-
1
-
-
84870674137
-
Engineering the push and pull of lipid biosynthesis in oleaginous yeast Yarrowia lipolytica for biofuel production
-
Epub 2012/10/03. PMID: 23026119
-
Tai M, Stephanopoulos G. Engineering the push and pull of lipid biosynthesis in oleaginous yeast Yarrowia lipolytica for biofuel production. Metabolic engineering. 2013; 15:1-9. Epub 2012/10/03. doi: 10. 1016/j.ymben.2012.08.007 PMID: 23026119.
-
(2013)
Metabolic engineering
, vol.15
, pp. 1-9
-
-
Tai, M.1
Stephanopoulos, G.2
-
2
-
-
84867632249
-
Yarrowia lipolytica
-
Epub 2012/10/06. PMID: 23038056
-
Nicaud JM. Yarrowia lipolytica. Yeast. 2012; 29(10):409-18. Epub 2012/10/06. doi: 10.1002/yea.2921 PMID: 23038056.
-
(2012)
Yeast
, vol.29
, Issue.10
, pp. 409-418
-
-
Nicaud, J.M.1
-
3
-
-
84940100557
-
Metabolic engineering of Yarrowia lipolytica for industrial applications
-
Epub 2015/09/01. PMID: 26319895
-
Zhu Q, Jackson EN. Metabolic engineering of Yarrowia lipolytica for industrial applications. Curr Opin Biotechnol. 2015; 36:65-72. Epub 2015/09/01. doi: 10.1016/j.copbio.2015.08.010 PMID: 26319895.
-
(2015)
Curr Opin Biotechnol
, vol.36
, pp. 65-72
-
-
Zhu, Q.1
Jackson, E.N.2
-
4
-
-
84929378123
-
Comprehensive Metabolomic, Lipidomic and Microscopic Profiling of Yarrowia lipolytica during Lipid Accumulation Identifies Targets for Increased Lipogenesis
-
Epub 2015/04/24. PMID: 25905710; PubMed Central PMCID: PMC4408067
-
Pomraning KR, Wei S, Karagiosis SA, Kim YM, Dohnalkova AC, Arey BW, et al. Comprehensive Metabolomic, Lipidomic and Microscopic Profiling of Yarrowia lipolytica during Lipid Accumulation Identifies Targets for Increased Lipogenesis. PLoS One. 2015; 10(4):e0123188. Epub 2015/04/24. doi: 10.1371/ journal.pone.0123188 PMID: 25905710; PubMed Central PMCID: PMC4408067.
-
(2015)
PLoS One
, vol.10
, Issue.4
, pp. e0123188
-
-
Pomraning, K.R.1
Wei, S.2
Karagiosis, S.A.3
Kim, Y.M.4
Dohnalkova, A.C.5
Arey, B.W.6
-
6
-
-
84925494179
-
Metabolic engineering of strains: From industrial-scale to lab-scale chemical production
-
Epub 2014/11/22
-
Sun J, Alper HS. Metabolic engineering of strains: from industrial-scale to lab-scale chemical production. Journal of industrial microbiology & biotechnology. 2015; 42(3):423-36. Epub 2014/11/22. doi: 10. 1007/s10295-014-1539-8
-
(2015)
Journal of industrial microbiology & biotechnology
, vol.42
, Issue.3
, pp. 423-436
-
-
Sun, J.1
Alper, H.S.2
-
7
-
-
3042720475
-
Genome evolution in yeasts
-
Epub 2004/07/02. PMID: 15229592
-
Dujon B, Sherman D, Fischer G, Durrens P, Casaregola S, Lafontaine I, et al. Genome evolution in yeasts. Nature. 2004; 430(6995):35-44. Epub 2004/07/02. doi: 10.1038/nature02579 PMID: 15229592
-
(2004)
Nature
, vol.430
, Issue.6995
, pp. 35-44
-
-
Dujon, B.1
Sherman, D.2
Fischer, G.3
Durrens, P.4
Casaregola, S.5
Lafontaine, I.6
-
9
-
-
15244339972
-
Mutator-like element in the yeast Yarrowia lipolytica displays multiple alternative splicings
-
Epub 2005/03/ 10. PMID: 15755923; PubMed Central PMCID: PMC1087794
-
Neuveglise C, Chalvet F, Wincker P, Gaillardin C, Casaregola S. Mutator-like element in the yeast Yarrowia lipolytica displays multiple alternative splicings. Eukaryot Cell. 2005; 4(3):615-24. Epub 2005/03/ 10. doi: 10.1128/EC.4.3.615-624.2005 PMID: 15755923; PubMed Central PMCID: PMC1087794.
-
(2005)
Eukaryot Cell
, vol.4
, Issue.3
, pp. 615-624
-
-
Neuveglise, C.1
Chalvet, F.2
Wincker, P.3
Gaillardin, C.4
Casaregola, S.5
-
10
-
-
0036076073
-
Genomic evolution of the long terminal repeat retrotransposons in hemiascomycetous yeasts
-
Epub 2002/ 06/05. PMID: 12045146; PubMed Central PMCID: PMC1383729
-
Neuveglise C, Feldmann H, Bon E, Gaillardin C, Casaregola S. Genomic evolution of the long terminal repeat retrotransposons in hemiascomycetous yeasts. Genome Res. 2002; 12(6):930-43. Epub 2002/ 06/05. doi: 10.1101/gr.219202 PMID: 12045146; PubMed Central PMCID: PMC1383729.
-
(2002)
Genome Res
, vol.12
, Issue.6
, pp. 930-943
-
-
Neuveglise, C.1
Feldmann, H.2
Bon, E.3
Gaillardin, C.4
Casaregola, S.5
-
11
-
-
0036092320
-
Ylli, a non-LTR retrotransposon L1 family in the dimorphic yeast Yarrowia lipolytica
-
Epub 2002/ 04/19. PMID: 11961100
-
Casaregola S, Neuveglise C, Bon E, Gaillardin C. Ylli, a non-LTR retrotransposon L1 family in the dimorphic yeast Yarrowia lipolytica. Molecular biology and evolution. 2002; 19(5):664-77. Epub 2002/ 04/19. PMID: 11961100.
-
(2002)
Molecular biology and evolution
, vol.19
, Issue.5
, pp. 664-677
-
-
Casaregola, S.1
Neuveglise, C.2
Bon, E.3
Gaillardin, C.4
-
13
-
-
84892840633
-
Harnessing Yarrowia lipolytica lipogenesis to create a platform for lipid and biofuel production
-
Epub 2014/01/22. PMID: 24445655
-
Blazeck J, Hill A, Liu L, Knight R, Miller J, Pan A, et al. Harnessing Yarrowia lipolytica lipogenesis to create a platform for lipid and biofuel production. Nature communications. 2014; 5:3131. Epub 2014/01/22. doi: 10.1038/ncomms4131 PMID: 24445655.
-
(2014)
Nature communications
, vol.5
, pp. 3131
-
-
Blazeck, J.1
Hill, A.2
Liu, L.3
Knight, R.4
Miller, J.5
Pan, A.6
-
14
-
-
79955560245
-
An overview of lipid metabolism in yeasts and its impact on biotechnological processes
-
Epub 2011/ 04/01. PMID: 21452033
-
Beopoulos A, Nicaud JM, Gaillardin C. An overview of lipid metabolism in yeasts and its impact on biotechnological processes. Applied microbiology and biotechnology. 2011; 90(4):1193-206. Epub 2011/ 04/01. doi: 10.1007/s00253-011-3212-8 PMID: 21452033.
-
(2011)
Applied microbiology and biotechnology
, vol.90
, Issue.4
, pp. 1193-1206
-
-
Beopoulos, A.1
Nicaud, J.M.2
Gaillardin, C.3
-
15
-
-
0000837748
-
-
Wolf K, editor. Non-conventional yeasts in biotechnology A handbook. Heidelberg: Springer
-
Barth G, Gaillardin C. Yarrowia lipolytica. In: Wolf K, editor. Non-conventional yeasts in biotechnology A handbook. Heidelberg: Springer; 1996. p. 313-88.
-
(1996)
Yarrowia Lipolytica
, pp. 313-388
-
-
Barth, G.1
Gaillardin, C.2
-
17
-
-
0036052123
-
Protein expression and secretion in the yeast Yarrowia lipolytica
-
Epub 2003/04/19. PMID: 12702287
-
Nicaud JM, Madzak C, van den Broek P, Gysler C, Duboc P, Niederberger P, et al. Protein expression and secretion in the yeast Yarrowia lipolytica. FEMS yeast research. 2002; 2(3):371-9. Epub 2003/04/ 19. PMID: 12702287.
-
(2002)
FEMS Yeast Research
, vol.2
, Issue.3
, pp. 371-379
-
-
Nicaud, J.M.1
Madzak, C.2
Van Den Broek, P.3
Gysler, C.4
Duboc, P.5
Niederberger, P.6
-
18
-
-
84891866157
-
Metabolic engineering for ricinoleic acid production in the oleaginous yeast Yarrowia lipolytica
-
Epub 2013/10/19. PMID: 24136468
-
Beopoulos A, Verbeke J, Bordes F, Guicherd M, Bressy M, Marty A, et al. Metabolic engineering for ricinoleic acid production in the oleaginous yeast Yarrowia lipolytica. Applied microbiology and biotechnology. 2014; 98(1):251-62. Epub 2013/10/19. doi: 10.1007/s00253-013-5295-x PMID: 24136468.
-
(2014)
Applied microbiology and biotechnology
, vol.98
, Issue.1
, pp. 251-262
-
-
Beopoulos, A.1
Verbeke, J.2
Bordes, F.3
Guicherd, M.4
Bressy, M.5
Marty, A.6
-
19
-
-
85003638105
-
Draft Genome Sequence of the Oleaginous Yeast Yarrowia lipolytica PO1f, a Commonly Used Metabolic Engineering Host
-
Epub 2014/07/06. PMID: 24994799; PubMed Central PMCID: PMC4081999
-
Liu L, Alper HS. Draft Genome Sequence of the Oleaginous Yeast Yarrowia lipolytica PO1f, a Commonly Used Metabolic Engineering Host. Genome announcements. 2014; 2(4). Epub 2014/07/06. doi: 10.1128/genomeA.00652-14 PMID: 24994799; PubMed Central PMCID: PMC4081999.
-
(2014)
Genome announcements
, vol.2
, Issue.4
-
-
Liu, L.1
Alper, H.S.2
-
20
-
-
85009461393
-
Draft Genome Sequence of the Dimorphic Yeast Yarrowia lipolytica Strain W29
-
Epub 2015/11/27. PMID: 26607882; PubMed Central PMCID: PMC4661301
-
Pomraning KR, Baker SE. Draft Genome Sequence of the Dimorphic Yeast Yarrowia lipolytica Strain W29. Genome announcements. 2015; 3(6). Epub 2015/11/27. doi: 10.1128/genomeA.01211-15 PMID: 26607882; PubMed Central PMCID: PMC4661301.
-
(2015)
Genome announcements
, vol.3
, Issue.6
-
-
Pomraning, K.R.1
Baker, S.E.2
-
21
-
-
84866172351
-
A pipeline for automated annotation of yeast genome sequences by a conserved-synteny approach
-
Epub 2012/09/19. PMID: 22984983; PubMed Central PMCID: PMC3507789
-
Proux-Wera E, Armisen D, Byrne KP, Wolfe KH. A pipeline for automated annotation of yeast genome sequences by a conserved-synteny approach. BMC Bioinformatics. 2012; 13:237. Epub 2012/09/19. doi: 10.1186/1471-2105-13-237 PMID: 22984983; PubMed Central PMCID: PMC3507789.
-
(2012)
BMC Bioinformatics
, vol.13
, pp. 237
-
-
Proux-Wera, E.1
Armisen, D.2
Byrne, K.P.3
Wolfe, K.H.4
-
22
-
-
84903401892
-
SnowyOwl: Accurate prediction of fungal genes by using RNA-Seq and homology information to select among ab initio models
-
Epub 2014/07/02. PMID: 24980894; PubMed Central PMCID: PMC4084796
-
Reid I, O'Toole N, Zabaneh O, Nourzadeh R, Dahdouli M, Abdellateef M, et al. SnowyOwl: accurate prediction of fungal genes by using RNA-Seq and homology information to select among ab initio models. BMC Bioinformatics. 2014; 15:229. Epub 2014/07/02. doi: 10.1186/1471-2105-15-229 PMID: 24980894; PubMed Central PMCID: PMC4084796.
-
(2014)
BMC Bioinformatics
, vol.15
, pp. 229
-
-
Reid, I.1
O'Toole, N.2
Zabaneh, O.3
Nourzadeh, R.4
Dahdouli, M.5
Abdellateef, M.6
-
23
-
-
24044447664
-
Automated generation of heuristics for biological sequence comparison
-
Epub 2005/02/17. PMID: 15713233; PubMed Central PMCID: PMC553969
-
Slater GS, Birney E. Automated generation of heuristics for biological sequence comparison. BMC Bioinformatics. 2005; 6:31. Epub 2005/02/17. doi: 10.1186/1471-2105-6-31 PMID: 15713233; PubMed Central PMCID: PMC553969.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 31
-
-
Slater, G.S.1
Birney, E.2
-
24
-
-
25844471721
-
The Yeast Gene Order Browser: Ccombining curated homology and syntenic context reveals gene fate in polyploid species
-
Epub 2005/09/20. PMID: 16169922; PubMed Central PMCID: PMC1240090
-
Byrne KP, Wolfe KH. The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species. Genome Res. 2005; 15(10):1456-61. Epub 2005/09/20. doi: 10.1101/gr.3672305 PMID: 16169922; PubMed Central PMCID: PMC1240090.
-
(2005)
Genome Res
, vol.15
, Issue.10
, pp. 1456-1461
-
-
Byrne, K.P.1
Wolfe, K.H.2
-
25
-
-
17644382944
-
A systematic nomenclature of chromosomal elements for hemiascomycete yeasts
-
Epub 2005/04/05. PMID: 15806614
-
Durrens P, Sherman DJ. A systematic nomenclature of chromosomal elements for hemiascomycete yeasts. Yeast. 2005; 22(5):337-42. Epub 2005/04/05. doi: 10.1002/yea.1214 PMID: 15806614.
-
(2005)
Yeast
, vol.22
, Issue.5
, pp. 337-342
-
-
Durrens, P.1
Sherman, D.J.2
-
26
-
-
0342813021
-
Genomic organization of the yeast Yarrowia lipolytica
-
Epub 1998/01/10. PMID: 9362546
-
Casaregola S, Feynerol C, Diez M, Fournier P, Gaillardin C. Genomic organization of the yeast Yarrowia lipolytica. Chromosoma. 1997; 106(6):380-90. Epub 1998/01/10. PMID: 9362546.
-
(1997)
Chromosoma
, vol.106
, Issue.6
, pp. 380-390
-
-
Casaregola, S.1
Feynerol, C.2
Diez, M.3
Fournier, P.4
Gaillardin, C.5
-
27
-
-
0022383957
-
Heterogeneity in the ribosomal RNA genes of the yeast Yarrowia lipolytica; cloning and analysis of two size classes of repeats
-
Epub 1985/01/01. PMID: 4092930
-
van Heerikhuizen H, Ykema A, Klootwijk J, Gaillardin C, Ballas C, Fournier P. Heterogeneity in the ribosomal RNA genes of the yeast Yarrowia lipolytica; cloning and analysis of two size classes of repeats. Gene. 1985; 39(2-3):213-22. Epub 1985/01/01. PMID: 4092930.
-
(1985)
Gene
, vol.39
, Issue.2-3
, pp. 213-222
-
-
Van Heerikhuizen, H.1
Ykema, A.2
Klootwijk, J.3
Gaillardin, C.4
Ballas, C.5
Fournier, P.6
-
29
-
-
54549086798
-
Dicistronic tRNA-5S rRNA genes in Yarrowia lipolytica: An alternative TFIIIA-independent way for expression of 5S rRNA genes
-
Epub 2008/09/16. PMID: 18790808; PubMed Central PMCID: PMC2566860
-
Acker J, Ozanne C, Kachouri-Lafond R, Gaillardin C, Neuveglise C, Marck C. Dicistronic tRNA-5S rRNA genes in Yarrowia lipolytica: an alternative TFIIIA-independent way for expression of 5S rRNA genes. Nucleic Acids Res. 2008; 36(18):5832-44. Epub 2008/09/16. doi: 10.1093/nar/gkn549 PMID: 18790808; PubMed Central PMCID: PMC2566860.
-
(2008)
Nucleic Acids Res
, vol.36
, Issue.18
, pp. 5832-5844
-
-
Acker, J.1
Ozanne, C.2
Kachouri-Lafond, R.3
Gaillardin, C.4
Neuveglise, C.5
Marck, C.6
-
30
-
-
33645895581
-
Polymerase IIIdependent family of genes in hemiascomycetes: Comparative RNomics, decoding strategies, transcription and evolutionary implications
-
Epub 2006/04/08 34/6/1816 PMID: 16600899
-
Marck C, Kachouri-Lafond R, Lafontaine I, Westhof E, Dujon B, Grosjean H. The RNA polymerase IIIdependent family of genes in hemiascomycetes: comparative RNomics, decoding strategies, transcription and evolutionary implications. Nucleic Acids Res. 2006; 34(6):1816-35. Epub 2006/04/08. 34/6/ 1816 [pii]doi: 10.1093/nar/gkl085 PMID: 16600899.
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.6
, pp. 1816-1835
-
-
Marck, C.1
Kachouri-Lafond, R.2
Lafontaine, I.3
Westhof, E.4
Dujon, B.5
Grosjean, H.6
The, R.N.A.7
-
31
-
-
0022847331
-
Cloning and characterisation of the ribosomal RNA genes of the dimorphic yeast, Yarrowia lipolytica
-
Epub 1986/01/01. PMID: 2832073
-
Clare JJ, Davidow LS, Gardner DC, Oliver SG. Cloning and characterisation of the ribosomal RNA genes of the dimorphic yeast, Yarrowia lipolytica. Curr Genet. 1986; 10(6):449-52. Epub 1986/01/01. PMID: 2832073.
-
(1986)
Curr Genet
, vol.10
, Issue.6
, pp. 449-452
-
-
Clare, J.J.1
Davidow, L.S.2
Gardner, D.C.3
Oliver, S.G.4
-
32
-
-
0034704310
-
Genomic exploration of the hemiascomycetous yeasts: 1. A set of yeast species for molecular evolution studies
-
Epub 2001/01/12. PMID: 11152876
-
Souciet J, Aigle M, Artiguenave F, Blandin G, Bolotin-Fukuhara M, Bon E, et al. Genomic exploration of the hemiascomycetous yeasts: 1. A set of yeast species for molecular evolution studies. FEBS Lett. 2000; 487(1):3-12. Epub 2001/01/12. PMID: 11152876.
-
(2000)
FEBS Lett
, vol.487
, Issue.1
, pp. 3-12
-
-
Souciet, J.1
Aigle, M.2
Artiguenave, F.3
Blandin, G.4
Bolotin-Fukuhara, M.5
Bon, E.6
-
33
-
-
84891588399
-
Increased homologous integration frequency in Yarrowia lipolytica strains defective in non-homologous end-joining
-
Epub 2013/02/21. PMID: 23423527
-
Kretzschmar A, Otto C, Holz M, Werner S, Hubner L, Barth G. Increased homologous integration frequency in Yarrowia lipolytica strains defective in non-homologous end-joining. Curr Genet. 2013; 59(1-2):63-72. Epub 2013/02/21. doi: 10.1007/s00294-013-0389-7 PMID: 23423527.
-
(2013)
Curr Genet
, vol.59
, Issue.1-2
, pp. 63-72
-
-
Kretzschmar, A.1
Otto, C.2
Holz, M.3
Werner, S.4
Hubner, L.5
Barth, G.6
-
34
-
-
0024310727
-
Expression of invertase activity in Yarrowia lipolytica and its use as a selective marker
-
Epub 1989/10/01. PMID: 2627713
-
Nicaud JM, Fabre E, Gaillardin C. Expression of invertase activity in Yarrowia lipolytica and its use as a selective marker. Curr Genet. 1989; 16(4):253-60. Epub 1989/10/01. PMID: 2627713.
-
(1989)
Curr Genet
, vol.16
, Issue.4
, pp. 253-260
-
-
Nicaud, J.M.1
Fabre, E.2
Gaillardin, C.3
-
36
-
-
85103344918
-
-
Craig N, Chandler M, Gellert M, Lambowitz A, Rice P, Sandmeyer S, editors. Mobile DNA III. Washington DC: ASM Press
-
Craig N. A moveable feast: an introduction to mobile DNA. In: Craig N, Chandler M, Gellert M, Lambowitz A, Rice P, Sandmeyer S, editors. Mobile DNA III. Washington DC: ASM Press; 2015. p. 3-39.
-
(2015)
A Moveable Feast: An Introduction to Mobile DNA
, pp. 3-39
-
-
Craig, N.1
-
37
-
-
0017842732
-
Characterization of the mutator system in maize
-
Robertson DS. Characterization of the Mutator System in Maize. Mutat Res. 1978; 51:21-8.
-
(1978)
Mutat Res
, vol.51
, pp. 21-28
-
-
Robertson, D.S.1
-
38
-
-
0036833565
-
Mutator transposons
-
Epub 2002/11/06. PMID: 12417150
-
Lisch D. Mutator transposons. Trends Plant Sci. 2002; 7(11):498-504. Epub 2002/11/06. PMID: 12417150.
-
(2002)
Trends Plant Sci
, vol.7
, Issue.11
, pp. 498-504
-
-
Lisch, D.1
-
39
-
-
0041571669
-
Hop, an active Mutator-like element in the genome of the fungus Fusarium oxysporum
-
Epub 2003/06/05. PMID: 12777515
-
Chalvet F, Grimaldi C, Kaper F, Langin T, Daboussi MJ. Hop, an active Mutator-like element in the genome of the fungus Fusarium oxysporum. Molecular biology and evolution. 2003; 20(8):1362-75. Epub 2003/06/05. doi: 10.1093/molbev/msg155 PMID: 12777515.
-
(2003)
Molecular biology and evolution
, vol.20
, Issue.8
, pp. 1362-1375
-
-
Chalvet, F.1
Grimaldi, C.2
Kaper, F.3
Langin, T.4
Daboussi, M.J.5
-
40
-
-
0026516965
-
Fot1, a new family of fungal transposable elements
-
Epub 1992/03/01. PMID: 1313143
-
Daboussi MJ, Langin T, Brygoo Y. Fot1, a new family of fungal transposable elements. Mol Gen Genet. 1992; 232(1):12-6. Epub 1992/03/01. PMID: 1313143.
-
(1992)
Mol Gen Genet
, vol.232
, Issue.1
, pp. 12-16
-
-
Daboussi, M.J.1
Langin, T.2
Brygoo, Y.3
-
41
-
-
0141468761
-
Transposable elements in filamentous fungi
-
Epub 2003/10/07. PMID: 14527280
-
Daboussi MJ, Capy P. Transposable elements in filamentous fungi. Annu Rev Microbiol. 2003; 57:275-99. Epub 2003/10/07. doi: 10.1146/annurev.micro.57.030502.091029 PMID: 14527280.
-
(2003)
Annu Rev Microbiol
, vol.57
, pp. 275-299
-
-
Daboussi, M.J.1
Capy, P.2
-
42
-
-
84943541683
-
Ty3, a Position-specific Retrotransposon in Budding Yeast
-
Epub 2015/06/25. PMID: 26104707
-
Sandmeyer S, Patterson K, Bilanchone V. Ty3, a Position-specific Retrotransposon in Budding Yeast. Microbiol Spectr. 2015; 3(2). Epub 2015/06/25. doi: 10.1128/microbiolspec.MDNA3-0057-2014 PMID: 26104707.
-
(2015)
Microbiol Spectr
, vol.3
, Issue.2
-
-
Sandmeyer, S.1
Patterson, K.2
Bilanchone, V.3
-
43
-
-
78751658378
-
An everlasting war dance between retrotransposons and their metazoan hosts
-
Kurth R, Bannert N, editors. Norfolk, UK: Caister Academic Press
-
Symer DE, Boeke JD. An everlasting war dance between retrotransposons and their metazoan hosts. In: Kurth R, Bannert N, editors. Retroviruses. Norfolk, UK: Caister Academic Press; 2010. p. 1-34.
-
(2010)
Retroviruses.
, pp. 1-34
-
-
Symer, D.E.1
Boeke, J.D.2
-
44
-
-
0028284967
-
Ylt1, a highly repetitive retrotransposon in the genome of the dimorphic fungus Yarrowia lipolytica
-
Epub 1994/05/01. PMID: 8169196; PubMed Central PMCID: PMC205382
-
Schmid-Berger N, Schmid B, Barth G. Ylt1, a highly repetitive retrotransposon in the genome of the dimorphic fungus Yarrowia lipolytica. J Bacteriol. 1994; 176(9):2477-82. Epub 1994/05/01. PMID: 8169196; PubMed Central PMCID: PMC205382.
-
(1994)
J Bacteriol
, vol.176
, Issue.9
, pp. 2477-2482
-
-
Schmid-Berger, N.1
Schmid, B.2
Barth, G.3
-
45
-
-
25844527243
-
Tyl6, a novel Ty3/gypsy-like retrotransposon in the genome of the dimorphic fungus Yarrowia lipolytica
-
Epub 2005/09/01. PMID: 16134118
-
Kovalchuk A, Senam S, Mauersberger S, Barth G. Tyl6, a novel Ty3/gypsy-like retrotransposon in the genome of the dimorphic fungus Yarrowia lipolytica. Yeast. 2005; 22(12):979-91. Epub 2005/09/01. doi: 10.1002/yea.1287 PMID: 16134118.
-
(2005)
Yeast
, vol.22
, Issue.12
, pp. 979-991
-
-
Kovalchuk, A.1
Senam, S.2
Mauersberger, S.3
Barth, G.4
-
46
-
-
0034704311
-
Genomic exploration of the hemiascomycetous yeasts: 17. Yarrowia lipolytica
-
Epub 2001/ 01/12. PMID: 11152892
-
Casaregola S, Neuveglise C, Lepingle A, Bon E, Feynerol C, Artiguenave F, et al. Genomic exploration of the hemiascomycetous yeasts: 17. Yarrowia lipolytica. FEBS Lett. 2000; 487(1):95-100. Epub 2001/ 01/12. PMID: 11152892.
-
(2000)
FEBS Lett.
, vol.487
, Issue.1
, pp. 95-100
-
-
Casaregola, S.1
Neuveglise, C.2
Lepingle, A.3
Bon, E.4
Feynerol, C.5
Artiguenave, F.6
-
47
-
-
0032541322
-
The yeast Ty3 retrotransposon contains a 5'-3' bipartite primer-binding site and encodes nucleocapsid protein NCp9 functionally homologous to HIV-1 NCp7
-
Epub 1998/08/26. PMID: 9707446; PubMed Central PMCID: PMCPMC1170816
-
Gabus C, Ficheux D, Rau M, Keith G, Sandmeyer S, Darlix JL. The yeast Ty3 retrotransposon contains a 5'-3' bipartite primer-binding site and encodes nucleocapsid protein NCp9 functionally homologous to HIV-1 NCp7. EMBO J. 1998; 17(16):4873-80. Epub 1998/08/26. doi: 10.1093/emboj/17.16.4873 PMID: 9707446; PubMed Central PMCID: PMCPMC1170816.
-
(1998)
EMBO J
, vol.17
, Issue.16
, pp. 4873-4880
-
-
Gabus, C.1
Ficheux, D.2
Rau, M.3
Keith, G.4
Sandmeyer, S.5
Darlix, J.L.6
-
48
-
-
0035476521
-
An active retrotransposon in Candida albicans
-
Epub 2001/09/28. PMID: 11574684; PubMed Central PMCID: PMC60234
-
Holton NJ, Goodwin TJ, Butler MI, Poulter RT. An active retrotransposon in Candida albicans. Nucleic Acids Res. 2001; 29(19):4014-24. Epub 2001/09/28. PMID: 11574684; PubMed Central PMCID: PMC60234.
-
(2001)
Nucleic Acids Res
, vol.29
, Issue.19
, pp. 4014-4024
-
-
Holton, N.J.1
Goodwin, T.J.2
Butler, M.I.3
Poulter, R.T.4
-
49
-
-
38049112901
-
Control of gag-pol gene expression in the Candida albicans retrotransposon Tca2
-
Epub 2007/10/27. PMID: 17961216; PubMed Central PMCID: PMC2194720
-
Forbes EM, Nieduszynska SR, Brunton FK, Gibson J, Glover LA, Stansfield I. Control of gag-pol gene expression in the Candida albicans retrotransposon Tca2. BMC molecular biology. 2007; 8:94. Epub 2007/10/27. doi: 10.1186/1471-2199-8-94 PMID: 17961216; PubMed Central PMCID: PMC2194720.
-
(2007)
BMC molecular biology
, vol.8
, pp. 94
-
-
Forbes, E.M.1
Nieduszynska, S.R.2
Brunton, F.K.3
Gibson, J.4
Glover, L.A.5
Stansfield, I.6
-
50
-
-
81255160914
-
Viral subversion of the host protein synthesis machinery
-
Epub 2011/10/18. PMID: 22002165
-
Walsh D, Mohr I. Viral subversion of the host protein synthesis machinery. Nat Rev Microbiol. 2011; 9 (12):860-75. Epub 2011/10/18. doi: 10.1038/nrmicro2655 PMID: 22002165.
-
(2011)
Nat Rev Microbiol
, vol.9
, Issue.12
, pp. 860-875
-
-
Walsh, D.1
Mohr, I.2
-
51
-
-
0029869049
-
Human foamy virus replication: A pathway distinct from that of retroviruses and hepadnaviruses
-
Epub 1996/03/ 15. PMID: 8599113
-
Yu SF, Baldwin DN, Gwynn SR, Yendapalli S, Linial ML. Human foamy virus replication: a pathway distinct from that of retroviruses and hepadnaviruses. Science. 1996; 271(5255):1579-82. Epub 1996/03/ 15. PMID: 8599113.
-
(1996)
Science
, vol.271
, Issue.5255
, pp. 1579-1582
-
-
Yu, S.F.1
Baldwin, D.N.2
Gwynn, S.R.3
Yendapalli, S.4
Linial, M.L.5
-
52
-
-
84892380471
-
Viral IRESprediction system-A web server for prediction of the IRES secondary structure in silico
-
Epub 2013/11/14. PMID: 24223923; PubMed Central PMCID: PMC3818432
-
Hong JJ, Wu TY, Chang TY, Chen CY. Viral IRES prediction system-a web server for prediction of the IRES secondary structure in silico. PLoS One. 2013; 8(11):e79288. Epub 2013/11/14. doi: 10.1371/ journal.pone.0079288 PMID: 24223923; PubMed Central PMCID: PMC3818432.
-
(2013)
PLoS One
, vol.8
, Issue.11
, pp. e79288
-
-
Hong, J.J.1
Wu, T.Y.2
Chang, T.Y.3
Chen, C.Y.4
-
53
-
-
0000093674
-
-
Salzberg S, Searls D, Kasif S, editorsComputational Methods in Molecular Biology. Amsterdam: Elsevier Science
-
Burge CB. Modeling dependencies in pre-mRNA splicing signals. In: Salzberg S, Searls D, Kasif S, editors. Computational Methods in Molecular Biology. Amsterdam: Elsevier Science; 1998. p. 127-63.
-
(1998)
Modeling Dependencies in Pre-mRNA Splicing Signals
, pp. 127-163
-
-
Burge, C.B.1
-
54
-
-
0033057257
-
Modular evolution of the integrase domain in the Ty3/Gypsy class of LTR retrotransposons
-
Epub 1999/05/11. PMID: 10233986
-
Malik HS, Eickbush TH. Modular evolution of the integrase domain in the Ty3/Gypsy class of LTR retrotransposons. J Virol. 1999; 73(6):5186-90. Epub 1999/05/11. PMID: 10233986.
-
(1999)
J Virol
, vol.73
, Issue.6
, pp. 5186-5190
-
-
Malik, H.S.1
Eickbush, T.H.2
-
55
-
-
84959063951
-
The Ty1 LTR-Retrotransposon of Budding Yeast, Saccharomyces cerevisiae
-
PMID: 26104690. MDNA3-0053-2014 Epub 2015/06/25
-
Curcio MJ, Lutz S, Lesage P. The Ty1 LTR-Retrotransposon of Budding Yeast, Saccharomyces cerevisiae. Microbiol Spectr. 2015; 3(2):MDNA3-0053-2014. Epub 2015/06/25. doi: 10.1128/microbiolspec. MDNA3-0053-2014 PMID: 26104690.
-
(2015)
Microbiol Spectr
, vol.3
, Issue.2
, pp. 26104690
-
-
Curcio, M.J.1
Lutz, S.2
Lesage, P.3
-
56
-
-
0023724838
-
Ty3, a yeast retrotransposon associated with tRNA genes, has homology to animal retroviruses
-
Epub 1988/12/01. PMID: 2854194; PubMed Central PMCID: PMCPMC365627
-
Hansen LJ, Chalker DL, Sandmeyer SB. Ty3, a yeast retrotransposon associated with tRNA genes, has homology to animal retroviruses. Mol Cell Biol. 1988; 8(12):5245-56. Epub 1988/12/01. PMID: 2854194; PubMed Central PMCID: PMCPMC365627.
-
(1988)
Mol Cell Biol
, vol.8
, Issue.12
, pp. 5245-5256
-
-
Hansen, L.J.1
Chalker, D.L.2
Sandmeyer, S.B.3
-
57
-
-
84952876465
-
The influence of LINE-1 and SINE retrotransposons on mammalian genomes
-
Epub 2015/06/25. PMID: 26104698
-
Richardson SR, Doucet AJ, Kopera HC, Moldovan JB, Garcia-Perez JL, Moran JV. The Influence of LINE-1 and SINE Retrotransposons on Mammalian Genomes. Microbiol Spectr. 2015; 3(2). Epub 2015/06/25. doi: 10.1128/microbiolspec.MDNA3-0061-2014 PMID: 26104698.
-
(2015)
Microbiol Spectr
, vol.3
, Issue.2
-
-
Richardson, S.R.1
Doucet, A.J.2
Kopera, H.C.3
Moldovan, J.B.4
Garcia-Perez, J.L.5
Moran, J.V.6
-
58
-
-
0035022621
-
L1-like non-LTR retrotransposons in the yeast Candida albicans
-
Epub 2001/06/19. PMID: 11405100
-
Goodwin TJ, Ormandy JE, Poulter RT. L1-like non-LTR retrotransposons in the yeast Candida albicans. Curr Genet. 2001; 39(2):83-91. Epub 2001/06/19. PMID: 11405100.
-
(2001)
Curr Genet
, vol.39
, Issue.2
, pp. 83-91
-
-
Goodwin, T.J.1
Ormandy, J.E.2
Poulter, R.T.3
-
59
-
-
57049092878
-
The take and give between retrotransposable elements and their hosts
-
Epub 2008/08/06. PMID: 18680436 PubMed Central PMCID: PMCPMC2665727
-
Beauregard A, Curcio MJ, Belfort M. The take and give between retrotransposable elements and their hosts. Annu Rev Genet. 2008; 42:587-617. Epub 2008/08/06. doi: 10.1146/annurev.genet.42.110807. 091549 PMID: 18680436; PubMed Central PMCID: PMCPMC2665727.
-
(2008)
Annu Rev Genet
, vol.42
, pp. 587-617
-
-
Beauregard, A.1
Curcio, M.J.2
Belfort, M.3
-
60
-
-
0041353551
-
LINE-mediated retrotransposition of marked Alu sequences
-
Epub 2003/08/05. PMID: 12897783
-
Dewannieux M, Esnault C, Heidmann T. LINE-mediated retrotransposition of marked Alu sequences. Nat Genet. 2003; 35(1):41-8. Epub 2003/08/05. doi: 10.1038/ng1223ng1223 [pii]. PMID: 12897783.
-
(2003)
Nat Genet
, vol.35
, Issue.1
, pp. 41-48
-
-
Dewannieux, M.1
Esnault, C.2
Heidmann, T.3
-
61
-
-
84876581626
-
SINEBase: A database and tool for SINE analysis
-
Epub 2012/12/04. PMID: 23203982; PubMed Central PMCID: PMC3531059
-
Vassetzky NS, Kramerov DA. SINEBase: a database and tool for SINE analysis. Nucleic Acids Res. 2013; 41(Database issue):D83-9. Epub 2012/12/04. doi: 10.1093/nar/gks1263 PMID: 23203982; PubMed Central PMCID: PMC3531059.
-
(2013)
Nucleic Acids Res
, vol.41
, Issue.DATABASE ISSUE
, pp. D83-D89
-
-
Vassetzky, N.S.1
Kramerov, D.A.2
-
62
-
-
81355161552
-
Origin and evolution of SINEs in eukaryotic genomes
-
Epub 2011/06/16. PMID: 21673742; PubMed Central PMCID: PMC3242629
-
Kramerov DA, Vassetzky NS. Origin and evolution of SINEs in eukaryotic genomes. Heredity. 2011; 107(6):487-95. Epub 2011/06/16. doi: 10.1038/hdy.2011.43 PMID: 21673742; PubMed Central PMCID: PMC3242629.
-
(2011)
Heredity
, vol.107
, Issue.6
, pp. 487-495
-
-
Kramerov, D.A.1
Vassetzky, N.S.2
-
63
-
-
0036275447
-
Getting started with yeast
-
Sherman F. Getting started with yeast. Methods Enzymol. 2002; 350B:3-41.
-
(2002)
Methods Enzymol
, vol.350 B
, pp. 3-41
-
-
Sherman, F.1
-
64
-
-
84991695296
-
-
Current Protocols in Molecular Biology: John Wiley and Sons, Inc
-
Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, et al. Current Protocols in Molecular Biology: John Wiley and Sons, Inc.; 2007.
-
(2007)
-
-
Ausubel, F.M.1
Brent, R.2
Kingston, R.E.3
Moore, D.D.4
Seidman, J.G.5
Smith, J.A.6
-
65
-
-
43149115851
-
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
-
Epub 2008/03/20. PMID: 18349386; PubMed Central PMCID: PMC2336801
-
Zerbino DR, Birney E. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 2008; 18(5):821-9. Epub 2008/03/20. doi: 10.1101/gr.074492.107 PMID: 18349386; PubMed Central PMCID: PMC2336801.
-
(2008)
Genome Res
, vol.18
, Issue.5
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
66
-
-
0025183708
-
Basic local alignment search tool
-
PMID: 2231712 Epub 1990/10/05
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol. 1990; 215(3):403-10. Epub 1990/10/05. doi: 10.1016/S0022-2836(05)80360-2 PMID: 2231712.
-
(1990)
J Mol Biol
, vol.215
, Issue.3
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
67
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
Epub 2007/09/12. PMID: 17846036
-
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, et al. Clustal W and Clustal X version 2.0. Bioinformatics. 2007; 23(21):2947-8. Epub 2007/09/12. doi: 10.1093/ bioinformatics/btm404 PMID: 17846036.
-
(2007)
Bioinformatics
, vol.23
, Issue.21
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
-
68
-
-
0030854739
-
tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
-
Epub 1997/03/01. gka184 [pii]. PMID: 9023104; PubMed Central PMCID: PMC146525
-
Lowe TM, Eddy SR. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 1997; 25(5):955-64. Epub 1997/03/01. gka184 [pii]. PMID: 9023104; PubMed Central PMCID: PMC146525.
-
(1997)
Nucleic Acids Res
, vol.25
, Issue.5
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
69
-
-
65449136284
-
TopHat: Discovering splice junctions with RNA-Seq
-
Epub 2009/03/18. PMID: 19289445; PubMed Central PMCID: PMC2672628
-
Trapnell C, Pachter L, Salzberg SL. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics. 2009; 25(9):1105-11. Epub 2009/03/18. doi: 10.1093/bioinformatics/btp120 PMID: 19289445; PubMed Central PMCID: PMC2672628.
-
(2009)
Bioinformatics
, vol.25
, Issue.9
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
70
-
-
29144453390
-
Gene identification in novel eukaryotic genomes by self-training algorithm
-
Epub 2005/11/30. PMID: 16314312; PubMed Central PMCID: PMC1298918
-
Lomsadze A, Ter-Hovhannisyan V, Chernoff YO, Borodovsky M. Gene identification in novel eukaryotic genomes by self-training algorithm. Nucleic Acids Res. 2005; 33(20):6494-506. Epub 2005/11/30. doi: 10.1093/nar/gki937 PMID: 16314312; PubMed Central PMCID: PMC1298918.
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.20
, pp. 6494-6506
-
-
Lomsadze, A.1
Ter-Hovhannisyan, V.2
Chernoff, Y.O.3
Borodovsky, M.4
-
71
-
-
57149099395
-
Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training
-
Epub 2008/09/02. PMID: 18757608; PubMed Central PMCID: PMC2593577
-
Ter-Hovhannisyan V, Lomsadze A, Chernoff YO, Borodovsky M. Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training. Genome Res. 2008; 18(12):1979-90. Epub 2008/09/02. doi: 10.1101/gr.081612.108 PMID: 18757608; PubMed Central PMCID: PMC2593577.
-
(2008)
Genome Res
, vol.18
, Issue.12
, pp. 1979-1990
-
-
Ter-Hovhannisyan, V.1
Lomsadze, A.2
Chernoff, Y.O.3
Borodovsky, M.4
-
72
-
-
23144444421
-
AUGUSTUS: A web server for gene prediction in eukaryotes that allows user-defined constraints
-
Epub 2005/06/28. PMID: 15980513; PubMed Central PMCID: PMC1160219
-
Stanke M, Morgenstern B. AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints. Nucleic Acids Res. 2005; 33(Web Server issue):W465-7. Epub 2005/06/28. doi: 10.1093/nar/gki458 PMID: 15980513; PubMed Central PMCID: PMC1160219.
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.WEB SERVER ISSUE
, pp. W465-W467
-
-
Stanke, M.1
Morgenstern, B.2
-
73
-
-
84946069451
-
UniProt: A hub for protein information
-
Epub 2014/10/29. PMID: 25348405; PubMed Central PMCID: PMC4384041
-
UniProt C. UniProt: a hub for protein information. Nucleic Acids Res. 2015; 43(Database issue):D204-12. Epub 2014/10/29. doi: 10.1093/nar/gku989 PMID: 25348405; PubMed Central PMCID: PMC4384041.
-
(2015)
Nucleic Acids Res
, vol.43
, Issue.DATABASE ISSUE
, pp. D204-D212
-
-
UniProt, C.1
-
74
-
-
84966649866
-
xGDBvm: A Web GUI-driven workflow for annotating eukaryotic genomes in the cloud
-
Epub 2016/03/30. PMID: 27020957
-
Duvick J, Standage DS, Merchant N, Brendel VP. xGDBvm: A Web GUI-driven workflow for annotating eukaryotic genomes in the cloud. The Plant cell. 2016. Epub 2016/03/30. doi: 10.1105/tpc.15.00933 PMID: 27020957.
-
(2016)
The Plant cell
-
-
Duvick, J.1
Standage, D.S.2
Merchant, N.3
Brendel, V.P.4
-
76
-
-
84859622599
-
Mitochondrial genomes of yeasts of the Yarrowia clade
-
Epub 2011/12/23. PMID: 22188421
-
Gaillardin C, Neuveglise C, Kerscher S, Nicaud JM. Mitochondrial genomes of yeasts of the Yarrowia clade. FEMS yeast research. 2012; 12(3):317-31. Epub 2011/12/23. doi: 10.1111/j.1567-1364.2011. 00782.x PMID: 22188421.
-
(2012)
FEMS yeast research
, vol.12
, Issue.3
, pp. 317-331
-
-
Gaillardin, C.1
Neuveglise, C.2
Kerscher, S.3
Nicaud, J.M.4
-
77
-
-
0035022106
-
The complete mitochondrial genome of yarrowia lipolytica
-
Epub 2008/07/17. PMID: 18628906; PubMed Central PMCID: PMC2447202
-
Kerscher S, Durstewitz G, Casaregola S, Gaillardin C, Brandt U. The complete mitochondrial genome of yarrowia lipolytica. Comp Funct Genomics. 2001; 2(2):80-90. Epub 2008/07/17. doi: 10.1002/cfg.72 PMID: 18628906; PubMed Central PMCID: PMC2447202.
-
(2001)
Comp Funct Genomics
, vol.2
, Issue.2
, pp. 80-90
-
-
Kerscher, S.1
Durstewitz, G.2
Casaregola, S.3
Gaillardin, C.4
Brandt, U.5
-
79
-
-
2942538300
-
Versatile and open software for comparing large genomes
-
Epub 2004/02/05. PMID: 14759262; PubMed Central PMCID: PMC395750
-
Kurtz S, Phillippy A, Delcher AL, Smoot M, Shumway M, Antonescu C, et al. Versatile and open software for comparing large genomes. Genome Biol. 2004; 5(2):R12. Epub 2004/02/05. doi: 10.1186/gb-2004-5-2-r12 PMID: 14759262; PubMed Central PMCID: PMC395750.
-
(2004)
Genome Biol
, vol.5
, Issue.2
, pp. R12
-
-
Kurtz, S.1
Phillippy, A.2
Delcher, A.L.3
Smoot, M.4
Shumway, M.5
Antonescu, C.6
|