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Volumn 24, Issue 1, 2016, Pages 172-184

Integrated Network Analysis Reveals an Association between Plasma Mannose Levels and Insulin Resistance

(17)  Lee, Sunjae a   Zhang, Cheng a   Kilicarslan, Murat b   Piening, Brian D c   Bjornson, Elias d,e   Hallström, Björn M a   Groen, Albert K f   Ferrannini, Ele g   Laakso, Markku h   Snyder, Michael c   Blüher, Matthias i   Uhlen, Mathias a   Nielsen, Jens a,d   Smith, Ulf e,j   Serlie, Mireille J b   Boren, Jan e   Mardinoglu, Adil a,d  


Author keywords

genome scale metabolic models; insulin resistance; mannose; obesity; protein protein interaction networks; transcriptional regulatory networks

Indexed keywords

FRUCTOSE; INSULIN; MANNOSE;

EID: 84992391872     PISSN: 15504131     EISSN: 19327420     Source Type: Journal    
DOI: 10.1016/j.cmet.2016.05.026     Document Type: Article
Times cited : (133)

References (59)
  • 1
    • 68349143277 scopus 로고    scopus 로고
    • Enzymatic properties of the N- and C-terminal halves of human hexokinase II
    • Ahn, K.J., Kim, J., Yun, M., Park, J.H., Lee, J.D., Enzymatic properties of the N- and C-terminal halves of human hexokinase II. BMB Rep. 42 (2009), 350–355.
    • (2009) BMB Rep. , vol.42 , pp. 350-355
    • Ahn, K.J.1    Kim, J.2    Yun, M.3    Park, J.H.4    Lee, J.D.5
  • 2
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • Anders, S., Huber, W., Differential expression analysis for sequence count data. Genome Biol., 11, 2010, R106.
    • (2010) Genome Biol. , vol.11 , pp. R106
    • Anders, S.1    Huber, W.2
  • 4
    • 0029062239 scopus 로고
    • Skeletal muscle metabolism during short duration high-intensity exercise: influence of creatine supplementation
    • Balsom, P.D., Söderlund, K., Sjödin, B., Ekblom, B., Skeletal muscle metabolism during short duration high-intensity exercise: influence of creatine supplementation. Acta Physiol. Scand. 154 (1995), 303–310.
    • (1995) Acta Physiol. Scand. , vol.154 , pp. 303-310
    • Balsom, P.D.1    Söderlund, K.2    Sjödin, B.3    Ekblom, B.4
  • 6
    • 84892788440 scopus 로고    scopus 로고
    • Constraint-based models predict metabolic and associated cellular functions
    • Bordbar, A., Monk, J.M., King, Z.A., Palsson, B.O., Constraint-based models predict metabolic and associated cellular functions. Nat. Rev. Genet. 15 (2014), 107–120.
    • (2014) Nat. Rev. Genet. , vol.15 , pp. 107-120
    • Bordbar, A.1    Monk, J.M.2    King, Z.A.3    Palsson, B.O.4
  • 7
    • 84941879755 scopus 로고    scopus 로고
    • Short-chain fatty acids in control of body weight and insulin sensitivity
    • Canfora, E.E., Jocken, J.W., Blaak, E.E., Short-chain fatty acids in control of body weight and insulin sensitivity. Nat. Rev. Endocrinol. 11 (2015), 577–591.
    • (2015) Nat. Rev. Endocrinol. , vol.11 , pp. 577-591
    • Canfora, E.E.1    Jocken, J.W.2    Blaak, E.E.3
  • 8
    • 0021702388 scopus 로고
    • Is glycosylation in the liver needed for insulin binding, processing, and action? Evidence for heterogeneity
    • Caro, J.F., Cecchin, F., Sinha, M.K., Is glycosylation in the liver needed for insulin binding, processing, and action? Evidence for heterogeneity. J. Biol. Chem. 259 (1984), 12810–12816.
    • (1984) J. Biol. Chem. , vol.259 , pp. 12810-12816
    • Caro, J.F.1    Cecchin, F.2    Sinha, M.K.3
  • 11
    • 0035802224 scopus 로고    scopus 로고
    • Studies of mannose metabolism and effects of long-term mannose ingestion in the mouse
    • Davis, J.A., Freeze, H.H., Studies of mannose metabolism and effects of long-term mannose ingestion in the mouse. Biochim. Biophys. Acta 1528 (2001), 116–126.
    • (2001) Biochim. Biophys. Acta , vol.1528 , pp. 116-126
    • Davis, J.A.1    Freeze, H.H.2
  • 12
    • 77955505357 scopus 로고    scopus 로고
    • Protein-protein interactions essentials: key concepts to building and analyzing interactome networks
    • De Las Rivas, J., Fontanillo, C., Protein-protein interactions essentials: key concepts to building and analyzing interactome networks. PLoS Comput. Biol., 6, 2010, e1000807.
    • (2010) PLoS Comput. Biol. , vol.6 , pp. e1000807
    • De Las Rivas, J.1    Fontanillo, C.2
  • 13
    • 84865790047 scopus 로고    scopus 로고
    • An integrated encyclopedia of DNA elements in the human genome
    • ENCODE Project Consortium. An integrated encyclopedia of DNA elements in the human genome. Nature 489 (2012), 57–74.
    • (2012) Nature , vol.489 , pp. 57-74
  • 17
    • 1842844418 scopus 로고    scopus 로고
    • The EGIR-RISC STUDY (The European group for the study of insulin resistance: relationship between insulin sensitivity and cardiovascular disease risk): I. Methodology and objectives
    • Hills, S.A., Balkau, B., Coppack, S.W., Dekker, J.M., Mari, A., Natali, A., Walker, M., Ferrannini, E., EGIR-RISC Study Group. The EGIR-RISC STUDY (The European group for the study of insulin resistance: relationship between insulin sensitivity and cardiovascular disease risk): I. Methodology and objectives. Diabetologia 47 (2004), 566–570.
    • (2004) Diabetologia , vol.47 , pp. 566-570
    • Hills, S.A.1    Balkau, B.2    Coppack, S.W.3    Dekker, J.M.4    Mari, A.5    Natali, A.6    Walker, M.7    Ferrannini, E.8
  • 21
    • 39049122631 scopus 로고    scopus 로고
    • Insulin sensitivity, insulin release and glucagon-like peptide-1 levels in persons with impaired fasting glucose and/or impaired glucose tolerance in the EUGENE2 study
    • Laakso, M., Zilinskaite, J., Hansen, T., Boesgaard, T.W., Vänttinen, M., Stancáková, A., Jansson, P.A., Pellmé, F., Holst, J.J., Kuulasmaa, T., et al., EUGENE2 Consortium. Insulin sensitivity, insulin release and glucagon-like peptide-1 levels in persons with impaired fasting glucose and/or impaired glucose tolerance in the EUGENE2 study. Diabetologia 51 (2008), 502–511.
    • (2008) Diabetologia , vol.51 , pp. 502-511
    • Laakso, M.1    Zilinskaite, J.2    Hansen, T.3    Boesgaard, T.W.4    Vänttinen, M.5    Stancáková, A.6    Jansson, P.A.7    Pellmé, F.8    Holst, J.J.9    Kuulasmaa, T.10
  • 22
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead, B., Trapnell, C., Pop, M., Salzberg, S.L., Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol., 10, 2009, R25.
    • (2009) Genome Biol. , vol.10 , pp. R25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 23
    • 84921273143 scopus 로고    scopus 로고
    • From pathways to networks: connecting dots by establishing protein-protein interaction networks in signaling pathways using affinity purification and mass spectrometry
    • Li, X., Wang, W., Chen, J., From pathways to networks: connecting dots by establishing protein-protein interaction networks in signaling pathways using affinity purification and mass spectrometry. Proteomics 15 (2015), 188–202.
    • (2015) Proteomics , vol.15 , pp. 188-202
    • Li, X.1    Wang, W.2    Chen, J.3
  • 24
    • 0003939360 scopus 로고
    • Introduction to Bivariate and Multivariate-Analysis
    • The University of Michigan
    • Lindeman, R.H., Merenda, P.F., Gold, R.Z., Introduction to Bivariate and Multivariate-Analysis. 1980, The University of Michigan.
    • (1980)
    • Lindeman, R.H.1    Merenda, P.F.2    Gold, R.Z.3
  • 25
    • 0023873370 scopus 로고
    • Purification, properties, and evidence for two subtypes of human placenta hexokinase type I
    • Magnani, M., Stocchi, V., Serafini, G., Chiarantini, L., Fornaini, G., Purification, properties, and evidence for two subtypes of human placenta hexokinase type I. Arch. Biochem. Biophys. 260 (1988), 388–399.
    • (1988) Arch. Biochem. Biophys. , vol.260 , pp. 388-399
    • Magnani, M.1    Stocchi, V.2    Serafini, G.3    Chiarantini, L.4    Fornaini, G.5
  • 26
    • 84855955467 scopus 로고    scopus 로고
    • Systems medicine and metabolic modelling
    • Mardinoglu, A., Nielsen, J., Systems medicine and metabolic modelling. J. Intern. Med. 271 (2012), 142–154.
    • (2012) J. Intern. Med. , vol.271 , pp. 142-154
    • Mardinoglu, A.1    Nielsen, J.2
  • 27
    • 84920286423 scopus 로고    scopus 로고
    • New paradigms for metabolic modeling of human cells
    • Mardinoglu, A., Nielsen, J., New paradigms for metabolic modeling of human cells. Curr. Opin. Biotechnol. 34 (2015), 91–97.
    • (2015) Curr. Opin. Biotechnol. , vol.34 , pp. 91-97
    • Mardinoglu, A.1    Nielsen, J.2
  • 29
    • 84898011025 scopus 로고    scopus 로고
    • Genome-scale metabolic modelling of hepatocytes reveals serine deficiency in patients with non-alcoholic fatty liver disease
    • Mardinoglu, A., Agren, R., Kampf, C., Asplund, A., Uhlen, M., Nielsen, J., Genome-scale metabolic modelling of hepatocytes reveals serine deficiency in patients with non-alcoholic fatty liver disease. Nat. Commun., 5, 2014, 3083.
    • (2014) Nat. Commun. , vol.5 , pp. 3083
    • Mardinoglu, A.1    Agren, R.2    Kampf, C.3    Asplund, A.4    Uhlen, M.5    Nielsen, J.6
  • 33
    • 0032821965 scopus 로고    scopus 로고
    • Insulin sensitivity indices obtained from oral glucose tolerance testing: comparison with the euglycemic insulin clamp
    • Matsuda, M., DeFronzo, R.A., Insulin sensitivity indices obtained from oral glucose tolerance testing: comparison with the euglycemic insulin clamp. Diabetes Care 22 (1999), 1462–1470.
    • (1999) Diabetes Care , vol.22 , pp. 1462-1470
    • Matsuda, M.1    DeFronzo, R.A.2
  • 37
    • 63449111894 scopus 로고    scopus 로고
    • A branched-chain amino acid-related metabolic signature that differentiates obese and lean humans and contributes to insulin resistance
    • Newgard, C.B., An, J., Bain, J.R., Muehlbauer, M.J., Stevens, R.D., Lien, L.F., Haqq, A.M., Shah, S.H., Arlotto, M., Slentz, C.A., et al. A branched-chain amino acid-related metabolic signature that differentiates obese and lean humans and contributes to insulin resistance. Cell Metab. 9 (2009), 311–326.
    • (2009) Cell Metab. , vol.9 , pp. 311-326
    • Newgard, C.B.1    An, J.2    Bain, J.R.3    Muehlbauer, M.J.4    Stevens, R.D.5    Lien, L.F.6    Haqq, A.M.7    Shah, S.H.8    Arlotto, M.9    Slentz, C.A.10
  • 38
    • 84930227327 scopus 로고    scopus 로고
    • Using genome-scale models to predict biological capabilities
    • O'Brien, E.J., Monk, J.M., Palsson, B.O., Using genome-scale models to predict biological capabilities. Cell 161 (2015), 971–987.
    • (2015) Cell , vol.161 , pp. 971-987
    • O'Brien, E.J.1    Monk, J.M.2    Palsson, B.O.3
  • 40
    • 0029984537 scopus 로고    scopus 로고
    • Mannose corrects altered N-glycosylation in carbohydrate-deficient glycoprotein syndrome fibroblasts
    • Panneerselvam, K., Freeze, H.H., Mannose corrects altered N-glycosylation in carbohydrate-deficient glycoprotein syndrome fibroblasts. J. Clin. Invest. 97 (1996), 1478–1487.
    • (1996) J. Clin. Invest. , vol.97 , pp. 1478-1487
    • Panneerselvam, K.1    Freeze, H.H.2
  • 41
    • 0030760044 scopus 로고    scopus 로고
    • Human fibroblasts prefer mannose over glucose as a source of mannose for N-glycosylation. Evidence for the functional importance of transported mannose
    • Panneerselvam, K., Etchison, J.R., Freeze, H.H., Human fibroblasts prefer mannose over glucose as a source of mannose for N-glycosylation. Evidence for the functional importance of transported mannose. J. Biol. Chem. 272 (1997), 23123–23129.
    • (1997) J. Biol. Chem. , vol.272 , pp. 23123-23129
    • Panneerselvam, K.1    Etchison, J.R.2    Freeze, H.H.3
  • 42
    • 14544268137 scopus 로고    scopus 로고
    • Uncovering transcriptional regulation of metabolism by using metabolic network topology
    • Patil, K.R., Nielsen, J., Uncovering transcriptional regulation of metabolism by using metabolic network topology. Proc. Natl. Acad. Sci. USA 102 (2005), 2685–2689.
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 2685-2689
    • Patil, K.R.1    Nielsen, J.2
  • 43
    • 84921817799 scopus 로고    scopus 로고
    • Phenotypic robustness and the assortativity signature of human transcription factor networks
    • Pechenick, D.A., Payne, J.L., Moore, J.H., Phenotypic robustness and the assortativity signature of human transcription factor networks. PLoS Comput. Biol., 10, 2014, e1003780.
    • (2014) PLoS Comput. Biol. , vol.10 , pp. e1003780
    • Pechenick, D.A.1    Payne, J.L.2    Moore, J.H.3
  • 45
    • 0035141466 scopus 로고    scopus 로고
    • Leukotriene C(4) enhances the contraction of porcine tracheal smooth muscle through the activation of Y-27632, a rho kinase inhibitor, sensitive pathway
    • Setoguchi, H., Nishimura, J., Hirano, K., Takahashi, S., Kanaide, H., Leukotriene C(4) enhances the contraction of porcine tracheal smooth muscle through the activation of Y-27632, a rho kinase inhibitor, sensitive pathway. Br. J. Pharmacol. 132 (2001), 111–118.
    • (2001) Br. J. Pharmacol. , vol.132 , pp. 111-118
    • Setoguchi, H.1    Nishimura, J.2    Hirano, K.3    Takahashi, S.4    Kanaide, H.5
  • 49
    • 65549163338 scopus 로고    scopus 로고
    • Changes in insulin sensitivity and insulin release in relation to glycemia and glucose tolerance in 6,414 Finnish men
    • Stancáková, A., Javorský, M., Kuulasmaa, T., Haffner, S.M., Kuusisto, J., Laakso, M., Changes in insulin sensitivity and insulin release in relation to glycemia and glucose tolerance in 6,414 Finnish men. Diabetes 58 (2009), 1212–1221.
    • (2009) Diabetes , vol.58 , pp. 1212-1221
    • Stancáková, A.1    Javorský, M.2    Kuulasmaa, T.3    Haffner, S.M.4    Kuusisto, J.5    Laakso, M.6
  • 51
    • 0024312193 scopus 로고
    • Regulation of the biosynthesis of triacylglycerol, phosphatidylcholine and phosphatidylethanolamine in the liver
    • Tijburg, L.B., Geelen, M.J., van Golde, L.M., Regulation of the biosynthesis of triacylglycerol, phosphatidylcholine and phosphatidylethanolamine in the liver. Biochim. Biophys. Acta 1004 (1989), 1–19.
    • (1989) Biochim. Biophys. Acta , vol.1004 , pp. 1-19
    • Tijburg, L.B.1    Geelen, M.J.2    van Golde, L.M.3
  • 54
    • 84929276343 scopus 로고    scopus 로고
    • Proteome- and transcriptome-driven reconstruction of the human myocyte metabolic network and its use for identification of markers for diabetes
    • Väremo, L., Scheele, C., Broholm, C., Mardinoglu, A., Kampf, C., Asplund, A., Nookaew, I., Uhlén, M., Pedersen, B.K., Nielsen, J., Proteome- and transcriptome-driven reconstruction of the human myocyte metabolic network and its use for identification of markers for diabetes. Cell Rep. 11 (2015), 921–933.
    • (2015) Cell Rep. , vol.11 , pp. 921-933
    • Väremo, L.1    Scheele, C.2    Broholm, C.3    Mardinoglu, A.4    Kampf, C.5    Asplund, A.6    Nookaew, I.7    Uhlén, M.8    Pedersen, B.K.9    Nielsen, J.10
  • 55
    • 0029653395 scopus 로고
    • Human beta-cell glucokinase. Dual role of Ser-151 in catalysis and hexose affinity
    • Xu, L.Z., Harrison, R.W., Weber, I.T., Pilkis, S.J., Human beta-cell glucokinase. Dual role of Ser-151 in catalysis and hexose affinity. J. Biol. Chem. 270 (1995), 9939–9946.
    • (1995) J. Biol. Chem. , vol.270 , pp. 9939-9946
    • Xu, L.Z.1    Harrison, R.W.2    Weber, I.T.3    Pilkis, S.J.4
  • 56
    • 84886670153 scopus 로고    scopus 로고
    • Model-based identification of drug targets that revert disrupted metabolism and its application to ageing
    • Yizhak, K., Gabay, O., Cohen, H., Ruppin, E., Model-based identification of drug targets that revert disrupted metabolism and its application to ageing. Nat. Commun., 4, 2013, 2632.
    • (2013) Nat. Commun. , vol.4 , pp. 2632
    • Yizhak, K.1    Gabay, O.2    Cohen, H.3    Ruppin, E.4
  • 59
    • 84941656865 scopus 로고    scopus 로고
    • Logical transformation of genome-scale metabolic models for gene level applications and analysis
    • Zhang, C., Ji, B., Mardinoglu, A., Nielsen, J., Hua, Q., Logical transformation of genome-scale metabolic models for gene level applications and analysis. Bioinformatics 31 (2015), 2324–2331.
    • (2015) Bioinformatics , vol.31 , pp. 2324-2331
    • Zhang, C.1    Ji, B.2    Mardinoglu, A.3    Nielsen, J.4    Hua, Q.5


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