-
1
-
-
31444434447
-
A multiplex PCR predictor for aCGH success of FFPE samples
-
van Beers EH, Joosse SA, Ligtenberg MJ, Fles R, Hogervorst FBL, Verhoef S, Nederlof PM. A multiplex PCR predictor for aCGH success of FFPE samples. Br J Cancer. 2005; 94:333-337
-
(2005)
Br J Cancer
, vol.94
, pp. 333-337
-
-
van Beers, E.H.1
Joosse, S.A.2
Ligtenberg, M.J.3
Fles, R.4
Hogervorst, F.B.L.5
Verhoef, S.6
Nederlof, P.M.7
-
2
-
-
80053173227
-
Targeted high throughput sequencing in clinical cancer Settings: formaldehyde fixedparaffin embedded (FFPE) tumor tissues, input amount and tumor heterogeneity
-
Kerick M, Isau M, Timmermann B, Sultmann H, Herwig R, Krobitsch S, Schaefer G, Verdorfer I, Bartsch G, Klocker H, Lehrach H, Schweiger M. Targeted high throughput sequencing in clinical cancer Settings: formaldehyde fixedparaffin embedded (FFPE) tumor tissues, input amount and tumor heterogeneity. BMC Med Genet. 2011; 4:68
-
(2011)
BMC Med Genet
, vol.4
, pp. 68
-
-
Kerick, M.1
Isau, M.2
Timmermann, B.3
Sultmann, H.4
Herwig, R.5
Krobitsch, S.6
Schaefer, G.7
Verdorfer, I.8
Bartsch, G.9
Klocker, H.10
Lehrach, H.11
Schweiger, M.12
-
3
-
-
65849458558
-
Genome-Wide Massively Parallel Sequencing of Formaldehyde Fixed-Paraffin Embedded (FFPE) Tumor Tissues for Copy-Number-and Mutation-Analysis
-
Schweiger MR, Kerick M, Timmermann B, Albrecht MW, Borodina T, Parkhomchuk D, Zatloukal K, Lehrach H. Genome-Wide Massively Parallel Sequencing of Formaldehyde Fixed-Paraffin Embedded (FFPE) Tumor Tissues for Copy-Number-and Mutation-Analysis. PLoS ONE. 2009; 4:e5548
-
(2009)
PLoS ONE
, vol.4
-
-
Schweiger, M.R.1
Kerick, M.2
Timmermann, B.3
Albrecht, M.W.4
Borodina, T.5
Parkhomchuk, D.6
Zatloukal, K.7
Lehrach, H.8
-
4
-
-
77955778246
-
Using nextgeneration sequencing for high resolution multiplex analysis of copy number variation from nanogram quantities of DNA from formalin-fixed paraffin-embedded specimens
-
Wood HM, Belvedere O, Conway C, Daly C, Chalkley R, Bickerdike M, McKinley C, Egan P, Ross L, Hayward B, Morgan J, Davidson L, MacLennan K, et al. Using nextgeneration sequencing for high resolution multiplex analysis of copy number variation from nanogram quantities of DNA from formalin-fixed paraffin-embedded specimens. Nucleic Acids Res. 2010; 38:e151
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Wood, H.M.1
Belvedere, O.2
Conway, C.3
Daly, C.4
Chalkley, R.5
Bickerdike, M.6
McKinley, C.7
Egan, P.8
Ross, L.9
Hayward, B.10
Morgan, J.11
Davidson, L.12
MacLennan, K.13
-
5
-
-
84902148239
-
Whole-exome sequencing and clinical interpretation of FFPE tumor samples to guide precision cancer medicine
-
Allen EMV, Wagle N, Stojanov P, Perrin DL, Cibulskis K, Marlow S, Jane-Valbuena J, Friedrich DC, Kryukov G, Carter SL, McKenna A, Sivachenko A, Rosenberg M, et al. Whole-exome sequencing and clinical interpretation of FFPE tumor samples to guide precision cancer medicine. Nat Med. 2014; 20:682-688
-
(2014)
Nat Med
, vol.20
, pp. 682-688
-
-
Allen, E.M.V.1
Wagle, N.2
Stojanov, P.3
Perrin, D.L.4
Cibulskis, K.5
Marlow, S.6
Jane-Valbuena, J.7
Friedrich, D.C.8
Kryukov, G.9
Carter, S.L.10
McKenna, A.11
Sivachenko, A.12
Rosenberg, M.13
-
6
-
-
84864351002
-
Exome Enrichment and SOLiD Sequencing of Formalin Fixed Paraffin Embedded (FFPE) Prostate Cancer Tissue
-
Menon R, Deng M, Boehm D, Braun M, Fend F, Boehm D, Biskup S, Perner S. Exome Enrichment and SOLiD Sequencing of Formalin Fixed Paraffin Embedded (FFPE) Prostate Cancer Tissue. Int J Mol Sci. 2012; 13:8933-8942
-
(2012)
Int J Mol Sci
, vol.13
, pp. 8933-8942
-
-
Menon, R.1
Deng, M.2
Boehm, D.3
Braun, M.4
Fend, F.5
Boehm, D.6
Biskup, S.7
Perner, S.8
-
7
-
-
84865833740
-
High-throughput detection of actionable genomic alterations in clinical tumor samples by targeted, massively parallel sequencing
-
Wagle N, Berger MF, Davis MJ, Blumenstiel B, DeFelice M, Pochanard P, Ducar M, Van Hummelen P, MacConaill LE, Hahn WC. High-throughput detection of actionable genomic alterations in clinical tumor samples by targeted, massively parallel sequencing. Cancer Discov. 2012; 2:82-93
-
(2012)
Cancer Discov
, vol.2
, pp. 82-93
-
-
Wagle, N.1
Berger, M.F.2
Davis, M.J.3
Blumenstiel, B.4
DeFelice, M.5
Pochanard, P.6
Ducar, M.7
Van Hummelen, P.8
MacConaill, L.E.9
Hahn, W.C.10
-
8
-
-
84937847117
-
Targeted or whole genome sequencing of formalin fixed tissue samples: potential applications in cancer genomics
-
Munchel S, Hoang Y, Zhao Y, Cottrell J, Klotzle B, Godwin AK, Koestler D, Beyerlein P, Fan J-B, Bibikova M, Chien J. Targeted or whole genome sequencing of formalin fixed tissue samples: potential applications in cancer genomics. Oncotarget; Vol 6, No 28. 2015. doi: 10.18632/oncotarget.4671
-
(2015)
Oncotarget;
, vol.6
, Issue.28
-
-
Munchel, S.1
Hoang, Y.2
Zhao, Y.3
Cottrell, J.4
Klotzle, B.5
Godwin, A.K.6
Koestler, D.7
Beyerlein, P.8
Fan, J.-B.9
Bibikova, M.10
Chien, J.11
-
9
-
-
84946550295
-
Whole exome sequencing (WES) on formalin-fixed, paraffin-embedded (FFPE) tumor tissue in gastrointestinal stromal tumors (GIST)
-
Astolfi A, Urbini M, Indio V, Nannini M, Genovese CG, Santini D, Saponara M, Mandrioli A, Ercolani G, Brandi G, Biasco G, Pantaleo MA. Whole exome sequencing (WES) on formalin-fixed, paraffin-embedded (FFPE) tumor tissue in gastrointestinal stromal tumors (GIST). BMC Genomics. 2015; 16:892
-
(2015)
BMC Genomics
, vol.16
, pp. 892
-
-
Astolfi, A.1
Urbini, M.2
Indio, V.3
Nannini, M.4
Genovese, C.G.5
Santini, D.6
Saponara, M.7
Mandrioli, A.8
Ercolani, G.9
Brandi, G.10
Biasco, G.11
Pantaleo, M.A.12
-
10
-
-
84876033286
-
Targeted Next-generation Sequencing of Advanced Prostate Cancer Identifies Potential Therapeutic Targets and Disease Heterogeneity
-
Beltran H, Yelensky R, Frampton GM, Park K, Downing SR, MacDonald TY, Jarosz M, Lipson D, Tagawa ST, Nanus DM. Targeted Next-generation Sequencing of Advanced Prostate Cancer Identifies Potential Therapeutic Targets and Disease Heterogeneity. Eur Urol. 2012
-
(2012)
Eur Urol
-
-
Beltran, H.1
Yelensky, R.2
Frampton, G.M.3
Park, K.4
Downing, S.R.5
MacDonald, T.Y.6
Jarosz, M.7
Lipson, D.8
Tagawa, S.T.9
Nanus, D.M.10
-
11
-
-
84875500588
-
Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA
-
Gansauge M-T, Meyer M. Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA. Nat Protoc. 2013; 8:737-748
-
(2013)
Nat Protoc
, vol.8
, pp. 737-748
-
-
Gansauge, M.-T.1
Meyer, M.2
-
12
-
-
84867331947
-
A High-Coverage Genome Sequence from an Archaic Denisovan Individual
-
Meyer M, Kircher M, Gansauge M-T, Li H, Racimo F, Mallick S, Schraiber JG, Jay F, Prüfer K, de Filippo C, Sudmant PH, Alkan C, Fu Q, et al. A High-Coverage Genome Sequence from an Archaic Denisovan Individual. Science. 2012; 338:222-226
-
(2012)
Science
, vol.338
, pp. 222-226
-
-
Meyer, M.1
Kircher, M.2
Gansauge, M.-T.3
Li, H.4
Racimo, F.5
Mallick, S.6
Schraiber, J.G.7
Jay, F.8
Prüfer, K.9
de Filippo, C.10
Sudmant, P.H.11
Alkan, C.12
Fu, Q.13
-
13
-
-
77956285690
-
Illumina Sequencing Library Preparation for Highly Multiplexed Target Capture and Sequencing
-
Meyer M, Kircher M. Illumina Sequencing Library Preparation for Highly Multiplexed Target Capture and Sequencing. Cold Spring Harb Protoc. 2010; 2010:pdb. prot5448
-
(2010)
Cold Spring Harb Protoc
, vol.2010
-
-
Meyer, M.1
Kircher, M.2
-
14
-
-
84875700725
-
Predicting the molecular complexity of sequencing libraries
-
Daley T, Smith AD. Predicting the molecular complexity of sequencing libraries. Nat Methods. 2013; 10:325-327
-
(2013)
Nat Methods
, vol.10
, pp. 325-327
-
-
Daley, T.1
Smith, A.D.2
-
15
-
-
55349105499
-
DNA damage in preserved specimens and tissue samples: a molecular assessment
-
Zimmermann J, Hajibabaei M, Blackburn DC, Hanken J, Cantin E, Posfai J, Evans TC. DNA damage in preserved specimens and tissue samples: a molecular assessment. Front Zool. 2008; 5:18
-
(2008)
Front Zool
, vol.5
, pp. 18
-
-
Zimmermann, J.1
Hajibabaei, M.2
Blackburn, D.C.3
Hanken, J.4
Cantin, E.5
Posfai, J.6
Evans, T.C.7
-
16
-
-
0016694032
-
Formaldehyde as a probe of DNA structure. I. Reaction with exocyclic amino groups of DNA bases
-
McGhee JD, Von Hippel PH. Formaldehyde as a probe of DNA structure. I. Reaction with exocyclic amino groups of DNA bases. Biochemistry. 1975; 14:1281-1296
-
(1975)
Biochemistry
, vol.14
, pp. 1281-1296
-
-
McGhee, J.D.1
Von Hippel, P.H.2
-
17
-
-
84872784631
-
Formaldehyde preferentially interstrand cross-links duplex DNA through deoxyadenosine residues at the sequence 5'-d (AT)
-
Huang H, Solomon MS, Hopkins PB. Formaldehyde preferentially interstrand cross-links duplex DNA through deoxyadenosine residues at the sequence 5'-d (AT). J Am Chem Soc. 1992; 114:9240-9241
-
(1992)
J Am Chem Soc
, vol.114
, pp. 9240-9241
-
-
Huang, H.1
Solomon, M.S.2
Hopkins, P.B.3
-
18
-
-
78651330430
-
COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer
-
Forbes SA, Bindal N, Bamford S, Cole C, Kok CY, Beare D, Jia M, Shepherd R, Leung K, Menzies A, Teague JW, Campbell PJ, Stratton MR, et al. COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer. Nucleic Acids Res. 2011; 39:D945-D950
-
(2011)
Nucleic Acids Res
, vol.39
, pp. D945-D950
-
-
Forbes, S.A.1
Bindal, N.2
Bamford, S.3
Cole, C.4
Kok, C.Y.5
Beare, D.6
Jia, M.7
Shepherd, R.8
Leung, K.9
Menzies, A.10
Teague, J.W.11
Campbell, P.J.12
Stratton, M.R.13
-
19
-
-
84864917026
-
Identification of high-confidence somatic mutations in whole genome sequence of formalin-fixed breast cancer specimens
-
Yost SE, Smith EN, Schwab RB, Bao L, Jung H, Wang X, Voest E, Pierce JP, Messer K, Parker BA. Identification of high-confidence somatic mutations in whole genome sequence of formalin-fixed breast cancer specimens. Nucleic Acids Res. 2012; 40:e107-e107
-
(2012)
Nucleic Acids Res
, vol.40
, pp. e107-e107
-
-
Yost, S.E.1
Smith, E.N.2
Schwab, R.B.3
Bao, L.4
Jung, H.5
Wang, X.6
Voest, E.7
Pierce, J.P.8
Messer, K.9
Parker, B.A.10
-
20
-
-
84882261506
-
Comparison of clinical targeted nextgeneration sequence data from formalin-fixed and freshfrozen tissue specimens
-
Spencer DH, Sehn JK, Abel HJ, Watson MA, Pfeifer JD, Duncavage EJ. Comparison of clinical targeted nextgeneration sequence data from formalin-fixed and freshfrozen tissue specimens. J Mol Diagn. 2013; 15:623-633
-
(2013)
J Mol Diagn
, vol.15
, pp. 623-633
-
-
Spencer, D.H.1
Sehn, J.K.2
Abel, H.J.3
Watson, M.A.4
Pfeifer, J.D.5
Duncavage, E.J.6
-
21
-
-
0000668611
-
DNA interstrand cross-linking by formaldehyde: nucleotide sequence preference and covalent structure of the predominant cross-link formed in synthetic oligonucleotides
-
Huang H, Hopkins PB. DNA interstrand cross-linking by formaldehyde: nucleotide sequence preference and covalent structure of the predominant cross-link formed in synthetic oligonucleotides. J Am Chem Soc. 1993; 115:9402-9408
-
(1993)
J Am Chem Soc
, vol.115
, pp. 9402-9408
-
-
Huang, H.1
Hopkins, P.B.2
-
22
-
-
85060263973
-
Genotoxicity of formaldehyde: molecular basis of DNA damage and mutation
-
Kawanishi M, Matsuda T, Yagi T. Genotoxicity of formaldehyde: molecular basis of DNA damage and mutation. Front Environ Sci. 2014; 2:36
-
(2014)
Front Environ Sci
, vol.2
, pp. 36
-
-
Kawanishi, M.1
Matsuda, T.2
Yagi, T.3
-
23
-
-
34848827224
-
Patterns of damage in genomic DNA sequences from a Neandertal
-
Briggs AW, Stenzel U, Johnson PL, Green RE, Kelso J, Prüfer K, Meyer M, Krause J, Ronan MT, Lachmann M. Patterns of damage in genomic DNA sequences from a Neandertal. Proc Natl Acad Sci USA. 2007; 104:14616-14621
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 14616-14621
-
-
Briggs, A.W.1
Stenzel, U.2
Johnson, P.L.3
Green, R.E.4
Kelso, J.5
Prüfer, K.6
Meyer, M.7
Krause, J.8
Ronan, M.T.9
Lachmann, M.10
-
24
-
-
84863230079
-
New insights into the Tyrolean Iceman's origin and phenotype as inferred by whole-genome sequencing
-
Keller A, Graefen A, Ball M, Matzas M, Boisguerin V, Maixner F, Leidinger P, Backes C, Khairat R, Forster M. New insights into the Tyrolean Iceman's origin and phenotype as inferred by whole-genome sequencing. Nat Commun. 2012; 3:698
-
(2012)
Nat Commun
, vol.3
, pp. 698
-
-
Keller, A.1
Graefen, A.2
Ball, M.3
Matzas, M.4
Boisguerin, V.5
Maixner, F.6
Leidinger, P.7
Backes, C.8
Khairat, R.9
Forster, M.10
-
25
-
-
13944278588
-
ENZYMATIC DEAMINATION OF CYTOSINE NUCLEOSIDES
-
Wang TP, Sable HZ, Lampen JO. ENZYMATIC DEAMINATION OF CYTOSINE NUCLEOSIDES. J Biol Chem. 1950; 184:17-28
-
(1950)
J Biol Chem
, vol.184
, pp. 17-28
-
-
Wang, T.P.1
Sable, H.Z.2
Lampen, J.O.3
-
26
-
-
33846667604
-
Recharacterization of ancient DNA miscoding lesions: insights in the era of sequencing-by-synthesis
-
Gilbert MTP, Binladen J, Miller W, Wiuf C, Willerslev E, Poinar H, Carlson JE, Leebens-Mack JH, Schuster SC. Recharacterization of ancient DNA miscoding lesions: insights in the era of sequencing-by-synthesis. Nucleic Acids Res. 2007; 35:1-10
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 1-10
-
-
Gilbert, M.T.P.1
Binladen, J.2
Miller, W.3
Wiuf, C.4
Willerslev, E.5
Poinar, H.6
Carlson, J.E.7
Leebens-Mack, J.H.8
Schuster, S.C.9
-
27
-
-
33748783644
-
Patterns of nucleotide misincorporations during enzymatic amplification and direct large-scale sequencing of ancient DNA
-
Stiller M, Green RE, Ronan M, Simons JF, Du L, He W, Egholm M, Rothberg JM, Keates SG, Ovodov ND. Patterns of nucleotide misincorporations during enzymatic amplification and direct large-scale sequencing of ancient DNA. Proc Natl Acad Sci USA. 2006; 103:13578-13584
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 13578-13584
-
-
Stiller, M.1
Green, R.E.2
Ronan, M.3
Simons, J.F.4
Du, L.5
He, W.6
Egholm, M.7
Rothberg, J.M.8
Keates, S.G.9
Ovodov, N.D.10
-
28
-
-
0021102439
-
Enzymic detection of uracil in a cloned and sequenced deoxyribonucleic acid segment
-
Weiss RB, Mineura K, Henderson EE, Duker NJ, DeRiel JK. Enzymic detection of uracil in a cloned and sequenced deoxyribonucleic acid segment. Biochemistry. 1983; 22:4501-4507
-
(1983)
Biochemistry
, vol.22
, pp. 4501-4507
-
-
Weiss, R.B.1
Mineura, K.2
Henderson, E.E.3
Duker, N.J.4
DeRiel, J.K.5
-
29
-
-
0032755991
-
A high frequency of sequence alterations is due to formalin fixation of archival specimens
-
Williams C, Pontén F, Moberg C, Söderkvist P, Uhlén M, Pontén J, Sitbon G, Lundeberg J. A high frequency of sequence alterations is due to formalin fixation of archival specimens. Am J Pathol. 1999; 155:1467-1471
-
(1999)
Am J Pathol
, vol.155
, pp. 1467-1471
-
-
Williams, C.1
Pontén, F.2
Moberg, C.3
Söderkvist, P.4
Uhlén, M.5
Pontén, J.6
Sitbon, G.7
Lundeberg, J.8
-
30
-
-
84960155476
-
Impact of Pre-Analytical Variables on Cancer Targeted Gene Sequencing Efficiency
-
Araujo LH, Timmers C, Shilo K, Zhao W, Zhang J, Yu L, Natarajan TG, Miller CJ, Yilmaz AS, Liu T. Impact of Pre-Analytical Variables on Cancer Targeted Gene Sequencing Efficiency. PLoS ONE. 2015; 10:e0143092
-
(2015)
PLoS ONE
, vol.10
-
-
Araujo, L.H.1
Timmers, C.2
Shilo, K.3
Zhao, W.4
Zhang, J.5
Yu, L.6
Natarajan, T.G.7
Miller, C.J.8
Yilmaz, A.S.9
Liu, T.10
-
31
-
-
84882837534
-
Signatures of mutational processes in human cancer
-
Alexandrov LB, Nik-Zainal S, Wedge DC, Aparicio SAJR, Behjati S, Biankin AV, Bignell GR, Bolli N, Borg A, Børresen-Dale A-L. Signatures of mutational processes in human cancer. Nature. 2013; 500:415-421
-
(2013)
Nature
, vol.500
, pp. 415-421
-
-
Alexandrov, L.B.1
Nik-Zainal, S.2
Wedge, D.C.3
Aparicio, S.A.J.R.4
Behjati, S.5
Biankin, A.V.6
Bignell, G.R.7
Bolli, N.8
Borg, A.9
Børresen-Dale, A.-L.10
-
32
-
-
84861541343
-
Mutational processes molding the genomes of 21 breast cancers
-
Nik-Zainal S, Alexandrov LB, Wedge DC, Van Loo P, Greenman CD, Raine K, Jones D, Hinton J, Marshall J, Stebbings LA. Mutational processes molding the genomes of 21 breast cancers. Cell. 2012; 149:979-993
-
(2012)
Cell
, vol.149
, pp. 979-993
-
-
Nik-Zainal, S.1
Alexandrov, L.B.2
Wedge, D.C.3
Van Loo, P.4
Greenman, C.D.5
Raine, K.6
Jones, D.7
Hinton, J.8
Marshall, J.9
Stebbings, L.A.10
-
33
-
-
84938877820
-
Reducing microbial and human contamination in DNA extractions from ancient bones and teeth
-
Korlevic P, Gerber T, Gansauge M-T, Hajdinjak M, Nagel S, Ayinuer-Petri A, Meyer M. Reducing microbial and human contamination in DNA extractions from ancient bones and teeth. Biotechniques. 2015; 59:87-93
-
(2015)
Biotechniques
, vol.59
, pp. 87-93
-
-
Korlevic, P.1
Gerber, T.2
Gansauge, M.-T.3
Hajdinjak, M.4
Nagel, S.5
Ayinuer-Petri, A.6
Meyer, M.7
-
34
-
-
84857244374
-
Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform
-
Kircher M, Sawyer S, Meyer M. Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform. Nucleic Acids Res. 2011:gkr771
-
(2011)
Nucleic Acids Res
-
-
Kircher, M.1
Sawyer, S.2
Meyer, M.3
-
35
-
-
84857271408
-
Length and GC-biases during sequencing library amplification: a comparison of various polymerase-buffer systems with ancient and modern DNA sequencing libraries
-
Dabney J, Meyer M. Length and GC-biases during sequencing library amplification: a comparison of various polymerase-buffer systems with ancient and modern DNA sequencing libraries. Biotechniques. 2012; 52:87-94
-
(2012)
Biotechniques
, vol.52
, pp. 87-94
-
-
Dabney, J.1
Meyer, M.2
-
36
-
-
84873426880
-
DNA analysis of an early modern human from Tianyuan Cave, China
-
Fu Q, Meyer M, Gao X, Stenzel U, Burbano HA, Kelso J, Pääbo S. DNA analysis of an early modern human from Tianyuan Cave, China. Proc Natl Acad Sci USA. 2013; 110:2223-2227
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, pp. 2223-2227
-
-
Fu, Q.1
Meyer, M.2
Gao, X.3
Stenzel, U.4
Burbano, H.A.5
Kelso, J.6
Pääbo, S.7
-
37
-
-
84886402148
-
freeIbis: an efficient basecaller with calibrated quality scores for Illumina sequencers
-
Renaud G, Kircher M, Stenzel U, Kelso J. freeIbis: an efficient basecaller with calibrated quality scores for Illumina sequencers. Bioinformatics. 2013; 29:1208-1209
-
(2013)
Bioinformatics
, vol.29
, pp. 1208-1209
-
-
Renaud, G.1
Kircher, M.2
Stenzel, U.3
Kelso, J.4
-
38
-
-
84922394220
-
leeHom: adaptor trimming and merging for Illumina sequencing reads
-
Renaud G, Stenzel U, Kelso J. leeHom: adaptor trimming and merging for Illumina sequencing reads. Nucleic Acids Res. 2014; 42:e141-e141
-
(2014)
Nucleic Acids Res
, vol.42
, pp. e141-e141
-
-
Renaud, G.1
Stenzel, U.2
Kelso, J.3
-
39
-
-
84929008489
-
deML: robust demultiplexing of Illumina sequences using a likelihood-based approach
-
Renaud G, Stenzel U, Maricic T, Wiebe V, Kelso J. deML: robust demultiplexing of Illumina sequences using a likelihood-based approach. Bioinformatics. 2015; 31:770-772
-
(2015)
Bioinformatics
, vol.31
, pp. 770-772
-
-
Renaud, G.1
Stenzel, U.2
Maricic, T.3
Wiebe, V.4
Kelso, J.5
-
40
-
-
77951770756
-
BEDTools: a flexible suite of utilities for comparing genomic features
-
Quinlan AR, Hall IM. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics. 2010; 26:841-842
-
(2010)
Bioinformatics
, vol.26
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
41
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, Subgroup GPDP. The Sequence Alignment/Map format and SAMtools. Bioinformatics. 2009; 25:2078-2079
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
42
-
-
77956534324
-
ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data
-
Wang K, Li M, Hakonarson H. ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res. 2010; 38:e164-e164
-
(2010)
Nucleic Acids Res
, vol.38
, pp. e164-e164
-
-
Wang, K.1
Li, M.2
Hakonarson, H.3
-
43
-
-
84973418649
-
-
R Foundation for Statistical Computing. Vienna, Austria. 2005
-
Team RDC. R: A language and environment for statistical computing. ISBN 3-900051-07-0. R Foundation for Statistical Computing. Vienna, Austria, 2013. url: http://www.R-project.org). 2005
-
(2013)
R: A language and environment for statistical computing
-
-
|