ATAC-see reveals the accessible genome by transposase-mediated imaging and sequencing

Nature Methods

Volumn 13, Issue 12, 2016, Pages 1013-1020

  Chen, Xingqi ^a   Shen, Ying ^a   Draper, Will ^b   Buenrostro, Jason D ^a   Litzenburger, Ulrike ^a   Cho, Seung Woo ^a   Satpathy, Ansuman T ^a   Carter, Ava C ^a   Ghosh, Rajarshi P ^b   East Seletsky, Alexandra ^c   Doudna, Jennifer A ^c,d   Greenleaf, William J ^a   Liphardt, Jan T ^b   Chang, Howard Y ^a  

^a STANFORD UNIVERSITY   (United States)

^b Stanford University   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA; LAMIN; MITOCHONDRIAL DNA; MITOCHONDRIAL PROTEIN; PHORBOL 13 ACETATE 12 MYRISTATE; RNA POLYMERASE II; TRANSPOSASE; ATTO590; CHROMATIN; FLUORESCENT DYE; FUSED HETEROCYCLIC RINGS; TN5 TRANSPOSASE; TRANSPOSON;

ARTICLE; ASSAY FOR TRANSPOSASE ACCESSIBLE CHROMATIN; AUTOMATION; CELL ASSAY; CELL ISOLATION; CELL SELECTION; CHROMATIN; CONTROLLED STUDY; EPIGENETICS; FEMALE; FLOW CYTOMETRY; GENE CONTROL; GENE EXPRESSION; GENE SEQUENCE; GENETIC IDENTIFICATION; GENOME; GENOME ANALYSIS; HIGH THROUGHPUT SEQUENCING; HUMAN; HUMAN CELL; MOLECULAR IMAGING; NEUTROPHIL; PRIORITY JOURNAL; CD4+ T LYMPHOCYTE; CELL LINE; CHEMISTRY; CHROMATIN ASSEMBLY AND DISASSEMBLY; CONFOCAL MICROSCOPY; GENETIC EPIGENESIS; GENETICS; HUMAN GENOME; IMAGE PROCESSING; METABOLISM; STAINING; TRANSPOSON;

CD4-POSITIVE T-LYMPHOCYTES; CELL LINE; CHROMATIN; CHROMATIN ASSEMBLY AND DISASSEMBLY; DNA TRANSPOSABLE ELEMENTS; EPIGENESIS, GENETIC; FLOW CYTOMETRY; FLUORESCENT DYES; GENOME, HUMAN; HETEROCYCLIC COMPOUNDS, 4 OR MORE RINGS; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; MICROSCOPY, CONFOCAL; NEUTROPHILS; STAINING AND LABELING; TRANSPOSASES;

EID: 84991574515     PISSN: 15487091     EISSN: 15487105     Source Type: Journal    
DOI: 10.1038/nmeth.4031     Document Type: Article

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