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Volumn 33, Issue 9, 2016, Pages 2273-2284

Small Traditional Human Communities Sustain Genomic Diversity over Microgeographic Scales despite Linguistic Isolation

Author keywords

gene flow; genetic diversity; linguistic diversity; population structure.

Indexed keywords

GENE FLOW; GENETIC DRIFT; GENETIC MODEL; GENETIC VARIABILITY; GENOME; HUMAN; HUMAN EXPERIMENT; INDONESIA; INFORMATION PROCESSING; LANGUAGE; NEOLITHIC; POPULATION STRUCTURE; ETHNIC GROUP; EVOLUTION; GENETIC ASSOCIATION STUDY; GENETIC VARIATION; GENETICS; GENOMICS; GEOGRAPHY; LINGUISTICS; OCEANIC ANCESTRY GROUP; POPULATION DYNAMICS; POPULATION GENETICS; SINGLE NUCLEOTIDE POLYMORPHISM; SOUTHEAST ASIA;

EID: 84995400174     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msw099     Document Type: Article
Times cited : (11)

References (61)
  • 1
    • 84975742565 scopus 로고    scopus 로고
    • A map of human genome variation from population-scale sequencing
    • Genomes Project Consortium
    • 1000 Genomes Project Consortium 2010. A map of human genome variation from population-scale sequencing. Nature 467:1061-1073.
    • (2010) Nature , vol.467 , pp. 1061-1073
  • 2
    • 84975795680 scopus 로고    scopus 로고
    • An integrated map of genetic variation from 1, 092 human genomes
    • 1000 Genomes Project Consortium
    • 1000 Genomes Project Consortium 2012. An integrated map of genetic variation from 1, 092 human genomes. Nature 491:56-65.
    • (2012) Nature , vol.491 , pp. 56-65
  • 3
    • 84943171338 scopus 로고    scopus 로고
    • A global reference for human genetic variation
    • 1000 Genomes Project Consortium
    • 1000 Genomes Project Consortium 2015. A global reference for human genetic variation. Nature 526:68-74.
    • (2015) Nature , vol.526 , pp. 68-74
  • 4
    • 69749099417 scopus 로고    scopus 로고
    • Fast model-based estimation of ancestry in unrelated individuals
    • Alexander DH, Novembre J, Lange K. 2009. Fast model-based estimation of ancestry in unrelated individuals. Genome Res. 19:1655-1664.
    • (2009) Genome Res. , vol.19 , pp. 1655-1664
    • Alexander, D.H.1    Novembre, J.2    Lange, K.3
  • 5
    • 84967197944 scopus 로고    scopus 로고
    • Badan Pusat Statistik [cited 2016 May 20] Available from
    • Badan Pusat Statistik. 2010. Sensus Penduduk 2010. [cited 2016 May 20]. Available from: http://sp2010. bps. go.
    • (2010) Sensus Penduduk 2010
  • 8
    • 84878589007 scopus 로고    scopus 로고
    • Improving the accuracy and efficiency of identity-by-descent detection in population data
    • Browning BL, Browning SR. 2013. Improving the accuracy and efficiency of identity-by-descent detection in population data. Genetics 194:459-471.
    • (2013) Genetics , vol.194 , pp. 459-471
    • Browning, B.L.1    Browning, S.R.2
  • 9
  • 10
    • 61449135985 scopus 로고    scopus 로고
    • Fast and flexible simulation of DNA sequence data
    • Chen GK, MarjoramP, Wall JD. 2009. Fast and flexible simulation of DNA sequence data. Genome Res. 19:136-142.
    • (2009) Genome Res. , vol.19 , pp. 136-142
    • Chen, G.K.1    Marjoramp Wall, J.D.2
  • 11
    • 77952735305 scopus 로고    scopus 로고
    • Autosomal and X-linked single nucleotide polymorphisms reveal a steep Asian-Melanesian ancestry cline in eastern Indonesia and a sex bias in admixture rates
    • Cox MP, Karafet TM, Lansing JS, Sudoyo H, Hammer MF. 2010. Autosomal and X-linked single nucleotide polymorphisms reveal a steep Asian-Melanesian ancestry cline in eastern Indonesia and a sex bias in admixture rates. Proc R Soc B 277:1589-1596.
    • (2010) Proc R Soc B , vol.277 , pp. 1589-1596
    • Cox, M.P.1    Karafet, T.M.2    Lansing, J.S.3    Sudoyo, H.4    Hammer, M.F.5
  • 12
    • 58149337100 scopus 로고    scopus 로고
    • Intergenic DNA sequences from the human X chromosome reveal high rates of global gene flow
    • Cox MP, Woerner AE, Wall JD, Hammer MF. 2008. Intergenic DNA sequences from the human X chromosome reveal high rates of global gene flow. BMC Genet. 9:e76.
    • (2008) BMC Genet , vol.9 , pp. 76
    • Cox, M.P.1    Woerner, A.E.2    Wall, J.D.3    Hammer, M.F.4
  • 13
    • 84861153207 scopus 로고    scopus 로고
    • Abc: An R package for approximate Bayesian computation (ABC)
    • Csilléry K, François O, Blum MGB. 2012. abc: an R package for approximate Bayesian computation (ABC). Methods Ecol Evol. 3:475-479.
    • (2012) Methods Ecol Evol. , vol.3 , pp. 475-479
    • Csilléry, K.1    François, O.2    Blum, M.G.B.3
  • 14
    • 84902504030 scopus 로고    scopus 로고
    • Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel
    • 1000 Genomes Project Consortium Genomes Project Consortium
    • Delaneau O, Marchini J, 1000 Genomes Project Consortium, Genomes Project Consortium. 2014. Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel. Nat Commun. 5:3934.
    • (2014) Nat Commun. , vol.5 , pp. 3934
    • Delaneau, O.1    Marchini, J.2
  • 15
    • 37649024043 scopus 로고    scopus 로고
    • The ade4 package: Implementing the duality diagram for ecologists
    • Dray S, Dufour AB. 2007. The ade4 package: implementing the duality diagram for ecologists. J Stat Softw. 22:1-20.
    • (2007) J Stat Softw. , vol.22 , pp. 1-20
    • Dray, S.1    Dufour, A.B.2
  • 16
    • 67649963928 scopus 로고    scopus 로고
    • Mathematical population genetics
    • New York: Springer
    • Ewens WJ. 2004. Mathematical population genetics. I. Theoretical introduction. New York: Springer.
    • (2004) Theoretical Introduction , vol.1
    • Ewens, W.J.1
  • 17
    • 77953032930 scopus 로고    scopus 로고
    • Arlequin suite ver 3. 5: A new series of programs to perform population genetics analyses under Linux and Windows
    • Excoffier L, Lischer HEL. 2010. Arlequin suite ver 3. 5: A new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Res. 10:564-567.
    • (2010) Mol Ecol Res. , vol.10 , pp. 564-567
    • Excoffier, L.1    Lischer, H.E.L.2
  • 18
    • 84890092576 scopus 로고
    • The Hague: Martinus Nijhoff
    • Forth GL. 1981. Rindi. The Hague: Martinus Nijhoff.
    • (1981) Rindi
    • Forth, G.L.1
  • 22
    • 84954182627 scopus 로고    scopus 로고
    • Relaxed observance of traditional marriage rules allows social connectivity without loss of genetic diversity
    • Guillot EG, Hazelton ML, Karafet TM, Lansing JS, Sudoyo H, Cox MP. 2015. Relaxed observance of traditional marriage rules allows social connectivity without loss of genetic diversity. Mol Biol Evol. 32:2254-2262.
    • (2015) Mol Biol Evol. , vol.32 , pp. 2254-2262
    • Guillot, E.G.1    Hazelton, M.L.2    Karafet, T.M.3    Lansing, J.S.4    Sudoyo, H.5    Cox, M.P.6
  • 23
    • 85026459766 scopus 로고    scopus 로고
    • Climate change influenced female population sizes through time across the Indonesian archipelago
    • Guillot EG, Tumonggor MK, Lansing JS, Sudoyo H, Cox MP. 2013. Climate change influenced female population sizes through time across the Indonesian archipelago. Hum Biol. 85:135-152.
    • (2013) Hum Biol. , vol.85 , pp. 135-152
    • Guillot, E.G.1    Tumonggor, M.K.2    Lansing, J.S.3    Sudoyo, H.4    Cox, M.P.5
  • 27
    • 80053176070 scopus 로고    scopus 로고
    • Detecting autozygosity through runs of homozygosity: A comparison of three autozygosity detection algorithms
    • Howrigan D, Simonson M, Keller M. 2011. Detecting autozygosity through runs of homozygosity: a comparison of three autozygosity detection algorithms. BMC Genomics 12:460.
    • (2011) BMC Genomics , vol.12 , pp. 460
    • Howrigan, D.1    Simonson, M.2    Keller, M.3
  • 28
    • 0026709389 scopus 로고
    • Estimation of levels of gene flow from DNA sequence data
    • Hudson RR, Slatkin M, Maddison WP. 1992. Estimation of levels of gene flow from DNA sequence data. Genetics 132:583-589.
    • (1992) Genetics , vol.132 , pp. 583-589
    • Hudson, R.R.1    Slatkin, M.2    Maddison, W.P.3
  • 29
    • 84923197414 scopus 로고    scopus 로고
    • Reassessment of global gene-language coevolution
    • Hunley K. 2015. Reassessment of global gene-language coevolution. Proc Natl Acad Sci USA. 112:1919-1920.
    • (2015) Proc Natl Acad Sci USA. , vol.112 , pp. 1919-1920
    • Hunley, K.1
  • 31
    • 34547861256 scopus 로고    scopus 로고
    • CLUMPP: A cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure
    • Jakobsson M, Rosenberg NA. 2007. CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics 23:1801-1806.
    • (2007) Bioinformatics , vol.23 , pp. 1801-1806
    • Jakobsson, M.1    Rosenberg, N.A.2
  • 41
    • 32944481700 scopus 로고    scopus 로고
    • Perspectives on human genetic variation from the HapMap Project
    • McVean G, Spencer CC, Chaix R. 2005. Perspectives on human genetic variation from the HapMap Project. PLoS Genet. 1:e54.
    • (2005) PLoS Genet , vol.1 , pp. 54
    • McVean, G.1    Spencer, C.C.2    Chaix, R.3
  • 44
    • 0005814023 scopus 로고
    • Mathematical model for studying genetic variation in terms of restriction endonucleases
    • Nei M, Li WH. 1979. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Sci USA. 76:5269-5273.
    • (1979) Proc Natl Acad Sci USA. , vol.76 , pp. 5269-5273
    • Nei, M.1    Li, W.H.2
  • 45
    • 84929415828 scopus 로고    scopus 로고
    • The diverse origins of the human gene pool
    • Paabo S. 2015. The diverse origins of the human gene pool. Nat Rev Genet. 16:313-314.
    • (2015) Nat Rev Genet. , vol.16 , pp. 313-314
    • Paabo, S.1
  • 46
  • 48
    • 33746585377 scopus 로고    scopus 로고
    • Possible ancestral structure in human populations
    • Plagnol V, Wall JD. 2006. Possible ancestral structure in human populations. PLoS Genet. 2:e105.
    • (2006) PLoS Genet. , vol.2 , pp. e105
    • Plagnol, V.1    Wall, J.D.2
  • 50
    • 0030888985 scopus 로고    scopus 로고
    • Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance
    • Rousset F. 1997. Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics 145:1219-1228.
    • (1997) Genetics , vol.145 , pp. 1219-1228
    • Rousset, F.1
  • 51
    • 36849080837 scopus 로고    scopus 로고
    • Genepop'007: A complete re-implementation of the genepop software for Windows and Linux
    • Rousset F. 2008. genepop'007: a complete re-implementation of the genepop software for Windows and Linux. Mol Ecol Resour. 8:103-106.
    • (2008) Mol Ecol Resour. , vol.8 , pp. 103-106
    • Rousset, F.1
  • 52
    • 84931477808 scopus 로고    scopus 로고
    • Reconstructing past admixture processes from local genomic ancestry using wavelet transformation
    • Sanderson J, Sudoyo H, Karafet TM, Hammer MF, Cox MP. 2015. Reconstructing past admixture processes from local genomic ancestry using wavelet transformation. Genetics 200:469-481.
    • (2015) Genetics , vol.200 , pp. 469-481
    • Sanderson, J.1    Sudoyo, H.2    Karafet, T.M.3    Hammer, M.F.4    Cox, M.P.5
  • 54
    • 0023159436 scopus 로고
    • Gene flow and the geographic structure of natural populations
    • Slatkin M. 1987. Gene flow and the geographic structure of natural populations. Science 236:787-792.
    • (1987) Science , vol.236 , pp. 787-792
    • Slatkin, M.1
  • 61
    • 84858690407 scopus 로고    scopus 로고
    • Genetic dating indicates that the Asian-Papuan admixture through Eastern Indonesia corresponds to the Austronesian expansion
    • The Hugo Pan-Asian SNP Consortium
    • Xu S, Pugach I, Stoneking M, Kayser M, Jin L, The Hugo Pan-Asian SNP Consortium. 2012. Genetic dating indicates that the Asian-Papuan admixture through Eastern Indonesia corresponds to the Austronesian expansion. Proc Natl Acad Sci USA. 109:4574-4579.
    • (2012) Proc Natl Acad Sci USA. , vol.109 , pp. 4574-4579
    • Xu, S.1    Pugach, I.2    Stoneking, M.3    Kayser, M.4    Jin, L.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.