Genetic dating indicates that the Asian-Papuan admixture through Eastern Indonesia corresponds to the Austronesian expansion

Proceedings of the National Academy of Sciences of the United States of America

Volumn 109, Issue 12, 2012, Pages 4574-4579

  Xu, Shuhua ^a   Pugach, Irina ^b   Stoneking, Mark ^b   Kayser, Manfred ^c   Jin, Li ^a,d  

^a INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

^b MAX PLANCK INSTITUTE FOR EVOLUTIONARY ANTHROPOLOGY   (Germany)

^c ERASMUS MEDICAL CENTER   (Netherlands)

^d FUDAN UNIVERSITY   (China)

Author keywords

Admixture time; Expansion time; Migration rate; Single nucleotide polymorphism

Indexed keywords

ARTICLE; ASIAN; CORRELATION ANALYSIS; ETHNICITY; GENE REPLICATION; GENETIC ANALYSIS; GENETIC ASSOCIATION; GENETIC LINKAGE; GENETIC RECOMBINATION; GENOME ANALYSIS; HUMAN; INDONESIA; LANGUAGE; LINGUISTICS; MAJOR CLINICAL STUDY; PAPUA NEW GUINEA; POPULATION GENETICS; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM; SOUTHEAST ASIA;

ASIA; ASIAN CONTINENTAL ANCESTRY GROUP; BAYES THEOREM; CHROMOSOME MAPPING; GENETICS, POPULATION; GENOME-WIDE ASSOCIATION STUDY; GENOTYPE; GEOGRAPHY; HUMANS; INDONESIA; LANGUAGE; LINGUISTICS; MODELS, GENETIC; MODELS, STATISTICAL; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; POLYMORPHISM, SINGLE NUCLEOTIDE;

EID: 84858690407     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1118892109     Document Type: Article

References (36)

1. Bellwood PS, Fox JJ, Tryon DT (1995) The Austronesians: Historical and Comparative Perspectives (ANU E Press, Canberra, Australia).
2. Hill C, et al. (2007) A mitochondrial stratigraphy for island southeast Asia. Am J Hum Genet 80:29-43. (Pubitemid 46047648)
3. Soares P, et al. (2008) Climate change and postglacial human dispersals in southeast Asia. Mol Biol Evol 25:1209-1218.
4. Donohue M, Denham T (2010) Farming and language in Island Southeast Asia: Reframing Austronesian history. Curr Anthropol 51:223-256.
5. Karafet TM, et al. (2010) Major east-west division underlies Y chromosome stratification across Indonesia. Mol Biol Evol 27:1833-1844.
6. Mona S, et al. (2009) Genetic admixture history of Eastern Indonesia as revealed by Y-chromosome and mitochondrial DNA analysis. Mol Biol Evol 26:1865-1877.
7. Cox MP, Karafet TM, Lansing JS, Sudoyo H, Hammer MF (2010) Autosomal and X-linked single nucleotide polymorphisms reveal a steep Asian-Melanesian ancestry cline in eastern Indonesia and a sex bias in admixture rates. Proc Biol Sci 277:1589-1596.
8. Bellwood P (2005) The First Farmers: The Origins of Agricultural Societies (Blackwell, Oxford).
9. Gray RD, Drummond AJ, Greenhill SJ (2009) Language phylogenies reveal expansion pulses and pauses in Pacific settlement. Science 323:479-483.
10. The HUGO Pan-Asian SNP Consortium (2009) Mapping human genetic diversity in Asia. Science 326:1541-1545.
11. Reich D, et al. (2011) Denisova admixture and the first modern human dispersals into Southeast Asia and Oceania. Am J Hum Genet 89:516-528.
12. Pugach I, Matveyev R, Wollstein A, Kayser M, Stoneking M (2011) Dating the age of admixture via wavelet transform analysis of genome-wide data. Genome Biol 12:R19.
13. Xu S, Jin L (2008) A genome-wide analysis of admixture in Uyghurs and a high-density admixture map for disease-gene discovery. Am J Hum Genet 83:322-336.
14. Xu S, Huang W, Qian J, Jin L (2008) Analysis of genomic admixture in Uyghur and its implication in mapping strategy. Am J Hum Genet 82:883-894.
15. Falush D, Stephens M, Pritchard JK (2003) Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies. Genetics 164:1567-1587. (Pubitemid 37102217)
16. Price AL, et al. (2009) Sensitive detection of chromosomal segments of distinct ancestry in admixed populations. PLoS Genet 5:e1000519.
17. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155:945-959. (Pubitemid 30397141)
18. Tang H, Peng J, Wang P, Risch NJ (2005) Estimation of individual admixture: Analytical and study design considerations. Genet Epidemiol 28:289-301. (Pubitemid 40559542)
19. Jordan FM, Gray RD, Greenhill SJ, Mace R (2009) Matrilocal residence is ancestral in Austronesian societies. Proc Biol Sci 276:1957-1964.
20. Hage P, Marck J (2003) Matrilineality and the Melanesian origin of Polynesian Y chromosomes. Curr Anthropol 44:S121-S127.
21. Lewis MP (2009) Ethnologue: Languages of the World, 16th ed. Available at http://www.ethnologue.com/. Accessed May 5, 2011.
22. Bellwood P, et al. (1998) 35,000 Years of Prehistory in the Northern Moluccas (Balkema, Rotterdam).
23. Blust R (1993) Central and Central-Eastern Malayo-Polynesian. Oceanic Linguistics 32:241-293.
24. Wollstein A, et al. (2010) Demographic history of Oceania inferred from genome-wide data. Curr Biol 20:1983-1992.
25. Denham T, Donohue M (2009) Pre-Austronesian dispersal of banana cultivars West from New Guinea: Linguistic relics from Eastern Indonesia. Archaeol Oceania 44:18-28.
26. Ross M (2005) Pronouns as a preliminary diagnostic for grouping Papuan languages. Papuan Pasts: Cultural, Linguistic, and Biological Histories of Papuan-Speaking Peoples, eds Pawley A, Attenborough R, Golson J, Hide R (Pacific Linguistics, Canberra, Australia), pp 15-65.
27. Soares P, et al. (2008) Climate change and postglacial human dispersals in southeast Asia. Mol Biol Evol 25:1209-1218.
28. Friedlaender JS, et al. (2008) The genetic structure of Pacific Islanders. PLoS Genet 4:e19.
29. Stoneking M, Krause J (2011) Learning about human population history from ancient and modern genomes. Nat Rev Genet 12:603-614.
30. Li JZ, et al. (2008) Worldwide human relationships inferred from genome-wide patterns of variation. Science 319:1100-1104. (Pubitemid 351300793)
31. Patterson N, Price AL, Reich D (2006) Population structure and eigenanalysis. PLoS Genet 2:e190.
32. Weir BS, Hill WG (2002) Estimating F-statistics. Annu Rev Genet 36:721-750. (Pubitemid 36109203)
33. Xu S, Gupta S, Jin L (2010) PEAS V1.0: A package for elementary analysis of SNP data. Mol Ecol Resour 10:1085-1088.
34. Ramachandran S, et al. (2005) Support from the relationship of genetic and geographic distance in human populations for a serial founder effect originating in Africa. Proc Natl Acad Sci USA 102:15942-15947. (Pubitemid 41552847)
35. Saitou N, Nei M (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425.
36. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596-1599. (Pubitemid 47236692)