-
1
-
-
46249085739
-
Evolution of mammals and their gut microbes
-
Ley R.E., Hamady M., Lozupone C., Turnbaugh P.J., Ramey R.R., Bircher J.S., Schlegel M.L., Tucker T.A., Schrenzel M.D., Knight R., Gordon J.I. Evolution of mammals and their gut microbes. Science 2008, 320:1647-1651.
-
(2008)
Science
, vol.320
, pp. 1647-1651
-
-
Ley, R.E.1
Hamady, M.2
Lozupone, C.3
Turnbaugh, P.J.4
Ramey, R.R.5
Bircher, J.S.6
Schlegel, M.L.7
Tucker, T.A.8
Schrenzel, M.D.9
Knight, R.10
Gordon, J.I.11
-
2
-
-
79952005915
-
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
-
Caporaso J.G., Lauber C.L., Walters W.A., Berg-Lyons D., Lozupone C.A., Turnbaugh P.J., Fierer N., Knight R. Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. Proc Natl Acad Sci USA 2011, 108:4516-4522.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 4516-4522
-
-
Caporaso, J.G.1
Lauber, C.L.2
Walters, W.A.3
Berg-Lyons, D.4
Lozupone, C.A.5
Turnbaugh, P.J.6
Fierer, N.7
Knight, R.8
-
3
-
-
78049522796
-
Long-term impacts of antibiotic exposure on the human intestinal microbiota
-
Jernberg C., Lofmark S., Edlund C., Jansson J.K. Long-term impacts of antibiotic exposure on the human intestinal microbiota. Microbiol-Sgm 2010, 156:3216-3223.
-
(2010)
Microbiol-Sgm
, vol.156
, pp. 3216-3223
-
-
Jernberg, C.1
Lofmark, S.2
Edlund, C.3
Jansson, J.K.4
-
4
-
-
41849127118
-
Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome
-
Turnbaugh P.J., Baeckhed F., Fulton L., Gordon J.I. Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome. Cell Host Microbe 2008, 3:213-223.
-
(2008)
Cell Host Microbe
, vol.3
, pp. 213-223
-
-
Turnbaugh, P.J.1
Baeckhed, F.2
Fulton, L.3
Gordon, J.I.4
-
5
-
-
60549114321
-
Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases
-
Brulc J.M., Antonopoulos D.A., Miller M.E.B., Wilson M.K., Yannarell A.C., Dinsdale E.A., Edwards R.E., Frank E.D., Emerson J.B., Wacklin P., et al. Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases. Proc Natl Acad Sci USA 2009, 106:1948-1953.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 1948-1953
-
-
Brulc, J.M.1
Antonopoulos, D.A.2
Miller, M.E.B.3
Wilson, M.K.4
Yannarell, A.C.5
Dinsdale, E.A.6
Edwards, R.E.7
Frank, E.D.8
Emerson, J.B.9
Wacklin, P.10
-
6
-
-
78649270064
-
Functional metagenomics to mine the human gut microbiome for dietary fiber catabolic enzymes
-
Tasse L., Bercovici J., Pizzut-Serin S., Robe P., Tap J., Klopp C., Cantarel B.L., Coutinho P.M., Henrissat B., Leclerc M., et al. Functional metagenomics to mine the human gut microbiome for dietary fiber catabolic enzymes. Genome Res 2010, 20:1605-1612.
-
(2010)
Genome Res
, vol.20
, pp. 1605-1612
-
-
Tasse, L.1
Bercovici, J.2
Pizzut-Serin, S.3
Robe, P.4
Tap, J.5
Klopp, C.6
Cantarel, B.L.7
Coutinho, P.M.8
Henrissat, B.9
Leclerc, M.10
-
7
-
-
33845874101
-
An obesity-associated gut microbiome with increased capacity for energy harvest
-
Turnbaugh P.J., Ley R.E., Mahowald M.A., Magrini V., Mardis E.R., Gordon J.I. An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 2006, 444:1027-1031.
-
(2006)
Nature
, vol.444
, pp. 1027-1031
-
-
Turnbaugh, P.J.1
Ley, R.E.2
Mahowald, M.A.3
Magrini, V.4
Mardis, E.R.5
Gordon, J.I.6
-
8
-
-
40649127901
-
Necrotizing enterocolitis in premature twins with twin-to-twin transfusion syndrome
-
Detlefsen B., Boemers T.M., Schimke C. Necrotizing enterocolitis in premature twins with twin-to-twin transfusion syndrome. Eur J Pediatr Surg 2008, 18:50-52.
-
(2008)
Eur J Pediatr Surg
, vol.18
, pp. 50-52
-
-
Detlefsen, B.1
Boemers, T.M.2
Schimke, C.3
-
9
-
-
80052848478
-
Impaired carbohydrate digestion and transport and mucosal dysbiosis in the intestines of children with autism and gastrointestinal disturbances
-
Williams B.L., Hornig M., Buie T., Bauman M.L., Paik M.C., Wick I., Bennett A., Jabado O., Hirschberg D.L., Lipkin W.I. Impaired carbohydrate digestion and transport and mucosal dysbiosis in the intestines of children with autism and gastrointestinal disturbances. PLoS ONE 2011, 6.
-
(2011)
PLoS ONE
, vol.6
-
-
Williams, B.L.1
Hornig, M.2
Buie, T.3
Bauman, M.L.4
Paik, M.C.5
Wick, I.6
Bennett, A.7
Jabado, O.8
Hirschberg, D.L.9
Lipkin, W.I.10
-
10
-
-
78649686679
-
A pyrosequencing study in twins shows that gastrointestinal microbial profiles vary with inflammatory bowel disease phenotypes
-
1844-U1105
-
Willing B.P., Dicksved J., Halfvarson J., Andersson A.F., Lucio M., Zheng Z., Jarnerot G., Tysk C., Jansson J.K., Engstrand L. A pyrosequencing study in twins shows that gastrointestinal microbial profiles vary with inflammatory bowel disease phenotypes. Gastroenterology 2010, 139. 1844-U1105.
-
(2010)
Gastroenterology
, vol.139
-
-
Willing, B.P.1
Dicksved, J.2
Halfvarson, J.3
Andersson, A.F.4
Lucio, M.5
Zheng, Z.6
Jarnerot, G.7
Tysk, C.8
Jansson, J.K.9
Engstrand, L.10
-
11
-
-
77951700268
-
Changes in the composition of the human fecal microbiome after bacteriotherapy for recurrent clostridium difficile-associated diarrhea
-
Khoruts A., Dicksved J., Jansson J.K., Sadowsky M.J. Changes in the composition of the human fecal microbiome after bacteriotherapy for recurrent clostridium difficile-associated diarrhea. J Clin Gastroenterol 2010, 44:354-360.
-
(2010)
J Clin Gastroenterol
, vol.44
, pp. 354-360
-
-
Khoruts, A.1
Dicksved, J.2
Jansson, J.K.3
Sadowsky, M.J.4
-
12
-
-
68149099597
-
Metabolomics reveals metabolic biomarkers of Crohn's disease
-
Jansson J., Willing B., Lucio M., Fekete A., Dicksved J., Halfvarson J., Tysk C., Schmitt-Kopplin P. Metabolomics reveals metabolic biomarkers of Crohn's disease. PLoS ONE 2009, 4.
-
(2009)
PLoS ONE
, vol.4
-
-
Jansson, J.1
Willing, B.2
Lucio, M.3
Fekete, A.4
Dicksved, J.5
Halfvarson, J.6
Tysk, C.7
Schmitt-Kopplin, P.8
-
13
-
-
66249129571
-
Twin studies reveal specific imbalances in the mucosa-associated microbiota of patients with Ileal Crohn's disease
-
Willing B., Halfvarson J., Dicksved J., Rosenquist M., Jarnerot G., Engstrand L., Tysk C., Jansson J.K. Twin studies reveal specific imbalances in the mucosa-associated microbiota of patients with Ileal Crohn's disease. Inflamm Bowel Dis 2009, 15:653-660.
-
(2009)
Inflamm Bowel Dis
, vol.15
, pp. 653-660
-
-
Willing, B.1
Halfvarson, J.2
Dicksved, J.3
Rosenquist, M.4
Jarnerot, G.5
Engstrand, L.6
Tysk, C.7
Jansson, J.K.8
-
14
-
-
79952763661
-
Succession of microbial consortia in the developing infant gut microbiome
-
Koenig J.E., Spor A., Scalfone N., Fricker A.D., Stombaugh J., Knight R., Angenent L.T., Ley R.E. Succession of microbial consortia in the developing infant gut microbiome. Proc Natl Acad Sci USA 2011, 108:4578-4585.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 4578-4585
-
-
Koenig, J.E.1
Spor, A.2
Scalfone, N.3
Fricker, A.D.4
Stombaugh, J.5
Knight, R.6
Angenent, L.T.7
Ley, R.E.8
-
15
-
-
72949091232
-
Bacterial community variation in human body habitats across space and time
-
Costello E.K., Lauber C.L., Hamady M., Fierer N., Gordon J.I., Knight R. Bacterial community variation in human body habitats across space and time. Science 2009, 326:1694-1697.
-
(2009)
Science
, vol.326
, pp. 1694-1697
-
-
Costello, E.K.1
Lauber, C.L.2
Hamady, M.3
Fierer, N.4
Gordon, J.I.5
Knight, R.6
-
16
-
-
32944466887
-
Ecological and evolutionary forces shaping microbial diversity in the human intestine
-
Ley R.E., Peterson D.A., Gordon J.I. Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell 2006, 124:837-848.
-
(2006)
Cell
, vol.124
, pp. 837-848
-
-
Ley, R.E.1
Peterson, D.A.2
Gordon, J.I.3
-
17
-
-
52049092682
-
Worlds within worlds: evolution of the vertebrate gut microbiota
-
Ley R.E., Lozupone C.A., Hamady M., Knight R., Gordon J.I. Worlds within worlds: evolution of the vertebrate gut microbiota. Nat Rev Microbiol 2008, 6:776-788.
-
(2008)
Nat Rev Microbiol
, vol.6
, pp. 776-788
-
-
Ley, R.E.1
Lozupone, C.A.2
Hamady, M.3
Knight, R.4
Gordon, J.I.5
-
18
-
-
77955067191
-
Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags
-
Wu G.D., Lewis J.D., Hoffmann C., Chen Y.Y., Knight R., Bittinger K., Hwang J., Chen J., Berkowsky R., Nessel L., et al. Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags. BMC Microbiol 2010, 10.
-
(2010)
BMC Microbiol
, vol.10
-
-
Wu, G.D.1
Lewis, J.D.2
Hoffmann, C.3
Chen, Y.Y.4
Knight, R.5
Bittinger, K.6
Hwang, J.7
Chen, J.8
Berkowsky, R.9
Nessel, L.10
-
19
-
-
79959794996
-
The earth microbiome project: meeting report of the " 1st EMP meeting on sample selection and acquisition" at Argonne National Laboratory October 6(th) 2010
-
Gilbert J.A., Meyer F., Jansson J., Gordon J., Pace N., Tiedje J., Ley R., Fierer N., Field D., Kyrpides N., et al. The earth microbiome project: meeting report of the " 1st EMP meeting on sample selection and acquisition" at Argonne National Laboratory October 6(th) 2010. Stand Genomic Sci 2010, 3:249-253.
-
(2010)
Stand Genomic Sci
, vol.3
, pp. 249-253
-
-
Gilbert, J.A.1
Meyer, F.2
Jansson, J.3
Gordon, J.4
Pace, N.5
Tiedje, J.6
Ley, R.7
Fierer, N.8
Field, D.9
Kyrpides, N.10
-
20
-
-
58749112734
-
A core gut microbiome in obese and lean twins
-
Turnbaugh P.J., Hamady M., Yatsunenko T., Cantarel B.L., Duncan A., Ley R.E., Sogin M.L., Jones W.J., Roe B.A., Affourtit J.P., et al. A core gut microbiome in obese and lean twins. Nature 2009, 457:480-487.
-
(2009)
Nature
, vol.457
, pp. 480-487
-
-
Turnbaugh, P.J.1
Hamady, M.2
Yatsunenko, T.3
Cantarel, B.L.4
Duncan, A.5
Ley, R.E.6
Sogin, M.L.7
Jones, W.J.8
Roe, B.A.9
Affourtit, J.P.10
-
21
-
-
38449088143
-
Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes
-
Kurokawa K., Itoh T., Kuwahara T., Oshima K., Toh H., Toyoda A., Takami H., Morita H., Sharma V.K., Srivastava T.P., et al. Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes. DNA Res 2007, 14:169-181.
-
(2007)
DNA Res
, vol.14
, pp. 169-181
-
-
Kurokawa, K.1
Itoh, T.2
Kuwahara, T.3
Oshima, K.4
Toh, H.5
Toyoda, A.6
Takami, H.7
Morita, H.8
Sharma, V.K.9
Srivastava, T.P.10
-
22
-
-
79251587455
-
Metagenomic discovery of biomass-degrading genes and genomes from cow rumen
-
Hess M., Sczyrba A., Egan R., Kim T.W., Chokhawala H., Schroth G., Luo S.J., Clark D.S., Chen F., Zhang T., et al. Metagenomic discovery of biomass-degrading genes and genomes from cow rumen. Science 2011, 331:463-467.
-
(2011)
Science
, vol.331
, pp. 463-467
-
-
Hess, M.1
Sczyrba, A.2
Egan, R.3
Kim, T.W.4
Chokhawala, H.5
Schroth, G.6
Luo, S.J.7
Clark, D.S.8
Chen, F.9
Zhang, T.10
-
23
-
-
79955794476
-
Comparative fecal metagenomics unveils unique functional capacity of the swine gut
-
Lamendella R., Domingo J.W.S., Ghosh S., Martinson J., Oerther D.B. Comparative fecal metagenomics unveils unique functional capacity of the swine gut. BMC Microbiol 2011, 11.
-
(2011)
BMC Microbiol
, vol.11
-
-
Lamendella, R.1
Domingo, J.W.S.2
Ghosh, S.3
Martinson, J.4
Oerther, D.B.5
-
24
-
-
84900563153
-
Enterotypes of the human gut microbiome (vol 473, pg 174, 2011)
-
Arumugam M., Raes J., Pelletier E., Le Paslier D., Yamada T., Mende D.R., Fernandes G.R., Tap J., Bruls T., Batto J.M., et al. Enterotypes of the human gut microbiome (vol 473, pg 174, 2011). Nature 2011, 474.
-
(2011)
Nature
, vol.474
-
-
Arumugam, M.1
Raes, J.2
Pelletier, E.3
Le Paslier, D.4
Yamada, T.5
Mende, D.R.6
Fernandes, G.R.7
Tap, J.8
Bruls, T.9
Batto, J.M.10
-
25
-
-
77950251400
-
A human gut microbial gene catalogue established by metagenomic sequencing
-
59-U70
-
Qin J.J., Li R.Q., Raes J., Arumugam M., Burgdorf K.S., Manichanh C., Nielsen T., Pons N., Levenez F., Yamada T., et al. A human gut microbial gene catalogue established by metagenomic sequencing. Nature 2010, 464. 59-U70.
-
(2010)
Nature
, vol.464
-
-
Qin, J.J.1
Li, R.Q.2
Raes, J.3
Arumugam, M.4
Burgdorf, K.S.5
Manichanh, C.6
Nielsen, T.7
Pons, N.8
Levenez, F.9
Yamada, T.10
-
26
-
-
77957927457
-
Gut microbial gene expression in mother-fed and formula-fed piglets
-
Poroyko V., White J.R., Wang M., Donovan S., Alverdy J., Liu D.C., Morowitz M.J. Gut microbial gene expression in mother-fed and formula-fed piglets. PLoS ONE 2010, 5.
-
(2010)
PLoS ONE
, vol.5
-
-
Poroyko, V.1
White, J.R.2
Wang, M.3
Donovan, S.4
Alverdy, J.5
Liu, D.C.6
Morowitz, M.J.7
-
27
-
-
77955963505
-
Metatranscriptome analysis of the human fecal microbiota reveals subject-specific expression profiles, with genes encoding proteins involved in carbohydrate metabolism being dominantly expressed
-
Booijink C.C.G.M., Boekhorst J., Zoetendal E.G., Smidt H., Kleerebezem M., de Vos W.M. Metatranscriptome analysis of the human fecal microbiota reveals subject-specific expression profiles, with genes encoding proteins involved in carbohydrate metabolism being dominantly expressed. Appl Environ Microbiol 2010, 76:5533-5540.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 5533-5540
-
-
Booijink, C.C.G.M.1
Boekhorst, J.2
Zoetendal, E.G.3
Smidt, H.4
Kleerebezem, M.5
de Vos, W.M.6
-
28
-
-
79952401369
-
Metatranscriptomic approach to analyze the functional human gut microbiota
-
Gosalbes M.J., Durban A., Pignatelli M., Abellan J.J., Jimenez-Hernandez N., Perez-Cobas A.E., Latorre A., Moya A. Metatranscriptomic approach to analyze the functional human gut microbiota. PLoS ONE 2011, 6.
-
(2011)
PLoS ONE
, vol.6
-
-
Gosalbes, M.J.1
Durban, A.2
Pignatelli, M.3
Abellan, J.J.4
Jimenez-Hernandez, N.5
Perez-Cobas, A.E.6
Latorre, A.7
Moya, A.8
-
29
-
-
58549089276
-
Shotgun metaproteomics of the human distal gut microbiota
-
Verberkmoes N.C., Russell A.L., Shah M., Godzik A., Rosenquist M., Halfvarson J., Lefsrud M.G., Apajalahti J., Tysk C., Hettich R.L., Jansson J.K. Shotgun metaproteomics of the human distal gut microbiota. ISME J 2009, 3:179-189.
-
(2009)
ISME J
, vol.3
, pp. 179-189
-
-
Verberkmoes, N.C.1
Russell, A.L.2
Shah, M.3
Godzik, A.4
Rosenquist, M.5
Halfvarson, J.6
Lefsrud, M.G.7
Apajalahti, J.8
Tysk, C.9
Hettich, R.L.10
Jansson, J.K.11
-
30
-
-
81755176064
-
Strategies for metagenomic-guided whole-community proteomics of complex microbial environments
-
Cantarel B.L., Erickson A.R., Verberkmoes N.C., Erickson B.K., Carey P.A., Pan C., Shah M., Mongodin E.F., Jansson J.K., Fraser-Liggett C.M., Hettich R.L. Strategies for metagenomic-guided whole-community proteomics of complex microbial environments. PLoS ONE 2011, 6:e27173.
-
(2011)
PLoS ONE
, vol.6
-
-
Cantarel, B.L.1
Erickson, A.R.2
Verberkmoes, N.C.3
Erickson, B.K.4
Carey, P.A.5
Pan, C.6
Shah, M.7
Mongodin, E.F.8
Jansson, J.K.9
Fraser-Liggett, C.M.10
Hettich, R.L.11
-
31
-
-
78650780115
-
An iterative workflow for mining the human intestinal metaproteome
-
Rooijers K., Kolmeder C., Juste C., Dore J., de Been M., Boeren S., Galan P., Beauvallet C., de Vos W.M., Schaap P.J. An iterative workflow for mining the human intestinal metaproteome. BMC Genomics 2011, 12.
-
(2011)
BMC Genomics
, vol.12
-
-
Rooijers, K.1
Kolmeder, C.2
Juste, C.3
Dore, J.4
de Been, M.5
Boeren, S.6
Galan, P.7
Beauvallet, C.8
de Vos, W.M.9
Schaap, P.J.10
-
32
-
-
81455144570
-
A metaproteomic approach to study human-microbial ecosystems at the mucosal luminal interface
-
Li X., LeBlanc J., Truong A., Vuthoori R., Chen S.S., Lustgarten J.L., Roth B., Allard J., Ippoliti A., Presley L.L., et al. A metaproteomic approach to study human-microbial ecosystems at the mucosal luminal interface. PLoS ONE 2011, 6:e26542.
-
(2011)
PLoS ONE
, vol.6
-
-
Li, X.1
LeBlanc, J.2
Truong, A.3
Vuthoori, R.4
Chen, S.S.5
Lustgarten, J.L.6
Roth, B.7
Allard, J.8
Ippoliti, A.9
Presley, L.L.10
-
33
-
-
79952712983
-
Gut microbiome-host interactions in health and disease
-
Kinross J.M., Darzi A.W., Nicholson J.K. Gut microbiome-host interactions in health and disease. Genome Med 2011, 3:14.
-
(2011)
Genome Med
, vol.3
, pp. 14
-
-
Kinross, J.M.1
Darzi, A.W.2
Nicholson, J.K.3
-
34
-
-
38649108480
-
Species variation in the fecal metabolome gives insight into differential gastrointestinal function
-
Saric J., Wang Y., Li J., Coen M., Utzinger J., Marchesi J.R., Keiser J., Veselkov K., Lindon J.C., Nicholson J.K., Holmes E. Species variation in the fecal metabolome gives insight into differential gastrointestinal function. J Proteome Res 2008, 7:352-360.
-
(2008)
J Proteome Res
, vol.7
, pp. 352-360
-
-
Saric, J.1
Wang, Y.2
Li, J.3
Coen, M.4
Utzinger, J.5
Marchesi, J.R.6
Keiser, J.7
Veselkov, K.8
Lindon, J.C.9
Nicholson, J.K.10
Holmes, E.11
-
35
-
-
62649151803
-
Metabolomics analysis reveals large effects of gut microflora on mammalian blood metabolites
-
Wikoff W.R., Anfora A.T., Liu J., Schultz P.G., Lesley S.A., Peters E.C., Siuzdak G. Metabolomics analysis reveals large effects of gut microflora on mammalian blood metabolites. Proc Natl Acad Sci USA 2009, 106:3698-3703.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 3698-3703
-
-
Wikoff, W.R.1
Anfora, A.T.2
Liu, J.3
Schultz, P.G.4
Lesley, S.A.5
Peters, E.C.6
Siuzdak, G.7
-
36
-
-
67650394402
-
Topographical variation in murine intestinal metabolic profiles in relation to microbiome speciation and functional ecological activity
-
Martin F.P., Wang Y., Yap I.K., Sprenger N., Lindon J.C., Rezzi S., Kochhar S., Holmes E., Nicholson J.K. Topographical variation in murine intestinal metabolic profiles in relation to microbiome speciation and functional ecological activity. J Proteome Res 2009, 8:3464-3474.
-
(2009)
J Proteome Res
, vol.8
, pp. 3464-3474
-
-
Martin, F.P.1
Wang, Y.2
Yap, I.K.3
Sprenger, N.4
Lindon, J.C.5
Rezzi, S.6
Kochhar, S.7
Holmes, E.8
Nicholson, J.K.9
-
37
-
-
65249149643
-
Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla
-
Mahowald M.A., Rey F.E., Seedorf H., Turnbaugh P.J., Fulton R.S., Wollam A., Shah N., Wang C., Magrini V., Wilson R.K., et al. Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla. Proc Natl Acad Sci USA 2009, 106:5859-5864.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 5859-5864
-
-
Mahowald, M.A.1
Rey, F.E.2
Seedorf, H.3
Turnbaugh, P.J.4
Fulton, R.S.5
Wollam, A.6
Shah, N.7
Wang, C.8
Magrini, V.9
Wilson, R.K.10
-
38
-
-
79956301905
-
Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans
-
Muegge B.D., Kuczynski J., Knights D., Clemente J.C., Gonzalez A., Fontana L., Henrissat B., Knight R., Gordon J.I. Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans. Science 2011, 332:970-974.
-
(2011)
Science
, vol.332
, pp. 970-974
-
-
Muegge, B.D.1
Kuczynski, J.2
Knights, D.3
Clemente, J.C.4
Gonzalez, A.5
Fontana, L.6
Henrissat, B.7
Knight, R.8
Gordon, J.I.9
-
39
-
-
77950847866
-
Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota
-
908-U123
-
Hehemann J.H., Correc G., Barbeyron T., Helbert W., Czjzek M., Michel G. Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota. Nature 2010, 464. 908-U123.
-
(2010)
Nature
, vol.464
-
-
Hehemann, J.H.1
Correc, G.2
Barbeyron, T.3
Helbert, W.4
Czjzek, M.5
Michel, G.6
-
40
-
-
80053618114
-
Linking long-term dietary patterns with gut microbial enterotypes
-
Wu G.D., Chen J., Hoffmann C., Bittinger K., Chen Y.Y., Keilbaugh S.A., Bewtra M., Knights D., Walters W.A., Knight R., et al. Linking long-term dietary patterns with gut microbial enterotypes. Science 2011, 333:105-108.
-
(2011)
Science
, vol.333
, pp. 105-108
-
-
Wu, G.D.1
Chen, J.2
Hoffmann, C.3
Bittinger, K.4
Chen, Y.Y.5
Keilbaugh, S.A.6
Bewtra, M.7
Knights, D.8
Walters, W.A.9
Knight, R.10
-
41
-
-
77957075815
-
Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa
-
De Filippo C., Cavalieri D., Di Paola M., Ramazzotti M., Poullet J.B., Massart S., Collini S., Pieraccini G., Lionetti P. Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa. Proc Natl Acad Sci USA 2010, 107:14691-14696.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 14691-14696
-
-
De Filippo, C.1
Cavalieri, D.2
Di Paola, M.3
Ramazzotti, M.4
Poullet, J.B.5
Massart, S.6
Collini, S.7
Pieraccini, G.8
Lionetti, P.9
-
42
-
-
80054093637
-
Environmental and gut bacteroidetes: the food connection
-
Thomas F., Hehemann J.H., Rebuffet E., Czjzek M., Michel G. Environmental and gut bacteroidetes: the food connection. Front Microbiol 2011, 2:93.
-
(2011)
Front Microbiol
, vol.2
, pp. 93
-
-
Thomas, F.1
Hehemann, J.H.2
Rebuffet, E.3
Czjzek, M.4
Michel, G.5
-
43
-
-
79751476499
-
High genetic diversity and different distributions of glycosyl hydrolase family 10 and 11 xylanases in the goat rumen
-
Wang G.Z., Luo H.Y., Meng K., Wang Y.R., Huang H.Q., Shi P.J., Pan X., Yang P.L., Diao Q.Y., Zhang H.F., Yao B. High genetic diversity and different distributions of glycosyl hydrolase family 10 and 11 xylanases in the goat rumen. PLoS ONE 2011, 6.
-
(2011)
PLoS ONE
, vol.6
-
-
Wang, G.Z.1
Luo, H.Y.2
Meng, K.3
Wang, Y.R.4
Huang, H.Q.5
Shi, P.J.6
Pan, X.7
Yang, P.L.8
Diao, Q.Y.9
Zhang, H.F.10
Yao, B.11
-
44
-
-
66749118301
-
Top-down systems biology modeling of host metabotype-microbiome associations in obese rodents
-
Waldram A., Holmes E., Wang Y., Rantalainen M., Wilson I.D., Tuohy K.M., McCartney A.L., Gibson G.R., Nicholson J.K. Top-down systems biology modeling of host metabotype-microbiome associations in obese rodents. J Proteome Res 2009, 8:2361-2375.
-
(2009)
J Proteome Res
, vol.8
, pp. 2361-2375
-
-
Waldram, A.1
Holmes, E.2
Wang, Y.3
Rantalainen, M.4
Wilson, I.D.5
Tuohy, K.M.6
McCartney, A.L.7
Gibson, G.R.8
Nicholson, J.K.9
-
45
-
-
84856631951
-
Gut microbiota modulate the metabolism of brown adipose tissue in mice
-
Mestdagh R., Dumas M.E., Rezzi S., Kochhar S., Holmes E., Claus S.P., Nicholson J.K. Gut microbiota modulate the metabolism of brown adipose tissue in mice. J Proteome Res 2012, 11:620-630.
-
(2012)
J Proteome Res
, vol.11
, pp. 620-630
-
-
Mestdagh, R.1
Dumas, M.E.2
Rezzi, S.3
Kochhar, S.4
Holmes, E.5
Claus, S.P.6
Nicholson, J.K.7
-
46
-
-
70349488325
-
Low counts of Faecalibacterium prausnitzii in colitis microbiota
-
Sokol H., Seksik P., Furet J.P., Firmesse O., Nion-Larmurier I., Beaugerie L., Cosnes J., Corthier G., Marteau P., Dore J. Low counts of Faecalibacterium prausnitzii in colitis microbiota. Inflamm Bowel Dis 2009, 15:1183-1189.
-
(2009)
Inflamm Bowel Dis
, vol.15
, pp. 1183-1189
-
-
Sokol, H.1
Seksik, P.2
Furet, J.P.3
Firmesse, O.4
Nion-Larmurier, I.5
Beaugerie, L.6
Cosnes, J.7
Corthier, G.8
Marteau, P.9
Dore, J.10
-
47
-
-
68649103962
-
16S rRNA gene-based analysis of fecal microbiota from preterm infants with and without necrotizing enterocolitis
-
Wang Y.W., Hoenig J.D., Malin K.J., Qamar S., Petrof E.O., Sun J., Antonopoulos D.A., Chang E.B., Claud E.C. 16S rRNA gene-based analysis of fecal microbiota from preterm infants with and without necrotizing enterocolitis. ISME J 2009, 3:944-954.
-
(2009)
ISME J
, vol.3
, pp. 944-954
-
-
Wang, Y.W.1
Hoenig, J.D.2
Malin, K.J.3
Qamar, S.4
Petrof, E.O.5
Sun, J.6
Antonopoulos, D.A.7
Chang, E.B.8
Claud, E.C.9
-
48
-
-
84866629141
-
Clinical utility of probiotics in inflammatory bowel disease
-
Cain A.M., Karpa K.D. Clinical utility of probiotics in inflammatory bowel disease. Altern Ther Health Med 2011, 17:72-79.
-
(2011)
Altern Ther Health Med
, vol.17
, pp. 72-79
-
-
Cain, A.M.1
Karpa, K.D.2
-
49
-
-
84861447826
-
Anti-inflammatory and immunomodulatory efficacy of indigenous probiotic Lactobacillus plantarum Lp91 in colitis mouse model
-
Duary R.K., Bhausaheb M.A., Batish V.K., Grover S. Anti-inflammatory and immunomodulatory efficacy of indigenous probiotic Lactobacillus plantarum Lp91 in colitis mouse model. Mol Biol Rep 2012, 39:4765-4775.
-
(2012)
Mol Biol Rep
, vol.39
, pp. 4765-4775
-
-
Duary, R.K.1
Bhausaheb, M.A.2
Batish, V.K.3
Grover, S.4
-
50
-
-
82755184864
-
The footprints of gut microbial-mammalian co-metabolism
-
Zheng X., Xie G., Zhao A., Zhao L., Yao C., Chiu N.H., Zhou Z., Bao Y., Jia W., Nicholson J.K. The footprints of gut microbial-mammalian co-metabolism. J Proteome Res 2011, 10:5512-5522.
-
(2011)
J Proteome Res
, vol.10
, pp. 5512-5522
-
-
Zheng, X.1
Xie, G.2
Zhao, A.3
Zhao, L.4
Yao, C.5
Chiu, N.H.6
Zhou, Z.7
Bao, Y.8
Jia, W.9
Nicholson, J.K.10
-
51
-
-
79551694651
-
The microbiome-gut-brain axis: from bowel to behavior
-
Cryan J.F., O'Mahony S.M. The microbiome-gut-brain axis: from bowel to behavior. Neurogastroenterol Motil 2011, 23:187-192.
-
(2011)
Neurogastroenterol Motil
, vol.23
, pp. 187-192
-
-
Cryan, J.F.1
O'Mahony, S.M.2
-
52
-
-
77956625161
-
Involvement of the gut microbiota in the development of low grade inflammation associated with obesity: focus on this neglected partner
-
Cani P.D., Delzenne N.M. Involvement of the gut microbiota in the development of low grade inflammation associated with obesity: focus on this neglected partner. Acta Gastroenterol Belg 2010, 73:267-269.
-
(2010)
Acta Gastroenterol Belg
, vol.73
, pp. 267-269
-
-
Cani, P.D.1
Delzenne, N.M.2
-
53
-
-
79952758083
-
Human oral, gut, and plaque microbiota in patients with atherosclerosis
-
Koren O., Spor A., Felin J., Fak F., Stombaugh J., Tremaroli V., Behre C.J., Knight R., Fagerberg B., Ley R.E., Backhed F. Human oral, gut, and plaque microbiota in patients with atherosclerosis. Proc Natl Acad Sci USA 2011, 108(Suppl. 1):4592-4598.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, Issue.SUPPL. 1
, pp. 4592-4598
-
-
Koren, O.1
Spor, A.2
Felin, J.3
Fak, F.4
Stombaugh, J.5
Tremaroli, V.6
Behre, C.J.7
Knight, R.8
Fagerberg, B.9
Ley, R.E.10
Backhed, F.11
-
54
-
-
84855477382
-
Comparison of serum metabolite compositions between obese and lean growing pigs using an NMR-based metabonomic approach
-
He Q., Ren P., Kong X., Wu Y., Wu G., Li P., Hao F., Tang H., Blachier F., Yin Y. Comparison of serum metabolite compositions between obese and lean growing pigs using an NMR-based metabonomic approach. J Nutr Biochem 2012, 23:133-139.
-
(2012)
J Nutr Biochem
, vol.23
, pp. 133-139
-
-
He, Q.1
Ren, P.2
Kong, X.3
Wu, Y.4
Wu, G.5
Li, P.6
Hao, F.7
Tang, H.8
Blachier, F.9
Yin, Y.10
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