-
1
-
-
84969749326
-
Scaling laws predict global microbial diversity
-
Locey, K.J. & Lennon, J.T. Scaling laws predict global microbial diversity. Proc. Natl. Acad. Sci. USA 113, 5970-5975 (2016).
-
(2016)
Proc. Natl. Acad. Sci. USA
, vol.113
, pp. 5970-5975
-
-
Locey, K.J.1
Lennon, J.T.2
-
3
-
-
84861968400
-
Omics of the mammalian gut-new insights into function
-
Lamendella, R., VerBerkmoes, N. & Jansson, J.K. Omics of the mammalian gut-new insights into function. Curr. Opin. Biotechnol. 23, 491-500 (2012).
-
(2012)
Curr. Opin. Biotechnol
, vol.23
, pp. 491-500
-
-
Lamendella, R.1
VerBerkmoes, N.2
Jansson, J.K.3
-
4
-
-
84906829581
-
The Earth Microbiome project: Successes and aspirations
-
Gilbert, J.A., Jansson, J.K. & Knight, R. The Earth Microbiome project: successes and aspirations. BMC Biol. 12, 69 (2014).
-
(2014)
BMC Biol
, vol.12
, pp. 69
-
-
Gilbert, J.A.1
Jansson, J.K.2
Knight, R.3
-
5
-
-
84945537929
-
Microbiome. A unified initiative to harness Earths microbiomes
-
Alivisatos, A.P. et al. Microbiome. A unified initiative to harness Earths microbiomes. Science 350, 507-508 (2015).
-
(2015)
Science
, vol.350
, pp. 507-508
-
-
Alivisatos, A.P.1
-
6
-
-
84866146940
-
Diversity, stability and resilience of the human gut microbiota
-
Lozupone, C.A., Stombaugh, J.I., Gordon, J.I., Jansson, J.K. & Knight, R. Diversity, stability and resilience of the human gut microbiota. Nature 489, 220-230 (2012).
-
(2012)
Nature
, vol.489
, pp. 220-230
-
-
Lozupone, C.A.1
Stombaugh, J.I.2
Gordon, J.I.3
Jansson, J.K.4
Knight, R.5
-
7
-
-
84957436423
-
The sequence of sequencers: The history of sequencing DNA
-
Heather, J.M. & Chain, B. The sequence of sequencers: The history of sequencing DNA. Genomics 107, 1-8 (2016).
-
(2016)
Genomics
, vol.107
, pp. 1-8
-
-
Heather, J.M.1
Chain, B.2
-
8
-
-
0017681196
-
DNA sequencing with chain-Terminating inhibitors
-
Sanger, F., Nicklen, S. & Coulson, A.R. DNA sequencing with chain-Terminating inhibitors. Proc. Natl. Acad. Sci. USA 74, 5463-5467 (1977).
-
(1977)
Proc. Natl. Acad. Sci. USA
, vol.74
, pp. 5463-5467
-
-
Sanger, F.1
Nicklen, S.2
Coulson, A.R.3
-
9
-
-
0029653518
-
Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
-
Fleischmann, R.D. et al. Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science 269, 496-512 (1995).
-
(1995)
Science
, vol.269
, pp. 496-512
-
-
Fleischmann, R.D.1
-
10
-
-
15444350252
-
The complete genome sequence of Escherichia coli K-12
-
Blattner, F.R. et al. The complete genome sequence of Escherichia coli K-12. Science 277, 1453-1462 (1997).
-
(1997)
Science
, vol.277
, pp. 1453-1462
-
-
Blattner, F.R.1
-
11
-
-
84860756398
-
Performance comparison of benchtop high-Throughput sequencing platforms
-
Loman, N.J. et al. Performance comparison of benchtop high-Throughput sequencing platforms. Nat. Biotechnol. 30, 434-439 (2012).
-
(2012)
Nat. Biotechnol
, vol.30
, pp. 434-439
-
-
Loman, N.J.1
-
12
-
-
0032540905
-
A sequencing method based on real-Time pyrophosphate
-
Ronaghi, M., Uhlén, M & Nyrén, P. A sequencing method based on real-Time pyrophosphate. Science 281, 363, 365 (1998).
-
(1998)
Science
, vol.281
, Issue.363
, pp. 365
-
-
Ronaghi, M.1
Uhlén, M.2
Nyrén, P.3
-
13
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
Margulies, M. et al. Genome sequencing in microfabricated high-density picolitre reactors. Nature 437, 376-380 (2005).
-
(2005)
Nature
, vol.437
, pp. 376-380
-
-
Margulies, M.1
-
14
-
-
55549089660
-
Accurate whole human genome sequencing using reversible terminator chemistry
-
Bentley, D.R. et al. Accurate whole human genome sequencing using reversible terminator chemistry. Nature 456, 53-59 (2008).
-
(2008)
Nature
, vol.456
, pp. 53-59
-
-
Bentley, D.R.1
-
15
-
-
84881496498
-
The genome sequence of the colonial chordate, Botryllus schlosseri
-
Voskoboynik, A. et al. The genome sequence of the colonial chordate, Botryllus schlosseri. eLife 2, e00569 (2013).
-
(2013)
ELife
, vol.2
, pp. e00569
-
-
Voskoboynik, A.1
-
16
-
-
84992669880
-
Moleculo long-read sequencing facilitates assembly and genomic binning from complex soil metagenomes
-
White, R.A., III et al. Moleculo long-read sequencing facilitates assembly and genomic binning from complex soil metagenomes. mSystems 1, e00045-16 (2016).
-
(2016)
MSystems
, vol.1
, pp. e00045-e00046
-
-
White, R.A.1
-
17
-
-
84927744062
-
Accurate, multi-kb reads resolve complex populations and detect rare microorganisms
-
Sharon, I. et al. Accurate, multi-kb reads resolve complex populations and detect rare microorganisms. Genome Res. 25, 534-543 (2015).
-
(2015)
Genome Res
, vol.25
, pp. 534-543
-
-
Sharon, I.1
-
18
-
-
84953791854
-
Synthetic long-read sequencing reveals intraspecies diversity in the human microbiome
-
Kuleshov, V. et al. Synthetic long-read sequencing reveals intraspecies diversity in the human microbiome. Nat. Biotechnol. 34, 64-69 (2016).
-
(2016)
Nat. Biotechnol
, vol.34
, pp. 64-69
-
-
Kuleshov, V.1
-
19
-
-
0037474152
-
Zero-mode waveguides for single-molecule analysis at high concentrations
-
Levene, M.J. et al. Zero-mode waveguides for single-molecule analysis at high concentrations. Science 299, 682-686 (2003).
-
(2003)
Science
, vol.299
, pp. 682-686
-
-
Levene, M.J.1
-
20
-
-
58149234737
-
Real-Time DNA sequencing from single polymerase molecules
-
Eid, J. et al. Real-Time DNA sequencing from single polymerase molecules. Science 323, 133-138 (2009).
-
(2009)
Science
, vol.323
, pp. 133-138
-
-
Eid, J.1
-
21
-
-
84871222928
-
The methylomes of six bacteria
-
Murray, I.A. et al. The methylomes of six bacteria. Nucleic Acids Res. 40, 11450-11462 (2012).
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 11450-11462
-
-
Murray, I.A.1
-
22
-
-
84925352769
-
Assessing the performance of the oxford nanopore technologies minion
-
Laver, T. et al. Assessing the performance of the Oxford Nanopore Technologies MinION. Biomol. Detect. Quantif. 3, 1-8 (2015).
-
(2015)
Biomol. Detect. Quantif
, vol.3
, pp. 1-8
-
-
Laver, T.1
-
23
-
-
11144354360
-
Environmental genome shotgun sequencing of the sargasso sea
-
Venter, J.C. et al. Environmental genome shotgun sequencing of the Sargasso Sea. Science 304, 66-74 (2004).
-
(2004)
Science
, vol.304
, pp. 66-74
-
-
Venter, J.C.1
-
24
-
-
78649686679
-
A pyrosequencing study in twins shows that gastrointestinal microbial profiles vary with inflammatory bowel disease phenotypes
-
Willing BP, et al. A pyrosequencing study in twins shows that gastrointestinal microbial profiles vary with inflammatory bowel disease phenotypes. Gastroenterology 139, 1844-1854.e1 (2010).
-
(2010)
Gastroenterology
, vol.139
, pp. 1844-1854e1
-
-
Willing, B.P.1
-
25
-
-
84865318505
-
Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to deepwater horizon oil spill
-
Mason, O.U. et al. Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill. ISME J. 6, 1715-1727 (2012).
-
(2012)
ISME J
, vol.6
, pp. 1715-1727
-
-
Mason, O.U.1
-
26
-
-
84903393770
-
Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill
-
Mason, O.U. et al. Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill. ISME J. 8, 1464-1475 (2014).
-
(2014)
ISME J
, vol.8
, pp. 1464-1475
-
-
Mason, O.U.1
-
27
-
-
83555174830
-
Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw
-
Mackelprang, R. et al. Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw. Nature 480, 368-371 (2011).
-
(2011)
Nature
, vol.480
, pp. 368-371
-
-
Mackelprang, R.1
-
28
-
-
84929340364
-
Multi-omics of permafrost, active layer and thermokarst bog soil microbiomes
-
Hultman, J. et al. Multi-omics of permafrost, active layer and thermokarst bog soil microbiomes. Nature 521, 208-212 (2015).
-
(2015)
Nature
, vol.521
, pp. 208-212
-
-
Hultman, J.1
-
29
-
-
84925091835
-
Community transcriptomics reveals unexpected high microbial diversity in acidophilic biofilm communities
-
Goltsman, D.S.A., Comolli, L.R., Thomas, B.C. & Banfield, J.F. Community transcriptomics reveals unexpected high microbial diversity in acidophilic biofilm communities. ISME J. 9, 1014-1023 (2015).
-
(2015)
ISME J
, vol.9
, pp. 1014-1023
-
-
Goltsman, D.S.A.1
Comolli, L.R.2
Thomas, B.C.3
Banfield, J.F.4
-
30
-
-
84862590343
-
The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates
-
Zoetendal, E.G. et al. The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates. ISME J. 6, 1415-1426 (2012).
-
(2012)
ISME J
, vol.6
, pp. 1415-1426
-
-
Zoetendal, E.G.1
-
31
-
-
79956287318
-
Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean
-
Shi, Y., Tyson, G.W., Eppley, J.M. & DeLong, E.F. Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean. ISME J. 5, 999-1013 (2011).
-
(2011)
ISME J
, vol.5
, pp. 999-1013
-
-
Shi, Y.1
Tyson, G.W.2
Eppley, J.M.3
DeLong, E.F.4
-
32
-
-
41649114407
-
Microbial community gene expression in ocean surface waters
-
Frias-Lopez, J. et al. Microbial community gene expression in ocean surface waters. Proc. Natl. Acad. Sci. USA 105, 3805-3810 (2008).
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 3805-3810
-
-
Frias-Lopez, J.1
-
33
-
-
66149130975
-
Metatranscriptomics reveals unique microbial small RNAs in the oceans water column
-
Shi, Y., Tyson, G.W. & DeLong, E.F. Metatranscriptomics reveals unique microbial small RNAs in the oceans water column. Nature 459, 266-269 (2009).
-
(2009)
Nature
, vol.459
, pp. 266-269
-
-
Shi, Y.1
Tyson, G.W.2
DeLong, E.F.3
-
34
-
-
52449114817
-
Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities
-
Gilbert, J.A. et al. Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities. PLoS One 3, e3042 (2008).
-
(2008)
PLoS One
, vol.3
, pp. e3042
-
-
Gilbert, J.A.1
-
35
-
-
80053457314
-
Metagenomes and metatranscriptomes from the L4 long-Term coastal monitoring station in the Western English Channel
-
Gilbert, J.A. et al. Metagenomes and metatranscriptomes from the L4 long-Term coastal monitoring station in the Western English Channel. Stand. Genomic Sci. 3, 183-193 (2010).
-
(2010)
Stand. Genomic Sci
, vol.3
, pp. 183-193
-
-
Gilbert, J.A.1
-
36
-
-
33845471401
-
Negative ion source production with electrospray ion source
-
Yamashita, M. & Fenn, J.B. Negative ion source production with electrospray ion source. J. Phys. Chem. 88, 4671-4675 (1984).
-
(1984)
J. Phys. Chem
, vol.88
, pp. 4671-4675
-
-
Yamashita, M.1
Fenn, J.B.2
-
37
-
-
18344364097
-
The Orbitrap: A new mass spectrometer
-
Hu, Q., Noll, R.J., Li, H., Makarov, A., Hardman, M. & Graham Cooks R. The Orbitrap: A new mass spectrometer. J. Mass Spectrom. 40, 430-443 (2005).
-
(2005)
J. Mass Spectrom
, vol.40
, pp. 430-443
-
-
Hu, Q.1
Noll, R.J.2
Li, H.3
Makarov, A.4
Hardman, M.5
Graham Cooks, R.6
-
38
-
-
77951028799
-
The ion funnel: Theory, implementations, and applications
-
Kelly, R.T., Tolmachev, A.V., Page, J.S., Tang, K. & Smith, R.D. The ion funnel: Theory, implementations, and applications. Mass Spectrom. Rev. 29, 294-312 (2010).
-
(2010)
Mass Spectrom. Rev
, vol.29
, pp. 294-312
-
-
Kelly, R.T.1
Tolmachev, A.V.2
Page, J.S.3
Tang, K.4
Smith, R.D.5
-
39
-
-
84898745525
-
Advancing the high throughput identification of liver fibrosis protein signatures using multiplexed ion mobility spectrometry
-
Baker, E.S. et al. Advancing the high throughput identification of liver fibrosis protein signatures using multiplexed ion mobility spectrometry. Mol. Cell. Proteomics 13, 1119-1127 (2014).
-
(2014)
Mol. Cell. Proteomics
, vol.13
, pp. 1119-1127
-
-
Baker, E.S.1
-
40
-
-
84938738882
-
Enhancing bottom-up and top-down proteomic measurements with ion mobility separations
-
Baker, E.S. et al. Enhancing bottom-up and top-down proteomic measurements with ion mobility separations. Proteomics 15, 2766-2776 (2015).
-
(2015)
Proteomics
, vol.15
, pp. 2766-2776
-
-
Baker, E.S.1
-
41
-
-
21344465408
-
Community proteomics of a natural microbial biofilm
-
Ram, R.J. et al. Community proteomics of a natural microbial biofilm. Science 308, 1915-1920 (2005).
-
(2005)
Science
, vol.308
, pp. 1915-1920
-
-
Ram, R.J.1
-
42
-
-
84878658097
-
Leucoagaricus gongylophorus produces diverse enzymes for the degradation of recalcitrant plant polymers in leaf-cutter ant fungus gardens
-
Aylward, F.O. et al. Leucoagaricus gongylophorus produces diverse enzymes for the degradation of recalcitrant plant polymers in leaf-cutter ant fungus gardens. Appl. Environ. Microbiol. 79, 3770-3778 (2013).
-
(2013)
Appl. Environ. Microbiol
, vol.79
, pp. 3770-3778
-
-
Aylward, F.O.1
-
43
-
-
84943327753
-
Enrichment and broad representation of plant biomass-degrading enzymes in the specialized hyphal swellings of Leucoagaricus gongylophorus, the fungal symbiont of leaf-cutter ants
-
Aylward, F.O. et al. Enrichment and broad representation of plant biomass-degrading enzymes in the specialized hyphal swellings of Leucoagaricus gongylophorus, the fungal symbiont of leaf-cutter ants. PLoS One 10, e0134752, 2015
-
(2015)
PLoS One
, vol.10
, pp. e0134752
-
-
Aylward, F.O.1
-
44
-
-
84903638137
-
The fungus gardens of leaf-cutter ants undergo a distinct physiological transition during biomass degradation
-
Huang, E.L. et al. The fungus gardens of leaf-cutter ants undergo a distinct physiological transition during biomass degradation. Environ. Microbiol. Rep. 6, 389-395 (2014).
-
(2014)
Environ. Microbiol. Rep
, vol.6
, pp. 389-395
-
-
Huang, E.L.1
-
45
-
-
78650611536
-
Proteome insights into the symbiotic relationship between a captive colony of Nasutitermes corniger and its hindgut microbiome
-
Burnum, K.E. et al. Proteome insights into the symbiotic relationship between a captive colony of Nasutitermes corniger and its hindgut microbiome. ISME J. 5, 161-164 (2011).
-
(2011)
ISME J
, vol.5
, pp. 161-164
-
-
Burnum, K.E.1
-
46
-
-
58549089276
-
Shotgun metaproteomics of the human distal gut microbiota
-
Verberkmoes, N.C. et al. Shotgun metaproteomics of the human distal gut microbiota. ISME J. 3, 179-189 (2009).
-
(2009)
ISME J
, vol.3
, pp. 179-189
-
-
Verberkmoes, N.C.1
-
47
-
-
84875367422
-
Biostimulation induces syntrophic interactions that impact C, S and N cycling in a sediment microbial community
-
Handley, K.M. et al. Biostimulation induces syntrophic interactions that impact C, S and N cycling in a sediment microbial community. ISME J. 7, 800-816 (2013).
-
(2013)
ISME J
, vol.7
, pp. 800-816
-
-
Handley, K.M.1
-
48
-
-
84944152758
-
A decade of metaproteomics: Where we stand and what the future holds
-
Wilmes, P., Heintz-Buschart, A. & Bond, P.L. A decade of metaproteomics: where we stand and what the future holds. Proteomics 15, 3409-3417 (2015).
-
(2015)
Proteomics
, vol.15
, pp. 3409-3417
-
-
Wilmes, P.1
Heintz-Buschart, A.2
Bond, P.L.3
-
49
-
-
84979041415
-
A multi-omic future for microbiome studies
-
Jansson, J.K. & Baker, E.S. A multi-omic future for microbiome studies. Nat. Microbiol. 1, 16049 (2016).
-
(2016)
Nat. Microbiol
, vol.1
, pp. 16049
-
-
Jansson, J.K.1
Baker, E.S.2
|