-
7
-
-
35148834805
-
Mutation as a stress response and the regulation of evolvability
-
Galhardo RS, Hastings PJ, Rosenberg SM. 2007. Mutation as a stress response and the regulation of evolvability. Crit Rev Biochem Mol Biol 42:399-435. http://dx.doi.org/10.1080/10409230701648502
-
(2007)
Crit Rev Biochem Mol Biol
, vol.42
, pp. 399-435
-
-
Galhardo, R.S.1
Hastings, P.J.2
Rosenberg, S.M.3
-
8
-
-
84884619829
-
The yeast environmental stress response regulates mutagenesis induced by proteotoxic stress
-
Shor E, Fox CA, Broach JR. 2013. The yeast environmental stress response regulates mutagenesis induced by proteotoxic stress. PLoS Genet 9:e1003680. http://dx.doi.org/10.1371/journal.pgen.1003680
-
(2013)
PLoS Genet
, vol.9
-
-
Shor, E.1
Fox, C.A.2
Broach, J.R.3
-
9
-
-
34547114718
-
Regulation of DNA repair in hypoxic cancer cells
-
Bindra RS, Crosby ME, Glazer PM. 2007. Regulation of DNA repair in hypoxic cancer cells. Cancer Metastasis Rev 26:249-260. http://dx.doi .org/10.1007/s10555-007-9061-3
-
(2007)
Cancer Metastasis Rev
, vol.26
, pp. 249-260
-
-
Bindra, R.S.1
Crosby, M.E.2
Glazer, P.M.3
-
10
-
-
85084383569
-
Stressinduced mutagenesis: implications in cancer and drug resistance
-
16 September 2016
-
Fitzgerald DM, Hastings PJ, Rosenberg SM. 16 September 2016. Stressinduced mutagenesis: implications in cancer and drug resistance. Annu Rev Cancer Biol 1:6.1-6.22. http://dx.doi.org/10.1146/annurev-cancerbio-050216-121919
-
Annu Rev Cancer Biol
, vol.1
, pp. 6.1-6.22
-
-
Fitzgerald, D.M.1
Hastings, P.J.2
Rosenberg, S.M.3
-
11
-
-
84863451730
-
The evolution of stress-induced hypermutation in asexual populations
-
Ram Y, Hadany L. 2012. The evolution of stress-induced hypermutation in asexual populations. Evolution 66:2315-2328. http://dx.doi.org/10.1111/j.1558-5646.2012.01576.x
-
(2012)
Evolution
, vol.66
, pp. 2315-2328
-
-
Ram, Y.1
Hadany, L.2
-
12
-
-
85006284588
-
Stress-induced mutagenesis and complex adaptation
-
Ram Y, Hadany L. 2014. Stress-induced mutagenesis and complex adaptation. Proc Biol Sci 281:20141025. http://dx.doi.org/10.1098/rspb .2014.1025
-
(2014)
Proc Biol Sci
, vol.281
-
-
Ram, Y.1
Hadany, L.2
-
13
-
-
0037849904
-
Stress-induced mutagenesis in bacteria
-
Bjedov I, Tenaillon O, Gerard B, Souza V, Denamur E, Radman M, Taddei F, Matic I. 2003. Stress-induced mutagenesis in bacteria. Science 300:1404-1409. http://dx.doi.org/10.1126/science.1082240
-
(2003)
Science
, vol.300
, pp. 1404-1409
-
-
Bjedov, I.1
Tenaillon, O.2
Gerard, B.3
Souza, V.4
Denamur, E.5
Radman, M.6
Taddei, F.7
Matic, I.8
-
14
-
-
21344460325
-
Inhibition of mutation and combating the evolution of antibiotic resistance
-
Cirz RT, Chin JK, Andes DR, de Crecy-Lagard V, Craig WA, Romesberg FE. 2005. Inhibition of mutation and combating the evolution of antibiotic resistance. PLoS Biol 3:e176. http://dx.doi.org/10 .1371/journal.pbio.0030176
-
(2005)
PLoS Biol
, vol.3
-
-
Cirz, R.T.1
Chin, J.K.2
Andes, D.R.3
de Crecy-Lagard, V.4
Craig, W.A.5
Romesberg, F.E.6
-
15
-
-
35148883884
-
Controlling mutation: intervening in evolution as a therapeutic strategy
-
Cirz RT, Romesberg FE. 2007. Controlling mutation: intervening in evolution as a therapeutic strategy. Crit Rev Biochem Mol Biol 42:341-354. http://dx.doi.org/10.1080/10409230701597741
-
(2007)
Crit Rev Biochem Mol Biol
, vol.42
, pp. 341-354
-
-
Cirz, R.T.1
Romesberg, F.E.2
-
16
-
-
84875876463
-
Beta-lactam antibiotics promote bacterial mutagenesis via an RpoSmediated reduction in replication fidelity
-
Gutierrez A, Laureti L, Crussard S, Abida H, Rodriguez-Rojas A, Blazquez J, Baharoglu Z, Mazel D, Darfeuille F, Vogel J, Matic I. 2013. Beta-lactam antibiotics promote bacterial mutagenesis via an RpoSmediated reduction in replication fidelity. Nat Commun 4:1610. http://dx.doi.org/10.1038/ncomms2607
-
(2013)
Nat Commun
, vol.4
, pp. 1610
-
-
Gutierrez, A.1
Laureti, L.2
Crussard, S.3
Abida, H.4
Rodriguez-Rojas, A.5
Blazquez, J.6
Baharoglu, Z.7
Mazel, D.8
Darfeuille, F.9
Vogel, J.10
Matic, I.11
-
17
-
-
80052563657
-
Stress alters rates and types of loss of heterozygosity in Candida albicans
-
Forche A, Abbey D, Pisithkul T, Weinzierl MA, Ringstrom T, Bruck D, Petersen K, Berman J. 2011. Stress alters rates and types of loss of heterozygosity in Candida albicans. mBio 2:e00129-11. http://dx.doi.org/10.1128/mBio.00129-11
-
(2011)
mBio
, vol.2
-
-
Forche, A.1
Abbey, D.2
Pisithkul, T.3
Weinzierl, M.A.4
Ringstrom, T.5
Bruck, D.6
Petersen, K.7
Berman, J.8
-
18
-
-
24944477416
-
A switch from highfidelity to error-prone DNA double-strand break repair underlies stressinduced mutation
-
Ponder RG, Fonville NC, Rosenberg SM. 2005. A switch from highfidelity to error-prone DNA double-strand break repair underlies stressinduced mutation. Mol Cell 19:791-804. http://dx.doi.org/10.1016/j .molcel.2005.07.025
-
(2005)
Mol Cell
, vol.19
, pp. 791-804
-
-
Ponder, R.G.1
Fonville, N.C.2
Rosenberg, S.M.3
-
19
-
-
80051961878
-
Impact of a stress-inducible switch to mutagenic repair of DNA breaks on mutation in Escherichia coli
-
Shee C, Gibson JL, Darrow MC, Gonzalez C, Rosenberg SM. 2011. Impact of a stress-inducible switch to mutagenic repair of DNA breaks on mutation in Escherichia coli. Proc Natl Acad Sci U S A 108:13659-13664. http://dx.doi.org/10.1073/pnas.1104681108
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 13659-13664
-
-
Shee, C.1
Gibson, J.L.2
Darrow, M.C.3
Gonzalez, C.4
Rosenberg, S.M.5
-
20
-
-
84868159034
-
Two mechanisms produce mutation hotspots at DNA breaks in Escherichia coli
-
Shee C, Gibson JL, Rosenberg SM. 2012. Two mechanisms produce mutation hotspots at DNA breaks in Escherichia coli. Cell Rep 2:714-721. http://dx.doi.org/10.1016/j.celrep.2012.08.033
-
(2012)
Cell Rep
, vol.2
, pp. 714-721
-
-
Shee, C.1
Gibson, J.L.2
Rosenberg, S.M.3
-
21
-
-
0028292215
-
Recombination in adaptive mutation
-
Harris RS, Longerich S, Rosenberg SM. 1994. Recombination in adaptive mutation. Science 264:258-260. http://dx.doi.org/10.1126/science .8146657
-
(1994)
Science
, vol.264
, pp. 258-260
-
-
Harris, R.S.1
Longerich, S.2
Rosenberg, S.M.3
-
22
-
-
0030051842
-
Two enzymes, both of which process recombination intermediates, have opposite effects on adaptive mutation in Escherichia coli
-
Foster PL, Trimarchi JM, Maurer RA. 1996. Two enzymes, both of which process recombination intermediates, have opposite effects on adaptive mutation in Escherichia coli. Genetics 142:25-37
-
(1996)
Genetics
, vol.142
, pp. 25-37
-
-
Foster, P.L.1
Trimarchi, J.M.2
Maurer, R.A.3
-
23
-
-
0030000945
-
Opposing roles of the Holliday junction processing systems of Escherichia coli in recombinationdependent adaptive mutation
-
Harris RS, Ross KJ, Rosenberg SM. 1996. Opposing roles of the Holliday junction processing systems of Escherichia coli in recombinationdependent adaptive mutation. Genetics 142:681-691
-
(1996)
Genetics
, vol.142
, pp. 681-691
-
-
Harris, R.S.1
Ross, K.J.2
Rosenberg, S.M.3
-
24
-
-
0035265678
-
SOS mutator DNA polymerase IV functions in adaptive mutation and not adaptive amplification
-
McKenzie GJ, Lee PL, Lombardo MJ, Hastings PJ, Rosenberg SM. 2001. SOS mutator DNA polymerase IV functions in adaptive mutation and not adaptive amplification. Mol Cell 7:571-579. http://dx.doi.org/10 .1016/S1097-2765(01)00204-0
-
(2001)
Mol Cell
, vol.7
, pp. 571-579
-
-
McKenzie, G.J.1
Lee, P.L.2
Lombardo, M.J.3
Hastings, P.J.4
Rosenberg, S.M.5
-
25
-
-
70349142721
-
Stressinduced beta-lactam antibiotic resistance mutation and sequences of stationary-phase mutations in the Escherichia coli chromosome
-
Petrosino JF, Galhardo RS, Morales LD, Rosenberg SM. 2009. Stressinduced beta-lactam antibiotic resistance mutation and sequences of stationary-phase mutations in the Escherichia coli chromosome. J Bacteriol 191:5881-5889. http://dx.doi.org/10.1128/JB.00732-09
-
(2009)
J Bacteriol
, vol.191
, pp. 5881-5889
-
-
Petrosino, J.F.1
Galhardo, R.S.2
Morales, L.D.3
Rosenberg, S.M.4
-
26
-
-
77956528497
-
Separate DNA Pol II-and Pol IV-dependent pathways of stressinduced mutation during double-strand-break repair in Escherichia coli are controlled by RpoS
-
Frisch RL, Su Y, Thornton PC, Gibson JL, Rosenberg SM, Hastings PJ. 2010. Separate DNA Pol II-and Pol IV-dependent pathways of stressinduced mutation during double-strand-break repair in Escherichia coli are controlled by RpoS. J Bacteriol 192:4694-4700. http://dx.doi.org/10 .1128/JB.00570-10
-
(2010)
J Bacteriol
, vol.192
, pp. 4694-4700
-
-
Frisch, R.L.1
Su, Y.2
Thornton, P.C.3
Gibson, J.L.4
Rosenberg, S.M.5
Hastings, P.J.6
-
27
-
-
0142062024
-
Error-prone DNA polymerase IV is controlled by the stress-response sigma factor, RpoS, in Escherichia coli
-
Layton JC, Foster PL. 2003. Error-prone DNA polymerase IV is controlled by the stress-response sigma factor, RpoS, in Escherichia coli. Mol Microbiol 50:549-561. http://dx.doi.org/10.1046/j.1365-2958.2003.03704.x
-
(2003)
Mol Microbiol
, vol.50
, pp. 549-561
-
-
Layton, J.C.1
Foster, P.L.2
-
28
-
-
1642354817
-
General stress response regulator RpoS in adaptive mutation and amplification in Escherichia coli
-
Lombardo M-J, Aponyi I, Rosenberg SM. 2004. General stress response regulator RpoS in adaptive mutation and amplification in Escherichia coli. Genetics 166:669-680. http://dx.doi.org/10.1534/genetics.166.2 .669
-
(2004)
Genetics
, vol.166
, pp. 669-680
-
-
Lombardo, M.-J.1
Aponyi, I.2
Rosenberg, S.M.3
-
29
-
-
0026094779
-
Adaptive reversion of a frameshift mutation in Escherichia coli
-
Cairns J, Foster PL. 1991. Adaptive reversion of a frameshift mutation in Escherichia coli. Genetics 128:695-701
-
(1991)
Genetics
, vol.128
, pp. 695-701
-
-
Cairns, J.1
Foster, P.L.2
-
31
-
-
77954354375
-
The sigma(E) stress response is required for stress-induced mutation and amplification in Escherichia coli
-
Gibson JL, Lombardo MJ, Thornton PC, Hu KH, Galhardo RS, Beadle B, Habib A, Magner DB, Frost LS, Herman C, Hastings PJ, Rosenberg SM. 2010. The sigma(E) stress response is required for stress-induced mutation and amplification in Escherichia coli. Mol Microbiol 77:415-430. http://dx.doi.org/10.1111/j.1365-2958.2010.07213.x
-
(2010)
Mol Microbiol
, vol.77
, pp. 415-430
-
-
Gibson, J.L.1
Lombardo, M.J.2
Thornton, P.C.3
Hu, K.H.4
Galhardo, R.S.5
Beadle, B.6
Habib, A.7
Magner, D.B.8
Frost, L.S.9
Herman, C.10
Hastings, P.J.11
Rosenberg, S.M.12
-
32
-
-
84881342072
-
R-loops and nicks initiate DNA breakage and genome instability in non-growing Escherichia coli
-
Wimberly H, Shee C, Thornton PC, Sivaramakrishnan P, Rosenberg SM, Hastings PJ. 2013. R-loops and nicks initiate DNA breakage and genome instability in non-growing Escherichia coli. Nat Commun 4:2115. http://dx.doi.org/10.1038/ncomms3115
-
(2013)
Nat Commun
, vol.4
, pp. 2115
-
-
Wimberly, H.1
Shee, C.2
Thornton, P.C.3
Sivaramakrishnan, P.4
Rosenberg, S.M.5
Hastings, P.J.6
-
33
-
-
67849086820
-
DinB upregulation is the sole role of the SOS response in stress-induced mutagenesis in Escherichia coli
-
Galhardo RS, Do R, Yamada M, Friedberg EC, Hastings PJ, Nohmi T, Rosenberg SM. 2009. DinB upregulation is the sole role of the SOS response in stress-induced mutagenesis in Escherichia coli. Genetics 182: 55-68. http://dx.doi.org/10.1534/genetics.109.100735
-
(2009)
Genetics
, vol.182
, pp. 55-68
-
-
Galhardo, R.S.1
Do, R.2
Yamada, M.3
Friedberg, E.C.4
Hastings, P.J.5
Nohmi, T.6
Rosenberg, S.M.7
-
34
-
-
80053226878
-
The RpoS-mediated general stress response in Escherichia coli
-
Battesti A, Majdalani N, Gottesman S. 2011. The RpoS-mediated general stress response in Escherichia coli. Annu Rev Microbiol 65:189-213. http://dx.doi.org/10.1146/annurev-micro-090110-102946
-
(2011)
Annu Rev Microbiol
, vol.65
, pp. 189-213
-
-
Battesti, A.1
Majdalani, N.2
Gottesman, S.3
-
35
-
-
0036714331
-
Signal transduction and regulatory mechanisms involved in control of the sigma(S) (RpoS) subunit of RNA polymerase
-
Hengge-Aronis R. 2002. Signal transduction and regulatory mechanisms involved in control of the sigma(S) (RpoS) subunit of RNA polymerase. Microbiol Mol Biol Rev 66:373-395. http://dx.doi.org/10.1128/MMBR.66.3.373-395.2002
-
(2002)
Microbiol Mol Biol Rev
, vol.66
, pp. 373-395
-
-
Hengge-Aronis, R.1
-
36
-
-
0032749835
-
Double-strand-break repair recombination in Escherichia coli: physical evidence for a DNA replication mechanism in vivo
-
Motamedi MR, Szigety SK, Rosenberg SM. 1999. Double-strand-break repair recombination in Escherichia coli: physical evidence for a DNA replication mechanism in vivo. Genes Dev 13:2889-2903. http://dx.doi .org/10.1101/gad.13.21.2889
-
(1999)
Genes Dev
, vol.13
, pp. 2889-2903
-
-
Motamedi, M.R.1
Szigety, S.K.2
Rosenberg, S.M.3
-
37
-
-
84878932551
-
Preferential D-loop extension by a translesion DNA polymerase underlies error-prone recombination
-
Pomerantz RT, Kurth I, Goodman MF, O'Donnell ME. 2013. Preferential D-loop extension by a translesion DNA polymerase underlies error-prone recombination. Nat Struct Mol Biol 20:748-755. http://dx.doi .org/10.1038/nsmb.2573
-
(2013)
Nat Struct Mol Biol
, vol.20
, pp. 748-755
-
-
Pomerantz, R.T.1
Kurth, I.2
Goodman, M.F.3
O'Donnell, M.E.4
-
38
-
-
84925061865
-
Mutational signatures indicative of environmental stress in bacteria
-
Maharjan R, Ferenci T. 2015. Mutational signatures indicative of environmental stress in bacteria. Mol Biol Evol 32:380-391. http://dx.doi.org/10.1093/molbev/msu306
-
(2015)
Mol Biol Evol
, vol.32
, pp. 380-391
-
-
Maharjan, R.1
Ferenci, T.2
-
39
-
-
84870665519
-
Identity and function of a large gene network underlying mutagenic repair ofDNAbreaks
-
Al Mamun AA, Lombardo MJ, Shee C, Lisewski AM, Gonzalez C, Lin D, Nehring RB, Saint-Ruf C, Gibson JL, Frisch RL, Lichtarge O, Hastings PJ, Rosenberg SM. 2012. Identity and function of a large gene network underlying mutagenic repair ofDNAbreaks. Science 338:1344-1348. http://dx.doi.org/10.1126/science.1226683
-
(2012)
Science
, vol.338
, pp. 1344-1348
-
-
Al Mamun, A.A.1
Lombardo, M.J.2
Shee, C.3
Lisewski, A.M.4
Gonzalez, C.5
Lin, D.6
Nehring, R.B.7
Saint-Ruf, C.8
Gibson, J.L.9
Frisch, R.L.10
Lichtarge, O.11
Hastings, P.J.12
Rosenberg, S.M.13
-
40
-
-
0026067069
-
Identification and sequence determination of the host factor gene for bacteriophage Q beta
-
Kajitani M, Ishihama A. 1991. Identification and sequence determination of the host factor gene for bacteriophage Q beta. Nucleic Acids Res 19:1063-1066. http://dx.doi.org/10.1093/nar/19.5.1063
-
(1991)
Nucleic Acids Res
, vol.19
, pp. 1063-1066
-
-
Kajitani, M.1
Ishihama, A.2
-
41
-
-
34247109118
-
Hfq structure, function and ligand binding
-
Brennan RG, Link TM. 2007. Hfq structure, function and ligand binding. Curr Opin Microbiol 10:125-133. http://dx.doi.org/10.1016/j.mib .2007.03.015
-
(2007)
Curr Opin Microbiol
, vol.10
, pp. 125-133
-
-
Brennan, R.G.1
Link, T.M.2
-
42
-
-
75249100904
-
The role of Hfq in bacterial pathogens
-
Chao Y, Vogel J. 2010. The role of Hfq in bacterial pathogens. Curr Opin Microbiol 13:24-33. http://dx.doi.org/10.1016/j.mib.2010.01.001
-
(2010)
Curr Opin Microbiol
, vol.13
, pp. 24-33
-
-
Chao, Y.1
Vogel, J.2
-
43
-
-
33845713571
-
The RNA chaperone Hfq is essential for the virulence of Salmonella typhimurium
-
Sittka A, Pfeiffer V, Tedin K, Vogel J. 2007. The RNA chaperone Hfq is essential for the virulence of Salmonella typhimurium. Mol Microbiol 63:193-217. http://dx.doi.org/10.1111/j.1365-2958.2006.05489.x
-
(2007)
Mol Microbiol
, vol.63
, pp. 193-217
-
-
Sittka, A.1
Pfeiffer, V.2
Tedin, K.3
Vogel, J.4
-
44
-
-
79551534433
-
A role for the RNA chaperone Hfq in controlling adherent-invasive Escherichia coli colonization and virulence
-
Simonsen KT, Nielsen G, Bjerrum JV, Kruse T, Kallipolitis BH, Moller-Jensen J. 2011. A role for the RNA chaperone Hfq in controlling adherent-invasive Escherichia coli colonization and virulence. PLoS One 6:e16387. http://dx.doi.org/10.1371/journal.pone.0016387
-
(2011)
PLoS One
, vol.6
-
-
Simonsen, K.T.1
Nielsen, G.2
Bjerrum, J.V.3
Kruse, T.4
Kallipolitis, B.H.5
Moller-Jensen, J.6
-
45
-
-
2442645227
-
The RNA-binding protein Hfq of Listeria monocytogenes: role in stress tolerance and virulence
-
Christiansen JK, Larsen MH, Ingmer H, Sogaard-Andersen L, Kallipolitis BH. 2004. The RNA-binding protein Hfq of Listeria monocytogenes: role in stress tolerance and virulence. J Bacteriol 186:3355-3362. http://dx.doi.org/10.1128/JB.186.11.3355-3362.2004
-
(2004)
J Bacteriol
, vol.186
, pp. 3355-3362
-
-
Christiansen, J.K.1
Larsen, M.H.2
Ingmer, H.3
Sogaard-Andersen, L.4
Kallipolitis, B.H.5
-
46
-
-
67650550777
-
Involvement of the posttranscriptional regulator Hfq in Yersinia pestis virulence
-
Geng J, Song Y, Yang L, Feng Y, Qiu Y, Li G, Guo J, Bi Y, Qu Y, Wang W, Wang X, Guo Z, Yang R, Han Y. 2009. Involvement of the posttranscriptional regulator Hfq in Yersinia pestis virulence. PLoS One 4:e6213. http://dx.doi.org/10.1371/journal.pone.0006213
-
(2009)
PLoS One
, vol.4
-
-
Geng, J.1
Song, Y.2
Yang, L.3
Feng, Y.4
Qiu, Y.5
Li, G.6
Guo, J.7
Bi, Y.8
Qu, Y.9
Wang, W.10
Wang, X.11
Guo, Z.12
Yang, R.13
Han, Y.14
-
47
-
-
3142550776
-
Hfq is essential for Vibrio cholerae virulence and downregulates sigma expression
-
Ding Y, Davis BM, Waldor MK. 2004. Hfq is essential for Vibrio cholerae virulence and downregulates sigma expression. Mol Microbiol 53: 345-354. http://dx.doi.org/10.1111/j.1365-2958.2004.04142.x
-
(2004)
Mol Microbiol
, vol.53
, pp. 345-354
-
-
Ding, Y.1
Davis, B.M.2
Waldor, M.K.3
-
48
-
-
0141681868
-
Reduced virulence of a hfq mutant of Pseudomonas aeruginosa O1
-
Sonnleitner E, Hagens S, Rosenau F, Wilhelm S, Habel A, Jager KE, Blasi U. 2003. Reduced virulence of a hfq mutant of Pseudomonas aeruginosa O1. Microb Pathog 35:217-228. http://dx.doi.org/10.1016/S0882-4010(03)00149-9
-
(2003)
Microb Pathog
, vol.35
, pp. 217-228
-
-
Sonnleitner, E.1
Hagens, S.2
Rosenau, F.3
Wilhelm, S.4
Habel, A.5
Jager, K.E.6
Blasi, U.7
-
49
-
-
84898619077
-
The RNA chaperone Hfq is involved in stress tolerance and virulence in uropathogenic Proteus mirabilis
-
Wang MC, Chien HF, Tsai YL, Liu MC, Liaw SJ. 2014. The RNA chaperone Hfq is involved in stress tolerance and virulence in uropathogenic Proteus mirabilis. PLoS One 9:e85626. http://dx.doi.org/10.1371/journal.pone.0085626
-
(2014)
PLoS One
, vol.9
-
-
Wang, M.C.1
Chien, H.F.2
Tsai, Y.L.3
Liu, M.C.4
Liaw, S.J.5
-
50
-
-
1642565815
-
The bacterial Sm-like protein Hfq: a key player in RNA transactions
-
Valentin-Hansen P, Eriksen M, Udesen C. 2004. The bacterial Sm-like protein Hfq: a key player in RNA transactions. Mol Microbiol 51:1525-1533. http://dx.doi.org/10.1111/j.1365-2958.2003.03935.x
-
(2004)
Mol Microbiol
, vol.51
, pp. 1525-1533
-
-
Valentin-Hansen, P.1
Eriksen, M.2
Udesen, C.3
-
51
-
-
79960433506
-
Hfq and its constellation of RNA
-
Vogel J, Luisi BF. 2011. Hfq and its constellation of RNA. Nat Rev Microbiol 9:578-589. http://dx.doi.org/10.1038/nrmicro2615
-
(2011)
Nat Rev Microbiol
, vol.9
, pp. 578-589
-
-
Vogel, J.1
Luisi, B.F.2
-
52
-
-
84875457350
-
Bacterial small RNA-based negative regulation: Hfq and its accomplices
-
De Lay N, Schu DJ, Gottesman S. 2013. Bacterial small RNA-based negative regulation: Hfq and its accomplices. J Biol Chem 288:7996-8003. http://dx.doi.org/10.1074/jbc.R112.441386
-
(2013)
J Biol Chem
, vol.288
, pp. 7996-8003
-
-
De Lay, N.1
Schu, D.J.2
Gottesman, S.3
-
53
-
-
71549126189
-
Activation of gene expression by small RNA
-
Frohlich KS, Vogel J. 2009. Activation of gene expression by small RNA. Curr Opin Microbiol 12:674-682. http://dx.doi.org/10.1016/j .mib.2009.09.009
-
(2009)
Curr Opin Microbiol
, vol.12
, pp. 674-682
-
-
Frohlich, K.S.1
Vogel, J.2
-
54
-
-
78049365859
-
Mechanism of positive regulation by DsrA and RprA small noncoding RNAs: pairing increases translation and protects rpoS mRNA from degradation
-
McCullen CA, Benhammou JN, Majdalani N, Gottesman S. 2010. Mechanism of positive regulation by DsrA and RprA small noncoding RNAs: pairing increases translation and protects rpoS mRNA from degradation. J Bacteriol 192:5559-5571. http://dx.doi.org/10.1128/JB.00464-10
-
(2010)
J Bacteriol
, vol.192
, pp. 5559-5571
-
-
McCullen, C.A.1
Benhammou, J.N.2
Majdalani, N.3
Gottesman, S.4
-
55
-
-
0036271043
-
A bioinformatics based approach to discover small RNA genes in the Escherichia coli genome
-
Chen S, Lesnik EA, Hall TA, Sampath R, Griffey RH, Ecker DJ, Blyn LB. 2002. A bioinformatics based approach to discover small RNA genes in the Escherichia coli genome. Biosystems 65:157-177. http://dx.doi.org/10.1016/S0303-2647(02)00013-8
-
(2002)
Biosystems
, vol.65
, pp. 157-177
-
-
Chen, S.1
Lesnik, E.A.2
Hall, T.A.3
Sampath, R.4
Griffey, R.H.5
Ecker, D.J.6
Blyn, L.B.7
-
56
-
-
0035395606
-
Identification of novel small RNAs using comparative genomics and microarrays
-
Wassarman KM, Repoila F, Rosenow C, Storz G, Gottesman S. 2001. Identification of novel small RNAs using comparative genomics and microarrays. Genes Dev 15:1637-1651. http://dx.doi.org/10.1101/gad.901001
-
(2001)
Genes Dev
, vol.15
, pp. 1637-1651
-
-
Wassarman, K.M.1
Repoila, F.2
Rosenow, C.3
Storz, G.4
Gottesman, S.5
-
57
-
-
0344237410
-
RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria
-
Vogel J, Bartels V, Tang TH, Churakov G, Slagter-Jager JG, Huttenhofer A, Wagner EG. 2003. RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria. Nucleic Acids Res 31:6435-6443. http://dx.doi.org/10.1093/nar/gkg867
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 6435-6443
-
-
Vogel, J.1
Bartels, V.2
Tang, T.H.3
Churakov, G.4
Slagter-Jager, J.G.5
Huttenhofer, A.6
Wagner, E.G.7
-
58
-
-
0035954304
-
Novel small RNA-encoding genes in the intergenic regions of Escherichia coli
-
Argaman L, Hershberg R, Vogel J, Bejerano G, Wagner EG, Margalit H, Altuvia S. 2001. Novel small RNA-encoding genes in the intergenic regions of Escherichia coli. Curr Biol 11:941-950. http://dx.doi.org/10 .1016/S0960-9822(01)00270-6
-
(2001)
Curr Biol
, vol.11
, pp. 941-950
-
-
Argaman, L.1
Hershberg, R.2
Vogel, J.3
Bejerano, G.4
Wagner, E.G.5
Margalit, H.6
Altuvia, S.7
-
59
-
-
0141644746
-
Global analysis of small RNA and mRNA targets of Hfq
-
Zhang A, Wassarman KM, Rosenow C, Tjaden BC, Storz G, Gottesman S. 2003. Global analysis of small RNA and mRNA targets of Hfq. Mol Microbiol 50:1111-1124. http://dx.doi.org/10.1046/j.1365-2958 .2003.03734.x
-
(2003)
Mol Microbiol
, vol.50
, pp. 1111-1124
-
-
Zhang, A.1
Wassarman, K.M.2
Rosenow, C.3
Tjaden, B.C.4
Storz, G.5
Gottesman, S.6
-
60
-
-
0033854238
-
The gcvB gene encodes a small untranslated RNA involved in expression of the dipeptide and oligopeptide transport systems in Escherichia coli
-
Urbanowski ML, Stauffer LT, Stauffer GV. 2000. The gcvB gene encodes a small untranslated RNA involved in expression of the dipeptide and oligopeptide transport systems in Escherichia coli. Mol Microbiol 37:856-868. http://dx.doi.org/10.1046/j.1365-2958.2000.02051.x
-
(2000)
Mol Microbiol
, vol.37
, pp. 856-868
-
-
Urbanowski, M.L.1
Stauffer, L.T.2
Stauffer, G.V.3
-
61
-
-
61449128339
-
Role of the Escherichia coli Hfq protein in GcvB regulation of oppA and dppA mRNAs
-
Pulvermacher SC, Stauffer LT, Stauffer GV. 2009. Role of the Escherichia coli Hfq protein in GcvB regulation of oppA and dppA mRNAs. Microbiology 155:115-123. http://dx.doi.org/10.1099/mic.0.023432-0
-
(2009)
Microbiology
, vol.155
, pp. 115-123
-
-
Pulvermacher, S.C.1
Stauffer, L.T.2
Stauffer, G.V.3
-
62
-
-
58149495971
-
The small RNA GcvB regulates sstT mRNA expression in Escherichia coli
-
Pulvermacher SC, Stauffer LT, Stauffer GV. 2009. The small RNA GcvB regulates sstT mRNA expression in Escherichia coli. J Bacteriol 191:238-248. http://dx.doi.org/10.1128/JB.00915-08
-
(2009)
J Bacteriol
, vol.191
, pp. 238-248
-
-
Pulvermacher, S.C.1
Stauffer, L.T.2
Stauffer, G.V.3
-
63
-
-
61449251662
-
Role of the sRNA GcvB in regulation of cycA in Escherichia coli
-
Pulvermacher SC, Stauffer LT, Stauffer GV. 2009. Role of the sRNA GcvB in regulation of cycA in Escherichia coli. Microbiology 155:106-114. http://dx.doi.org/10.1099/mic.0.023598-0
-
(2009)
Microbiology
, vol.155
, pp. 106-114
-
-
Pulvermacher, S.C.1
Stauffer, L.T.2
Stauffer, G.V.3
-
64
-
-
80051929071
-
Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA
-
Sharma CM, Papenfort K, Pernitzsch SR, Mollenkopf HJ, Hinton JC, Vogel J. 2011. Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA. Mol Microbiol 81:1144-1165. http://dx.doi.org/10.1111/j.1365-2958.2011 .07751.x
-
(2011)
Mol Microbiol
, vol.81
, pp. 1144-1165
-
-
Sharma, C.M.1
Papenfort, K.2
Pernitzsch, S.R.3
Mollenkopf, H.J.4
Hinton, J.C.5
Vogel, J.6
-
65
-
-
65649087919
-
Small noncoding RNA GcvB is a novel regulator of acid resistance in Escherichia coli
-
Jin Y, Watt RM, Danchin A, Huang JD. 2009. Small noncoding RNA GcvB is a novel regulator of acid resistance in Escherichia coli. BMC Genomics 10:165. http://dx.doi.org/10.1186/1471-2164-10-165
-
(2009)
BMC Genomics
, vol.10
, pp. 165
-
-
Jin, Y.1
Watt, R.M.2
Danchin, A.3
Huang, J.D.4
-
66
-
-
33751202938
-
Small non-coding RNAs and the bacterial outer membrane
-
Vogel J, Papenfort K. 2006. Small non-coding RNAs and the bacterial outer membrane. Curr Opin Microbiol 9:605-611. http://dx.doi.org/10 .1016/j.mib.2006.10.006
-
(2006)
Curr Opin Microbiol
, vol.9
, pp. 605-611
-
-
Vogel, J.1
Papenfort, K.2
-
67
-
-
33748257975
-
Modulating the outer membrane with small RNAs
-
Guillier M, Gottesman S, Storz G. 2006. Modulating the outer membrane with small RNAs. Genes Dev 20:2338-2348. http://dx.doi.org/10 .1101/gad.1457506
-
(2006)
Genes Dev
, vol.20
, pp. 2338-2348
-
-
Guillier, M.1
Gottesman, S.2
Storz, G.3
-
68
-
-
84863924309
-
Bacterial small RNA regulators: versatile roles and rapidly evolving variations
-
Gottesman S, Storz G. 2011. Bacterial small RNA regulators: versatile roles and rapidly evolving variations. Cold Spring Harb Perspect Biol 3:a003798. http://dx.doi.org/10.1101/cshperspect.a003798
-
(2011)
Cold Spring Harb Perspect Biol
, vol.3
-
-
Gottesman, S.1
Storz, G.2
-
69
-
-
0036713509
-
Transcriptome analysis of Escherichia coli using high-density oligonucleotide probe arrays
-
Tjaden B, Saxena RM, Stolyar S, Haynor DR, Kolker E, Rosenow C. 2002. Transcriptome analysis of Escherichia coli using high-density oligonucleotide probe arrays. Nucleic Acids Res 30:3732-3738. http://dx .doi.org/10.1093/nar/gkf505
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 3732-3738
-
-
Tjaden, B.1
Saxena, R.M.2
Stolyar, S.3
Haynor, D.R.4
Kolker, E.5
Rosenow, C.6
-
70
-
-
33751383274
-
SigmaE-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay
-
Papenfort K, Pfeiffer V, Mika F, Lucchini S, Hinton JC, Vogel J. 2006. SigmaE-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay. Mol Microbiol 62:1674-1688. http://dx.doi.org/10.1111/j.1365-2958.2006.05524.x
-
(2006)
Mol Microbiol
, vol.62
, pp. 1674-1688
-
-
Papenfort, K.1
Pfeiffer, V.2
Mika, F.3
Lucchini, S.4
Hinton, J.C.5
Vogel, J.6
-
71
-
-
34249807616
-
SigmaE regulates and is regulated by a small RNA in Escherichia coli
-
Thompson KM, Rhodius VA, Gottesman S. 2007. SigmaE regulates and is regulated by a small RNA in Escherichia coli. J Bacteriol 189:4243-4256. http://dx.doi.org/10.1128/JB.00020-07
-
(2007)
J Bacteriol
, vol.189
, pp. 4243-4256
-
-
Thompson, K.M.1
Rhodius, V.A.2
Gottesman, S.3
-
72
-
-
33750297745
-
Conserved small non-coding RNAs that belong to the sigmaE regulon: role in down-regulation of outer membrane proteins
-
Johansen J, Rasmussen AA, Overgaard M, Valentin-Hansen P. 2006. Conserved small non-coding RNAs that belong to the sigmaE regulon: role in down-regulation of outer membrane proteins. J Mol Biol 364: 1-8. http://dx.doi.org/10.1016/j.jmb.2006.09.004
-
(2006)
J Mol Biol
, vol.364
, pp. 1-8
-
-
Johansen, J.1
Rasmussen, A.A.2
Overgaard, M.3
Valentin-Hansen, P.4
-
73
-
-
28244471582
-
Regulation of ompA mRNA stability: the role of a small regulatory RNA in growth phase-dependent control
-
Rasmussen AA, Eriksen M, Gilany K, Udesen C, Franch T, Petersen C, Valentin-Hansen P. 2005. Regulation of ompA mRNA stability: the role of a small regulatory RNA in growth phase-dependent control. Mol Microbiol 58:1421-1429. http://dx.doi.org/10.1111/j.1365-2958.2005.04911.x
-
(2005)
Mol Microbiol
, vol.58
, pp. 1421-1429
-
-
Rasmussen, A.A.1
Eriksen, M.2
Gilany, K.3
Udesen, C.4
Franch, T.5
Petersen, C.6
Valentin-Hansen, P.7
-
74
-
-
25844458478
-
Hfq-dependent regulation of OmpA synthesis is mediated by an antisense RNA
-
Udekwu KI, Darfeuille F, Vogel J, Reimegard J, Holmqvist E, Wagner EG. 2005. Hfq-dependent regulation of OmpA synthesis is mediated by an antisense RNA. Genes Dev 19:2355-2366. http://dx.doi.org/10.1101/gad.354405
-
(2005)
Genes Dev
, vol.19
, pp. 2355-2366
-
-
Udekwu, K.I.1
Darfeuille, F.2
Vogel, J.3
Reimegard, J.4
Holmqvist, E.5
Wagner, E.G.6
-
75
-
-
77951191945
-
MicA sRNA links the PhoP regulon to cell envelope stress
-
Coornaert A, Lu A, Mandin P, Springer M, Gottesman S, Guillier M. 2010. MicA sRNA links the PhoP regulon to cell envelope stress. Mol Microbiol 76:467-479. http://dx.doi.org/10.1111/j.1365-2958 .2010.07115.x
-
(2010)
Mol Microbiol
, vol.76
, pp. 467-479
-
-
Coornaert, A.1
Lu, A.2
Mandin, P.3
Springer, M.4
Gottesman, S.5
Guillier, M.6
-
76
-
-
79961239912
-
Small RNAs endow a transcriptional activator with essential repressor functions for single-tier control of a global stress regulon
-
Gogol EB, Rhodius VA, Papenfort K, Vogel J, Gross CA. 2011. Small RNAs endow a transcriptional activator with essential repressor functions for single-tier control of a global stress regulon. Proc Natl Acad Sci U S A 108:12875-12880. http://dx.doi.org/10.1073/pnas.1109379108
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 12875-12880
-
-
Gogol, E.B.1
Rhodius, V.A.2
Papenfort, K.3
Vogel, J.4
Gross, C.A.5
-
77
-
-
84904362234
-
MicL, a new sigmaE-dependent sRNA, combats envelope stress by repressing synthesis of Lpp, the major outer membrane lipoprotein
-
Guo MS, Updegrove TB, Gogol EB, Shabalina SA, Gross CA, Storz G. 2014. MicL, a new sigmaE-dependent sRNA, combats envelope stress by repressing synthesis of Lpp, the major outer membrane lipoprotein. Genes Dev 28:1620-1634. http://dx.doi.org/10.1101/gad.243485.114
-
(2014)
Genes Dev
, vol.28
, pp. 1620-1634
-
-
Guo, M.S.1
Updegrove, T.B.2
Gogol, E.B.3
Shabalina, S.A.4
Gross, C.A.5
Storz, G.6
-
78
-
-
33947361601
-
Hfq modulates the sigmaE-mediated envelope stress response and the sigma32-mediated cytoplasmic stress response in Escherichia coli
-
Guisbert E, Rhodius VA, Ahuja N, Witkin E, Gross CA. 2007. Hfq modulates the sigmaE-mediated envelope stress response and the sigma32-mediated cytoplasmic stress response in Escherichia coli. J Bacteriol 189:1963-1973. http://dx.doi.org/10.1128/JB.01243-06
-
(2007)
J Bacteriol
, vol.189
, pp. 1963-1973
-
-
Guisbert, E.1
Rhodius, V.A.2
Ahuja, N.3
Witkin, E.4
Gross, C.A.5
-
79
-
-
0034612342
-
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
-
Datsenko KA, Wanner BL. 2000. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci U S A 97:6640-6645. http://dx.doi.org/10.1073/pnas.120163297
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, pp. 6640-6645
-
-
Datsenko, K.A.1
Wanner, B.L.2
-
81
-
-
0030924613
-
Genome-wide hypermutation in a subpopulation of stationary-phase cells underlies recombination-dependent adaptive mutation
-
Torkelson J, Harris RS, Lombardo MJ, Nagendran J, Thulin C, Rosenberg SM. 1997. Genome-wide hypermutation in a subpopulation of stationary-phase cells underlies recombination-dependent adaptive mutation. EMBO J 16:3303-3311. http://dx.doi.org/10.1093/emboj/16.11 .3303
-
(1997)
EMBO J
, vol.16
, pp. 3303-3311
-
-
Torkelson, J.1
Harris, R.S.2
Lombardo, M.J.3
Nagendran, J.4
Thulin, C.5
Rosenberg, S.M.6
-
82
-
-
34249789279
-
Spontaneous DNA breakage in single living Escherichia coli cells
-
Pennington JM, Rosenberg SM. 2007. Spontaneous DNA breakage in single living Escherichia coli cells. Nat Genet 39:797-802. http://dx.doi .org/10.1038/ng2051
-
(2007)
Nat Genet
, vol.39
, pp. 797-802
-
-
Pennington, J.M.1
Rosenberg, S.M.2
-
83
-
-
84963865409
-
An ultra-dense library resource for rapid deconvolution of mutations that cause phenotypes in Escherichia coli
-
Nehring RB, Gu F, Lin HY, Gibson JL, Blythe MJ, Wilson R, Bravo Nunez MA, Hastings PJ, Louis EJ, Frisch RL, Hu JC, Rosenberg SM. 2016. An ultra-dense library resource for rapid deconvolution of mutations that cause phenotypes in Escherichia coli. Nucleic Acids Res 44:e41. http://dx.doi.org/10.1093/nar/gkv1131
-
(2016)
Nucleic Acids Res
, vol.44
-
-
Nehring, R.B.1
Gu, F.2
Lin, H.Y.3
Gibson, J.L.4
Blythe, M.J.5
Wilson, R.6
Bravo Nunez, M.A.7
Hastings, P.J.8
Louis, E.J.9
Frisch, R.L.10
Hu, J.C.11
Rosenberg, S.M.12
-
84
-
-
0027382860
-
In vitro functional characterization of overproduced Escherichia coli katF/rpoS gene product
-
Nguyen LH, Jensen DB, Thompson NE, Gentry DR, Burgess RR. 1993. In vitro functional characterization of overproduced Escherichia coli katF/rpoS gene product. Biochemistry 32:11112-11117. http://dx.doi .org/10.1021/bi00092a021
-
(1993)
Biochemistry
, vol.32
, pp. 11112-11117
-
-
Nguyen, L.H.1
Jensen, D.B.2
Thompson, N.E.3
Gentry, D.R.4
Burgess, R.R.5
-
85
-
-
0033568606
-
The Escherichia coli sigma(E)-dependent extracytoplasmic stress response is controlled by the regulated proteolysis of an anti-sigma factor
-
Ades SE, Connolly LE, Alba BM, Gross CA. 1999. The Escherichia coli sigma(E)-dependent extracytoplasmic stress response is controlled by the regulated proteolysis of an anti-sigma factor. Genes Dev 13:2449-2461. http://dx.doi.org/10.1101/gad.13.18.2449
-
(1999)
Genes Dev
, vol.13
, pp. 2449-2461
-
-
Ades, S.E.1
Connolly, L.E.2
Alba, B.M.3
Gross, C.A.4
-
86
-
-
0031746001
-
Recombinationdependent mutation in Escherichia coli occurs in stationary phase
-
McKenzie GJ, Lombardo MJ, Rosenberg SM. 1998. Recombinationdependent mutation in Escherichia coli occurs in stationary phase. Genetics 149:1163-1165
-
(1998)
Genetics
, vol.149
, pp. 1163-1165
-
-
McKenzie, G.J.1
Lombardo, M.J.2
Rosenberg, S.M.3
-
87
-
-
0035404535
-
Evolving responsively: adaptive mutation
-
Rosenberg SM. 2001. Evolving responsively: adaptive mutation. Nat Rev Genet 2:504-515. http://dx.doi.org/10.1038/35080556
-
(2001)
Nat Rev Genet
, vol.2
, pp. 504-515
-
-
Rosenberg, S.M.1
-
88
-
-
0028907529
-
rpoE, the gene encoding the second heat-shock sigma factor, sigma E, in Escherichia coli
-
Rouviere PE, De Las Penas A, Mecsas J, Lu CZ, Rudd KE, Gross CA. 1995. rpoE, the gene encoding the second heat-shock sigma factor, sigma E, in Escherichia coli. EMBO J 14:1032-1042
-
(1995)
EMBO J
, vol.14
, pp. 1032-1042
-
-
Rouviere, P.E.1
De Las Penas, A.2
Mecsas, J.3
Lu, C.Z.4
Rudd, K.E.5
Gross, C.A.6
-
89
-
-
0030611694
-
SigmaE is an essential sigma factor in Escherichia coli
-
De Las Penas A, Connolly L, Gross CA. 1997. SigmaE is an essential sigma factor in Escherichia coli. J Bacteriol 179:6862-6864
-
(1997)
J Bacteriol
, vol.179
, pp. 6862-6864
-
-
De Las Penas, A.1
Connolly, L.2
Gross, C.A.3
-
90
-
-
2442563573
-
Regulation of the Escherichia coli sigmadependent envelope stress response
-
Alba BM, Gross CA. 2004. Regulation of the Escherichia coli sigmadependent envelope stress response. Mol Microbiol 52:613-619. http://dx.doi.org/10.1111/j.1365-2958.2003.03982.x
-
(2004)
Mol Microbiol
, vol.52
, pp. 613-619
-
-
Alba, B.M.1
Gross, C.A.2
-
91
-
-
0021325098
-
Isolation of catalase-deficient Escherichia coli mutants and genetic mapping of katE, a locus that affects catalase activity
-
Loewen PC. 1984. Isolation of catalase-deficient Escherichia coli mutants and genetic mapping of katE, a locus that affects catalase activity. J Bacteriol 157:622-626
-
(1984)
J Bacteriol
, vol.157
, pp. 622-626
-
-
Loewen, P.C.1
-
92
-
-
0027787823
-
The activity of sigma E, an Escherichia coli heat-inducible sigma-factor, is modulated by expression of outer membrane proteins
-
Mecsas J, Rouviere PE, Erickson JW, Donohue TJ, Gross CA. 1993. The activity of sigma E, an Escherichia coli heat-inducible sigma-factor, is modulated by expression of outer membrane proteins. Genes Dev 7:2618-2628. http://dx.doi.org/10.1101/gad.7.12b.2618
-
(1993)
Genes Dev
, vol.7
, pp. 2618-2628
-
-
Mecsas, J.1
Rouviere, P.E.2
Erickson, J.W.3
Donohue, T.J.4
Gross, C.A.5
-
93
-
-
0028799986
-
Analysis of cell size and DNA content in exponentially growing and stationary-phase batch cultures of Escherichia coli
-
Akerlund T, Nordstrom K, Bernander R. 1995. Analysis of cell size and DNA content in exponentially growing and stationary-phase batch cultures of Escherichia coli. J Bacteriol 177:6791-6797
-
(1995)
J Bacteriol
, vol.177
, pp. 6791-6797
-
-
Akerlund, T.1
Nordstrom, K.2
Bernander, R.3
-
94
-
-
0016604616
-
SOS repair hypothesis: phenomenology of an inducible DNA repair which is accompanied by mutagenesis
-
Hanawalt P, Setlow RB (ed), Plenum Press, New York, NY
-
Radman M. 1975. SOS repair hypothesis: phenomenology of an inducible DNA repair which is accompanied by mutagenesis, p 355-367. In Hanawalt P, Setlow RB (ed), Molecular mechanisms for repair of DNA. Plenum Press, New York, NY
-
(1975)
Molecular mechanisms for repair of DNA
, pp. 355-367
-
-
Radman, M.1
-
95
-
-
0017037398
-
Ultraviolet mutagenesis and inducible DNA repair in Escherichia coli
-
Witkin EM. 1976. Ultraviolet mutagenesis and inducible DNA repair in Escherichia coli. Bacteriol Rev 40:869-907
-
(1976)
Bacteriol Rev
, vol.40
, pp. 869-907
-
-
Witkin, E.M.1
-
96
-
-
10044241658
-
RpoS-regulated genes of Escherichia coli identified by random lacZ fusion mutagenesis
-
Vijayakumar SR, Kirchhof MG, Patten CL, Schellhorn HE. 2004. RpoS-regulated genes of Escherichia coli identified by random lacZ fusion mutagenesis. J Bacteriol 186:8499-8507. http://dx.doi.org/10.1128/JB .186.24.8499-8507.2004
-
(2004)
J Bacteriol
, vol.186
, pp. 8499-8507
-
-
Vijayakumar, S.R.1
Kirchhof, M.G.2
Patten, C.L.3
Schellhorn, H.E.4
-
97
-
-
84903976214
-
IraL is an RssB anti-adaptor that stabilizes RpoS during logarithmic phase growth in Escherichia coli and Shigella
-
Hryckowian AJ, Battesti A, Lemke JJ, Meyer ZC, Welch RA. 2014. IraL is an RssB anti-adaptor that stabilizes RpoS during logarithmic phase growth in Escherichia coli and Shigella. mBio 5:e01043-14. http://dx.doi .org/10.1128/mBio.01043-14
-
(2014)
mBio
, vol.5
-
-
Hryckowian, A.J.1
Battesti, A.2
Lemke, J.J.3
Meyer, Z.C.4
Welch, R.A.5
-
99
-
-
0023665959
-
Competition between sigma factors for core RNA polymerase
-
Malik S, Zalenskaya K, Goldfarb A. 1987. Competition between sigma factors for core RNA polymerase. Nucleic Acids Res 15:8521-8530. http://dx.doi.org/10.1093/nar/15.20.8521
-
(1987)
Nucleic Acids Res
, vol.15
, pp. 8521-8530
-
-
Malik, S.1
Zalenskaya, K.2
Goldfarb, A.3
-
100
-
-
0032799133
-
Sigma competition: the contest between bacteriophage T4 middle and late transcription
-
Kolesky S, Ouhammouch M, Brody EN, Geiduschek EP. 1999. Sigma competition: the contest between bacteriophage T4 middle and late transcription. J Mol Biol 291:267-281. http://dx.doi.org/10.1006/jmbi.1999 .2953
-
(1999)
J Mol Biol
, vol.291
, pp. 267-281
-
-
Kolesky, S.1
Ouhammouch, M.2
Brody, E.N.3
Geiduschek, E.P.4
-
101
-
-
0034666279
-
Competition among seven Escherichia coli sigma subunits: relative binding affinities to the coreRNA polymerase
-
Maeda H, Fujita N, Ishihama A. 2000. Competition among seven Escherichia coli sigma subunits: relative binding affinities to the coreRNA polymerase. Nucleic Acids Res 28:3497-3503. http://dx.doi.org/10.1093/nar/28.18.3497
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 3497-3503
-
-
Maeda, H.1
Fujita, N.2
Ishihama, A.3
-
102
-
-
84992459016
-
Global mapping of small RNA-target interactions in bacteria
-
Melamed S, Peer A, Faigenbaum-Romm R, Gatt YE, Reiss N, Bar A, Altuvia Y, Argaman L, Margalit H. 2016. Global mapping of small RNA-target interactions in bacteria. Mol Cell 63:884-897. http://dx.doi .org/10.1016/j.molcel.2016.07.026
-
(2016)
Mol Cell
, vol.63
, pp. 884-897
-
-
Melamed, S.1
Peer, A.2
Faigenbaum-Romm, R.3
Gatt, Y.E.4
Reiss, N.5
Bar, A.6
Altuvia, Y.7
Argaman, L.8
Margalit, H.9
-
103
-
-
60149089144
-
Regulatory RNAs in bacteria
-
Waters LS, Storz G. 2009. Regulatory RNAs in bacteria. Cell 136:615-628. http://dx.doi.org/10.1016/j.cell.2009.01.043
-
(2009)
Cell
, vol.136
, pp. 615-628
-
-
Waters, L.S.1
Storz, G.2
-
104
-
-
34247173351
-
Identification of small RNAs in diverse bacterial species
-
Livny J, Waldor MK. 2007. Identification of small RNAs in diverse bacterial species. Curr Opin Microbiol 10:96-101. http://dx.doi.org/10 .1016/j.mib.2007.03.005
-
(2007)
Curr Opin Microbiol
, vol.10
, pp. 96-101
-
-
Livny, J.1
Waldor, M.K.2
-
105
-
-
0030877039
-
Role of rpoS regulon in resistance to oxidative stress and near-UV radiation in delta oxyR suppressor mutants of Escherichia coli
-
Ivanova AB, Glinsky GV, Eisenstark A. 1997. Role of rpoS regulon in resistance to oxidative stress and near-UV radiation in delta oxyR suppressor mutants of Escherichia coli. Free Radic Biol Med 23:627-636. http://dx.doi.org/10.1016/S0891-5849(97)00013-0
-
(1997)
Free Radic Biol Med
, vol.23
, pp. 627-636
-
-
Ivanova, A.B.1
Glinsky, G.V.2
Eisenstark, A.3
-
106
-
-
0344453810
-
Regulation of the alternative sigma factor E during initiation, adaptation, and shutoff of the extracytoplasmic heat shock response in Escherichia coli
-
Ades SE, Grigorova IL, Gross CA. 2003. Regulation of the alternative sigma factor E during initiation, adaptation, and shutoff of the extracytoplasmic heat shock response in Escherichia coli. J Bacteriol 185:2512-2519. http://dx.doi.org/10.1128/JB.185.8.2512-2519.2003
-
(2003)
J Bacteriol
, vol.185
, pp. 2512-2519
-
-
Ades, S.E.1
Grigorova, I.L.2
Gross, C.A.3
-
107
-
-
0025853061
-
Inhibition of cell division in hupA hupB mutant bacteria lackingHUprotein
-
Dri AM, Rouviere-Yaniv J, Moreau PL. 1991. Inhibition of cell division in hupA hupB mutant bacteria lackingHUprotein. J Bacteriol 173:2852-2863
-
(1991)
J Bacteriol
, vol.173
, pp. 2852-2863
-
-
Dri, A.M.1
Rouviere-Yaniv, J.2
Moreau, P.L.3
-
108
-
-
0024583633
-
New recA mutations that dissociate the various RecA protein activities in Escherichia coli provide evidence for an additional role for RecA protein in UV mutagenesis
-
Dutreix M, Moreau PL, Bailone A, Galibert F, Battista JR, Walker GC, Devoret R. 1989. New recA mutations that dissociate the various RecA protein activities in Escherichia coli provide evidence for an additional role for RecA protein in UV mutagenesis. J Bacteriol 171:2415-2423
-
(1989)
J Bacteriol
, vol.171
, pp. 2415-2423
-
-
Dutreix, M.1
Moreau, P.L.2
Bailone, A.3
Galibert, F.4
Battista, J.R.5
Walker, G.C.6
Devoret, R.7
-
109
-
-
31544450286
-
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection
-
Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H. 2006. Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol Syst Biol 2:2006-0008. http://dx.doi.org/10.1038/msb4100050
-
(2006)
Mol Syst Biol
, vol.2
, pp. 2006-0008
-
-
Baba, T.1
Ara, T.2
Hasegawa, M.3
Takai, Y.4
Okumura, Y.5
Baba, M.6
Datsenko, K.A.7
Tomita, M.8
Wanner, B.L.9
Mori, H.10
-
110
-
-
0029065955
-
Gene disruption in Escherichia coli: TcR and KmR cassettes with the option of Flp-catalyzed excision of the antibiotic-resistance determinant
-
Cherepanov PP, Wackernagel W. 1995. Gene disruption in Escherichia coli: TcR and KmR cassettes with the option of Flp-catalyzed excision of the antibiotic-resistance determinant. Gene 158:9-14. http://dx.doi.org/10.1016/0378-1119(95)00193-A
-
(1995)
Gene
, vol.158
, pp. 9-14
-
-
Cherepanov, P.P.1
Wackernagel, W.2
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