-
1
-
-
84861127863
-
Fast and accurate inference of local ancestry in latino populations
-
Baran, Y., B. Pasaniuc, S. Sankararaman, D. G. Torgerson, C. Gignoux et al., 2012 Fast and accurate inference of local ancestry in Latino populations. Bioinformatics 28: 1359–1367.
-
(2012)
Bioinformatics
, vol.28
, pp. 1359-1367
-
-
Baran, Y.1
Pasaniuc, B.2
Sankararaman, S.3
Torgerson, D.G.4
Gignoux, C.5
-
2
-
-
0036964474
-
Approximate bayesian computation in population genetics
-
Beaumont, M. A., W. Zhang, and D. J. Balding, 2002 Approximate Bayesian Computation in population genetics. Genetics 162: 2025–2035.
-
(2002)
Genetics
, vol.162
, pp. 2025-2035
-
-
Beaumont, M.A.1
Zhang, W.2
Balding, D.J.3
-
3
-
-
0003739098
-
Prehistory of the indo-malaysian archipelago
-
Canberra, Australia
-
Bellwood, P., 2007 Prehistory of the Indo-Malaysian Archipelago. ANU E Press, Canberra, Australia.
-
(2007)
ANU E Press
-
-
Bellwood, P.1
-
4
-
-
84872074517
-
Pcadmix: Principal components-based assignment of ancestry along each chromosome in individuals with admixed ancestry from two or more populations
-
Brisbin, A., K. Bryc, J. Byrnes, F. Zakharia, L. Omberg et al., 2012 PCAdmix: principal components-based assignment of ancestry along each chromosome in individuals with admixed ancestry from two or more populations. Hum. Biol. 84: 343–364.
-
(2012)
Hum. Biol
, vol.84
, pp. 343-364
-
-
Brisbin, A.1
Bryc, K.2
Byrnes, J.3
Zakharia, F.4
Omberg, L.5
-
5
-
-
84901301075
-
Enhanced methods for local ancestry assignment in sequenced admixed individuals. Plos comput
-
Brown, R., and B. Pasaniuc, 2014 Enhanced methods for local ancestry assignment in sequenced admixed individuals. PLOS Comput. Biol. 10: e1003555.
-
(2014)
Biol
, pp. 10
-
-
Brown, R.1
Pasaniuc, B.2
-
6
-
-
76249102674
-
Genome-wide patterns of population structure and admixture in west africans and african americans
-
Bryc, K., A. Auton, M. R. Nelson, J. R. Oksenberg, S. L. Hauser et al., 2010 Genome-wide patterns of population structure and admixture in West Africans and African Americans. Proc. Natl. Acad. Sci. USA 107: 786–791.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 786-791
-
-
Bryc, K.1
Auton, A.2
Nelson, M.R.3
Oksenberg, J.R.4
Hauser, S.L.5
-
8
-
-
61449135985
-
Fast and flexible simulation of dna sequence data
-
Chen, G. K., P. Marjoram, and J. D. Wall, 2009 Fast and flexible simulation of DNA sequence data. Genome Res. 19: 136–142.
-
(2009)
Genome Res
, vol.19
, pp. 136-142
-
-
Chen, G.K.1
Marjoram, P.2
Wall, J.D.3
-
9
-
-
58149337100
-
Intergenic dna sequences from the human x chromosome reveal high rates of global gene flow
-
Cox, M. P., A. E. Woerner, J. D. Wall, and M. F. Hammer, 2008 Intergenic DNA sequences from the human X chromosome reveal high rates of global gene flow. BMC Genet. 9: 76.
-
(2008)
BMC Genet
, vol.9
, pp. 76
-
-
Cox, M.P.1
Woerner, A.E.2
Wall, J.D.3
Hammer, M.F.4
-
10
-
-
77954816556
-
Approximate bayesian computation (abc) in practice. Trends ecol
-
Csilléry, K., M. G. B. Blum, O. E. Gaggiotti, and O. François, 2010 Approximate Bayesian Computation (ABC) in practice. Trends Ecol. Evol. 25: 410–418.
-
(2010)
Evol
, vol.25
, pp. 410-418
-
-
Csilléry, K.1
Blum, M.G.B.2
Gaggiotti, O.E.3
François, O.4
-
11
-
-
84861153207
-
An r package for approximate bayesian computation (abc). methods ecol
-
Csilléry, K., O. François, and M. G. B. Blum, 2012 abc: an R package for approximate Bayesian computation (ABC). Methods Ecol. Evol. 3: 475–479.
-
Evol
, vol.3
, pp. 475-479
-
-
Csilléry, K.1
François, O.2
-
12
-
-
0041817568
-
Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies
-
Falush, D., M. Stephens, and J. K. Pritchard, 2003 Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164: 1567–1587.
-
(2003)
Genetics
, vol.164
, pp. 1567-1587
-
-
Falush, D.1
Stephens, M.2
Pritchard, J.K.3
-
13
-
-
26044441323
-
Cross-cultural estimation of the human generation interval for use in genetics-based population divergence studies
-
Fenner, J. N., 2005 Cross-cultural estimation of the human generation interval for use in genetics-based population divergence studies. Am. J. Phys. Anthropol. 128: 415–423.
-
(2005)
Am. J. Phys. Anthropol
, vol.128
, pp. 415-423
-
-
Fenner, J.N.1
-
14
-
-
84862587557
-
Population genetics models of local ancestry
-
Gravel, S., 2012 Population genetics models of local ancestry. Genetics 191: 607–619.
-
(2012)
Genetics
, vol.191
, pp. 607-619
-
-
Gravel, S.1
-
15
-
-
84893945338
-
A genetic atlas of human admixture history
-
Hellenthal, G., G. B. J. Busby, G. Band, J. F. Wilson, C. Capelli et al., 2014 A genetic atlas of human admixture history. Science 343: 747–751.
-
(2014)
Science
, vol.343
, pp. 747-751
-
-
Hellenthal, G.1
Busby, G.B.J.2
Band, G.3
Wilson, J.F.4
Capelli, C.5
-
16
-
-
77957919360
-
Discriminant analysis of principal components: A new method for the analysis of genetically structured populations
-
Jombart, T., S. Devillard, and F. Balloux, 2010 Discriminant analysis of principal components: a new method for the analysis of genetically structured populations. BMC Genet. 11: 94.
-
(2010)
BMC Genet
, vol.11
, pp. 94
-
-
Jombart, T.1
Devillard, S.2
Balloux, F.3
-
17
-
-
0037246661
-
Wavelets in bioinformatics and computational biology: State of art and perspectives
-
Liò, P., 2003 Wavelets in bioinformatics and computational biology: state of art and perspectives. Bioinformatics 19: 2–9.
-
(2003)
Bioinformatics
, vol.19
, pp. 2-9
-
-
Liò, P.1
-
18
-
-
84876362318
-
Inferring admixture histories of human populations using linkage disequilibrium
-
Loh, P.-R., M. Lipson, N. Patterson, P. Moorjani, J. K. Pickrell et al., 2013 Inferring admixture histories of human populations using linkage disequilibrium. Genetics 193: 1233–1254.
-
(2013)
Genetics
, vol.193
, pp. 1233-1254
-
-
Loh, P.-R.1
Lipson, M.2
Patterson, N.3
Moorjani, P.4
Pickrell, J.K.5
-
19
-
-
77958601770
-
Theoretical formulation of principal components analysis to detect and correct for population stratification
-
Ma, J., and C. I. Amos, 2010 Theoretical formulation of principal components analysis to detect and correct for population stratification. PLoS ONE 5: e12510.
-
(2010)
Plos ONE
, pp. 5
-
-
Ma, J.1
Amos, C.I.2
-
20
-
-
84863628084
-
Principal components analysis of population admixture
-
Ma, J., and C. I. Amos, 2012 Principal components analysis of population admixture. PLoS ONE 7: e40115.
-
(2012)
Plos ONE
, pp. 7
-
-
Ma, J.1
Amos, C.I.2
-
21
-
-
84881665614
-
Rfmix: A discriminative modeling approach for rapid and robust local-ancestry inference
-
Maples, B. K., S. Gravel, E. E. Kenny, and C. D. Bustamante, 2013 RFMix: a discriminative modeling approach for rapid and robust local-ancestry inference. Am. J. Hum. Genet. 93: 278–288.
-
(2013)
Am. J. Hum. Genet
, vol.93
, pp. 278-288
-
-
Maples, B.K.1
Gravel, S.2
Kenny, E.E.3
Bustamante, C.D.4
-
22
-
-
73349108482
-
A genealogical interpretation of principal components analysis
-
McVean, G., 2009 A genealogical interpretation of principal components analysis. PLoS Genet. 5: e1000686.
-
(2009)
Plos Genet
, pp. 5
-
-
McVean, G.1
-
23
-
-
79955576507
-
The history of african gene flow into southern europeans, levantines, and jews
-
Moorjani, P., N. Patterson, J. N. Hirschhorn, A. Keinan, L. Hao et al., 2011 The history of African gene flow into southern Europeans, Levantines, and Jews. PLoS Genet. 7: e1001373.
-
(2011)
Plos Genet
, pp. 7
-
-
Moorjani, P.1
Patterson, N.2
Hirschhorn, J.N.3
Keinan, A.4
Hao, L.5
-
24
-
-
42649093791
-
Interpreting principal component analyses of spatial population genetic variation
-
Novembre, J., and M. Stephens, 2008 Interpreting principal component analyses of spatial population genetic variation. Nat. Genet. 40: 646–649.
-
(2008)
Nat. Genet
, vol.40
, pp. 646-649
-
-
Novembre, J.1
Stephens, M.2
-
26
-
-
0000477306
-
On estimation of the wavelet variance
-
Percival, D. P., 1995 On estimation of the wavelet variance. Biometrika 82: 619–631.
-
(1995)
Biometrika
, vol.82
, pp. 619-631
-
-
Percival, D.P.1
-
27
-
-
62449182499
-
Inference of historical changes in migration rate from the lengths of migrant tracts
-
Pool, J. E., and R. Nielsen, 2009 Inference of historical changes in migration rate from the lengths of migrant tracts. Genetics 181: 711–719.
-
(2009)
Genetics
, vol.181
, pp. 711-719
-
-
Pool, J.E.1
Nielsen, R.2
-
28
-
-
67651225410
-
Sensitive detection of chromosomal segments of distinct ancestry in admixed populations
-
Price, A. L., A. Tandon, N. Patterson, K. C. Barnes, N. Rafaels et al., 2009 Sensitive detection of chromosomal segments of distinct ancestry in admixed populations. PLoS Genet. 5: e1000519.
-
(2009)
Plos Genet
, pp. 5
-
-
Price, A.L.1
Tandon, A.2
Patterson, N.3
Barnes, K.C.4
Rafaels, N.5
-
29
-
-
79951950847
-
Dating the age of admixture via wavelet transform analysis of genome-wide data
-
Pugach, I., R. Matveyev, A. Wollstein, M. Kayser, and M. Stoneking, 2011 Dating the age of admixture via wavelet transform analysis of genome-wide data. Genome Biol. 12: R19.
-
(2011)
Genome Biol
, vol.12
, pp. 19
-
-
Pugach, I.1
Matveyev, R.2
Wollstein, A.3
Kayser, M.4
Stoneking, M.5
-
30
-
-
84873072271
-
-
Purcell, S., 2009 PLINK, http://pngu.mgh.harvard.edu/purcell/plink/.
-
(2009)
PLINK
-
-
Purcell, S.1
-
31
-
-
34548292504
-
Plink: A tool set for whole-genome association and population-based linkage analyses
-
Purcell, S., B. Neale, K. Todd-Brown, L. Thomas, M. A. R. Ferreira et al., 2007 PLINK: a tool set for whole-genome association and population-based linkage analyses. Am. J. Hum. Genet. 81: 559–575.
-
(2007)
Am. J. Hum. Genet
, vol.81
, pp. 559-575
-
-
Purcell, S.1
Neale, B.2
Todd-Brown, K.3
Thomas, L.4
Ferreira, M.A.R.5
-
32
-
-
5344244656
-
-
Hearn, G. N. Stone, and M. J
-
R Development Core Team, 2014 R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria. Robinson, J. D., L. Bunnefeld, J. Hearn, G. N. Stone, and M. J.
-
(2014)
A language and environment for statistical computing
-
-
Development Core Team, R.1
-
33
-
-
84908102237
-
Abc inference of multi-population divergence with admixture from unphased population genomic data
-
Hickerson, 2014 ABC inference of multi-population divergence with admixture from unphased population genomic data. Mol. Ecol. 23: 4458–4471.
-
(2014)
Mol. Ecol
, vol.23
, pp. 4458-4471
-
-
-
34
-
-
41649121004
-
On the inference of ancestries in admixed populations
-
Sankararaman, S., G. Kimmel, E. Halperin, and M. I. Jordan, 2008 On the inference of ancestries in admixed populations. Genome Res. 18: 668–675.
-
(2008)
Genome Res
, vol.18
, pp. 668-675
-
-
Sankararaman, S.1
Kimmel, G.2
Halperin, E.3
Jordan, M.I.4
-
35
-
-
67650327255
-
Approximate bayesian computation without summary statistics: The case of admixture
-
Sousa, V. C., M. Fritz, M. A. Beaumont, and L. Chikhi, 2009 Approximate Bayesian Computation without summary statistics: the case of admixture. Genetics 181: 1507–1519.
-
(2009)
Genetics
, vol.181
, pp. 1507-1519
-
-
Sousa, V.C.1
Fritz, M.2
Beaumont, M.A.3
Chikhi, L.4
-
36
-
-
84873503481
-
Approximate bayesian computation. Plos comput
-
Sunnåker, M., A. G. Busetto, E. Numminen, J. Corander, M. Foll et al., 2013 Approximate Bayesian computation. PLOS Comput. Biol. 9: e1002803.
-
(2013)
Biol
, pp. 9
-
-
Sunnåker, M.1
Busetto, A.G.2
Numminen, E.3
Corander, J.4
Foll, M.5
-
38
-
-
84858690407
-
Genetic dating indicates that the asian-papuan admixture through eastern indonesia corresponds to the austronesian expansion
-
Xu, S., I. Pugach, M. Stoneking, M. Kayser, L. Jin et al., 2012 Genetic dating indicates that the Asian-Papuan admixture through Eastern Indonesia corresponds to the Austronesian expansion. Proc. Natl. Acad. Sci. USA 109: 4574–4579.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 4574-4579
-
-
Xu, S.1
Pugach, I.2
Stoneking, M.3
Kayser, M.4
Jin, L.5
|