-
1
-
-
84949556748
-
New Antarctic findings of Upper Cretaceous and lower Eocene loons (Aves: Gaviiformes)
-
&
-
Acosta Hospitaleche, C. & Gelfo, J. N. (2015). New Antarctic findings of Upper Cretaceous and lower Eocene loons (Aves: Gaviiformes). Annales de Paléontologie, 101, 315–324.
-
(2015)
Annales de Paléontologie
, vol.101
, pp. 315-324
-
-
Acosta Hospitaleche, C.1
Gelfo, J.N.2
-
2
-
-
84971569606
-
Hemiplasy: a new term in the lexicon of phylogenetics
-
&
-
Avise, J. C. & Robinson, T. J. (2008). Hemiplasy: a new term in the lexicon of phylogenetics. Systematic Biology, 57, 503–507.
-
(2008)
Systematic Biology
, vol.57
, pp. 503-507
-
-
Avise, J.C.1
Robinson, T.J.2
-
3
-
-
84880947338
-
Networks: expanding evolutionary thinking
-
&
-
Bapteste, E., van Iersel, L., Janke, A., Kelchner, S., Kelk, S., McInerney, J. O., Morrison, D. A., Nakhleh, L., Steel, M., Stougie, L. & Whitfield, J. (2013). Networks: expanding evolutionary thinking. Trends in Genetics, 29, 439–441.
-
(2013)
Trends in Genetics
, vol.29
, pp. 439-441
-
-
Bapteste, E.1
van Iersel, L.2
Janke, A.3
Kelchner, S.4
Kelk, S.5
McInerney, J.O.6
Morrison, D.A.7
Nakhleh, L.8
Steel, M.9
Stougie, L.10
Whitfield, J.11
-
4
-
-
84864489995
-
T-REX: a web server for inferring, validating and visualizing phylogenetic trees and networks
-
&
-
Boc, A., Diallo, A. B. & Makarenkov, V. (2012). T-REX: a web server for inferring, validating and visualizing phylogenetic trees and networks. Nucleic Acids Research, 40, W573–W579.
-
(2012)
Nucleic Acids Research
, vol.40
, pp. W573-W579
-
-
Boc, A.1
Diallo, A.B.2
Makarenkov, V.3
-
5
-
-
84873980394
-
Evolving perceptions on the antiquity of the modern avian tree
-
&, In, G. Dyke, &, G. Kaiser, (Eds), Chichester, John Wiley & Sons, Ltd
-
Brown, J. W. & Van Tuinen, M. 2011. Evolving perceptions on the antiquity of the modern avian tree. In G. Dyke & G. Kaiser(Eds) Living Dinosaurs: The Evolutionary History of Modern Birds (pp. 306–324). Chichester: John Wiley & Sons, Ltd.
-
(2011)
Living Dinosaurs: The Evolutionary History of Modern Birds
, pp. 306-324
-
-
Brown, J.W.1
Van Tuinen, M.2
-
7
-
-
40649089624
-
Introns outperform exons in analyses of basal avian phylogeny using clathrin heavy chain genes
-
&
-
Chojnowski, J. L., Kimball, R. T. & Braun, E. L. (2008). Introns outperform exons in analyses of basal avian phylogeny using clathrin heavy chain genes. Gene, 410, 89–96.
-
(2008)
Gene
, vol.410
, pp. 89-96
-
-
Chojnowski, J.L.1
Kimball, R.T.2
Braun, E.L.3
-
8
-
-
66049159777
-
Mosaic retroposon insertion patterns in placental mammals
-
&
-
Churakov, G., Kriegs, J. O., Baertsch, R., Zemann, A., Brosius, J. & Schmitz, J. (2009). Mosaic retroposon insertion patterns in placental mammals. Genome Research, 19, 868–875.
-
(2009)
Genome Research
, vol.19
, pp. 868-875
-
-
Churakov, G.1
Kriegs, J.O.2
Baertsch, R.3
Zemann, A.4
Brosius, J.5
Schmitz, J.6
-
9
-
-
85042023743
-
A new time tree reveals Earth history's imprint on the evolution of modern birds
-
&
-
Claramunt, S. & Cracraft, J. (2015). A new time tree reveals Earth history's imprint on the evolution of modern birds. Science Advances, 1, e1501005.
-
(2015)
Science Advances
, vol.1
-
-
Claramunt, S.1
Cracraft, J.2
-
10
-
-
84959420276
-
The unexpected survival of an ancient lineage of anseriform birds into the Neogene of Australia: the youngest record of Presbyornithidae
-
&
-
De Pietri, V. L., Scofield, R. P., Zelenkov, N., Boles, W. E. & Worthy, T. H. (2016). The unexpected survival of an ancient lineage of anseriform birds into the Neogene of Australia: the youngest record of Presbyornithidae. Royal Society Open Science, 3, 150635.
-
(2016)
Royal Society Open Science
, vol.3
, pp. 150635
-
-
De Pietri, V.L.1
Scofield, R.P.2
Zelenkov, N.3
Boles, W.E.4
Worthy, T.H.5
-
11
-
-
65649131928
-
Gene tree discordance, phylogenetic inference and the multispecies coalescent
-
&
-
Degnan, J. H. & Rosenberg, N. A. (2009). Gene tree discordance, phylogenetic inference and the multispecies coalescent. Trends in Ecology & Evolution, 24, 332–340.
-
(2009)
Trends in Ecology & Evolution
, vol.24
, pp. 332-340
-
-
Degnan, J.H.1
Rosenberg, N.A.2
-
12
-
-
79961039058
-
Testing for ancient admixture between closely related populations
-
&
-
Durand, E. Y., Patterson, N., Reich, D. & Slatkin, M. (2011). Testing for ancient admixture between closely related populations. Molecular Biology and Evolution, 28, 2239–2252.
-
(2011)
Molecular Biology and Evolution
, vol.28
, pp. 2239-2252
-
-
Durand, E.Y.1
Patterson, N.2
Reich, D.3
Slatkin, M.4
-
13
-
-
33845585115
-
Diversification of Neoaves: integration of molecular sequence data and fossils
-
&
-
Ericson, P. G. P., Anderson, C. L., Britton, T., Elzanowski, A., Johansson, U. S., Källersjö, M., Ohlson, J. I., Parsons, T. J., Zuccon, D. & Mayr, G. (2006). Diversification of Neoaves: integration of molecular sequence data and fossils. Biology Letters, 2, 543–547.
-
(2006)
Biology Letters
, vol.2
, pp. 543-547
-
-
Ericson, P.G.P.1
Anderson, C.L.2
Britton, T.3
Elzanowski, A.4
Johansson, U.S.5
Källersjö, M.6
Ohlson, J.I.7
Parsons, T.J.8
Zuccon, D.9
Mayr, G.10
-
14
-
-
9244239245
-
Parallel radiations in the primary clades of birds
-
&
-
Fain, M. G. & Houde, P. (2004). Parallel radiations in the primary clades of birds. Evolution, 58, 2558–2573.
-
(2004)
Evolution
, vol.58
, pp. 2558-2573
-
-
Fain, M.G.1
Houde, P.2
-
15
-
-
84959792503
-
The number of evolutionary trees
-
Felsenstein, J. (1978). The number of evolutionary trees. Systematic Biology, 27, 27–33.
-
(1978)
Systematic Biology
, vol.27
, pp. 27-33
-
-
Felsenstein, J.1
-
16
-
-
84865279799
-
New insights into family relationships within the avian superfamily Sylvioidea (Passeriformes) based on seven molecular markers
-
&
-
Fregin, S., Haase, M., Olsson, U. & Alström, P. (2012). New insights into family relationships within the avian superfamily Sylvioidea (Passeriformes) based on seven molecular markers. BMC Evolutionary Biology, 12, 1–12.
-
(2012)
BMC Evolutionary Biology
, vol.12
, pp. 1-12
-
-
Fregin, S.1
Haase, M.2
Olsson, U.3
Alström, P.4
-
17
-
-
33845873317
-
Mitochondrial genomes and avian phylogeny: complex characters and resolvability without explosive radiations
-
&
-
Gibb, G. C., Kardailsky, O., Kimball, R. T., Braun, E. L. & Penny, D. (2007). Mitochondrial genomes and avian phylogeny: complex characters and resolvability without explosive radiations. Molecular Biology and Evolution, 24, 269–280.
-
(2007)
Molecular Biology and Evolution
, vol.24
, pp. 269-280
-
-
Gibb, G.C.1
Kardailsky, O.2
Kimball, R.T.3
Braun, E.L.4
Penny, D.5
-
18
-
-
46449135061
-
A phylogenomic study of birds reveals their evolutionary history
-
&
-
Hackett, S. J., Kimball, R. T., Reddy, S., Bowie, R. C. K., Braun, E. L., Braun, M. J., Chojnowski, J. L., Cox, W. A., Han, K.-L., Harshman, J., Huddleston, C. J., Marks, B. D., Miglia, K. J., Moore, W. S., Sheldon, F. H., Steadman, D. W., Witt, C. C. & Yuri, T. (2008). A phylogenomic study of birds reveals their evolutionary history. Science, 320, 1763–1768.
-
(2008)
Science
, vol.320
, pp. 1763-1768
-
-
Hackett, S.J.1
Kimball, R.T.2
Reddy, S.3
Bowie, R.C.K.4
Braun, E.L.5
Braun, M.J.6
Chojnowski, J.L.7
Cox, W.A.8
Han, K.-L.9
Harshman, J.10
Huddleston, C.J.11
Marks, B.D.12
Miglia, K.J.13
Moore, W.S.14
Sheldon, F.H.15
Steadman, D.W.16
Witt, C.C.17
Yuri, T.18
-
19
-
-
84955733217
-
Irrational exuberance for resolved species trees
-
&
-
Hahn, M. W. & Nakhleh, L. (2016). Irrational exuberance for resolved species trees. Evolution, 70, 7–17.
-
(2016)
Evolution
, vol.70
, pp. 7-17
-
-
Hahn, M.W.1
Nakhleh, L.2
-
20
-
-
78649382339
-
Mammalian evolution may not be strictly bifurcating
-
&
-
Hallström, B. M. & Janke, A. (2010). Mammalian evolution may not be strictly bifurcating. Molecular Biology and Evolution, 27, 2804–2816.
-
(2010)
Molecular Biology and Evolution
, vol.27
, pp. 2804-2816
-
-
Hallström, B.M.1
Janke, A.2
-
21
-
-
79955390248
-
Are transposable element insertions homoplasy free?: an examination using the avian tree of life
-
&
-
Han, K.-L., Braun, E. L., Kimball, R. T., Reddy, S., Bowie, R. C. K., Braun, M. J., Chojnowski, J. L., Cox, W. A., Han, K.-L., Harshman, J., Huddleston, C. J., Marks, B. D., Miglia, K. J., Moore, W. S., Sheldon, F. H., Steadman, D. W., Witt, C. C. & Yuri, T. (2011). Are transposable element insertions homoplasy free?: an examination using the avian tree of life. Systematic Biology, 60, 375–386.
-
(2011)
Systematic Biology
, vol.60
, pp. 375-386
-
-
Han, K.-L.1
Braun, E.L.2
Kimball, R.T.3
Reddy, S.4
Bowie, R.C.K.5
Braun, M.J.6
Chojnowski, J.L.7
Cox, W.A.8
Han, K.-L.9
Harshman, J.10
Huddleston, C.J.11
Marks, B.D.12
Miglia, K.J.13
Moore, W.S.14
Sheldon, F.H.15
Steadman, D.W.16
Witt, C.C.17
Yuri, T.18
-
22
-
-
84913584858
-
Hybridization, introgression, and the nature of species boundaries
-
&
-
Harrison, R. G. & Larson, E. L. (2014). Hybridization, introgression, and the nature of species boundaries. Journal of Heredity, 105, 795–809.
-
(2014)
Journal of Heredity
, vol.105
, pp. 795-809
-
-
Harrison, R.G.1
Larson, E.L.2
-
23
-
-
0028002841
-
Patterns of speciation and limits to phylogenetic resolution
-
&
-
Hoelzer, G. A. & Meinick, D. J. (1994). Patterns of speciation and limits to phylogenetic resolution. Trends in Ecology & Evolution, 9, 104–107.
-
(1994)
Trends in Ecology & Evolution
, vol.9
, pp. 104-107
-
-
Hoelzer, G.A.1
Meinick, D.J.2
-
24
-
-
30744470609
-
Application of phylogenetic networks in evolutionary studies
-
&
-
Huson, D. H. & Bryant, D. (2006). Application of phylogenetic networks in evolutionary studies. Molecular Biology and Evolution, 23, 254–267.
-
(2006)
Molecular Biology and Evolution
, vol.23
, pp. 254-267
-
-
Huson, D.H.1
Bryant, D.2
-
25
-
-
84959058509
-
Perspectives from the Avian Phylogenomics Project: questions that can be answered with sequencing all genomes of a vertebrate class
-
Jarvis, E. D. (2016). Perspectives from the Avian Phylogenomics Project: questions that can be answered with sequencing all genomes of a vertebrate class. Annual Review of Animal Biosciences, 4, 45–59.
-
(2016)
Annual Review of Animal Biosciences
, vol.4
, pp. 45-59
-
-
Jarvis, E.D.1
-
26
-
-
84917708482
-
Whole genome analyses resolve the early branches in the tree of life of modern birds
-
&
-
Jarvis, E. D., Mirarab, S., Aberer, A. J., Li, B., Houde, P., Li, C., Ho, S. Y. W., Faircloth, B. C., Nabholz, B., Howard, J. T., Suh, A., Weber, C. C., da Fonseca, R. R., Li, J., Zhang, F., Li, H., Zhou, L., Narula, N., Liu, L., Ganapathy, G., Boussau, B., Bayzid, M. S., Zavidovych, V., Subramanian, S., Gabaldón, T., Capella-Gutiérrez, S., Huerta-Cepas, J., Rekepalli, B., Munch, K., Schierup, M., Lindow, B., Warren, W. C., Ray, D., Green, R. E., Bruford, M. W., Zhan, X., Dixon, A., Li, S., Li, N., Huang, Y., Derryberry, E. P., Bertelsen, M. F., Sheldon, F. H., Brumfield, R. T., Mello, C. V., Lovell, P. V., Wirthlin, M., Schneider, M. P. C., Prosdocimi, F., Samaniego, J. A., Velazquez, A. M. V., Alfaro-Núñez, A., Campos, P. F., Petersen, B., Sicheritz-Ponten, T., Pas, A., Bailey, T., Scofield, P., Bunce, M., Lambert, D. M., Zhou, Q., Perelman, P., Driskell, A. C., Shapiro, B., Xiong, Z., Zeng, Y., Liu, S., Li, Z., Liu, B., Wu, K., Xiao, J., Yinqi, X., Zheng, Q., Zhang, Y., Yang, H., Wang, J., Smeds, L., Rheindt, F. E., Braun, M., Fjeldsa, J., Orlando, L., Barker, F. K., Jønsson, K. A., Johnson, W., Koepfli, K.-P., O'Brien, S., Haussler, D., Ryder, O. A., Rahbek, C., Willerslev, E., Graves, G. R., Glenn, T. C., McCormack, J., Burt, D., Ellegren, H., Alström, P., Edwards, S. V., Stamatakis, A., Mindell, D. P., Cracraft, J., Braun, E. L., Warnow, T., Jun, W., Gilbert, M. T. P. & Zhang, G. (2014). Whole genome analyses resolve the early branches in the tree of life of modern birds. Science, 346, 1320–1331.
-
(2014)
Science
, vol.346
, pp. 1320-1331
-
-
Jarvis, E.D.1
Mirarab, S.2
Aberer, A.J.3
Li, B.4
Houde, P.5
Li, C.6
Ho, S.Y.W.7
Faircloth, B.C.8
Nabholz, B.9
Howard, J.T.10
Suh, A.11
Weber, C.C.12
da Fonseca, R.R.13
Li, J.14
Zhang, F.15
Li, H.16
Zhou, L.17
Narula, N.18
Liu, L.19
Ganapathy, G.20
Boussau, B.21
Bayzid, M.S.22
Zavidovych, V.23
Subramanian, S.24
Gabaldón, T.25
Capella-Gutiérrez, S.26
Huerta-Cepas, J.27
Rekepalli, B.28
Munch, K.29
Schierup, M.30
Lindow, B.31
Warren, W.C.32
Ray, D.33
Green, R.E.34
Bruford, M.W.35
Zhan, X.36
Dixon, A.37
Li, S.38
Li, N.39
Huang, Y.40
Derryberry, E.P.41
Bertelsen, M.F.42
Sheldon, F.H.43
Brumfield, R.T.44
Mello, C.V.45
Lovell, P.V.46
Wirthlin, M.47
Schneider, M.P.C.48
Prosdocimi, F.49
Samaniego, J.A.50
Velazquez, A.M.V.51
Alfaro-Núñez, A.52
Campos, P.F.53
Petersen, B.54
Sicheritz-Ponten, T.55
Pas, A.56
Bailey, T.57
Scofield, P.58
Bunce, M.59
Lambert, D.M.60
Zhou, Q.61
Perelman, P.62
Driskell, A.C.63
Shapiro, B.64
Xiong, Z.65
Zeng, Y.66
Liu, S.67
Li, Z.68
Liu, B.69
Wu, K.70
Xiao, J.71
Yinqi, X.72
Zheng, Q.73
Zhang, Y.74
Yang, H.75
Wang, J.76
Smeds, L.77
Rheindt, F.E.78
Braun, M.79
Fjeldsa, J.80
Orlando, L.81
Barker, F.K.82
Jønsson, K.A.83
Johnson, W.84
Koepfli, K.-P.85
O'Brien, S.86
Haussler, D.87
Ryder, O.A.88
Rahbek, C.89
Willerslev, E.90
Graves, G.R.91
Glenn, T.C.92
McCormack, J.93
Burt, D.94
Ellegren, H.95
Alström, P.96
Edwards, S.V.97
Stamatakis, A.98
Mindell, D.P.99
Cracraft, J.100
Braun, E.L.101
Warnow, T.102
Jun, W.103
Gilbert, M.T.P.104
Zhang, G.105
more..
-
27
-
-
84929606489
-
Phylogenomic analyses data of the Avian Phylogenomics Project
-
&
-
Jarvis, E. D., Mirarab, S., Aberer, A. J., Li, B., Houde, P., Li, C., Ho, S. Y. W., Faircloth, B. C., Nabholz, B., Howard, J. T., Suh, A., Weber, C. C., da Fonseca, R. R., Alfaro-Núñez, A., Narula, N., Liu, Burt, L., D., Ellegren, H., Edwards, S. V., Stamatakis, A., Mindell, D. P., Cracraft, J., Braun, E. L., Warnow, T., Jun, W., Gilbert, M. T. P. & Zhang, G. (2015). Phylogenomic analyses data of the Avian Phylogenomics Project. GigaScience, 4, 4.
-
(2015)
GigaScience
, vol.4
, pp. 4
-
-
Jarvis, E.D.1
Mirarab, S.2
Aberer, A.J.3
Li, B.4
Houde, P.5
Li, C.6
Ho, S.Y.W.7
Faircloth, B.C.8
Nabholz, B.9
Howard, J.T.10
Suh, A.11
Weber, C.C.12
da Fonseca, R.R.13
Alfaro-Núñez, A.14
Narula, N.15
Liu, B.16
Ellegren, H.17
Edwards, S.V.18
Stamatakis, A.19
Mindell, D.P.20
Cracraft, J.21
Braun, E.L.22
Warnow, T.23
Jun, W.24
Gilbert, M.T.P.25
Zhang, G.26
more..
-
28
-
-
33645850710
-
Phylogenomics: the beginning of incongruence?
-
&
-
Jeffroy, O., Brinkmann, H., Delsuc, F. & Philippe, H. (2006). Phylogenomics: the beginning of incongruence? Trends in Genetics, 22, 225–231.
-
(2006)
Trends in Genetics
, vol.22
, pp. 225-231
-
-
Jeffroy, O.1
Brinkmann, H.2
Delsuc, F.3
Philippe, H.4
-
29
-
-
0001525977
-
The average number of generations until fixation of a mutant gene in a finite population
-
&
-
Kimura, M. & Ohta, T. (1969). The average number of generations until fixation of a mutant gene in a finite population. Genetics, 61, 763–771.
-
(1969)
Genetics
, vol.61
, pp. 763-771
-
-
Kimura, M.1
Ohta, T.2
-
30
-
-
84938917560
-
Avian diversification patterns across the K-Pg boundary: influence of calibrations, datasets, and model misspecification
-
&
-
Ksepka, D. T. & Phillips, M. J. (2015). Avian diversification patterns across the K-Pg boundary: influence of calibrations, datasets, and model misspecification. Annals of the Missouri Botanical Garden, 100, 300–328.
-
(2015)
Annals of the Missouri Botanical Garden
, vol.100
, pp. 300-328
-
-
Ksepka, D.T.1
Phillips, M.J.2
-
31
-
-
84962074012
-
Incomplete lineage sorting and hybridization statistics for large-scale retroposon insertion data
-
&
-
Kuritzin, A., Kischka, T., Schmitz, J. & Churakov, G. (2016). Incomplete lineage sorting and hybridization statistics for large-scale retroposon insertion data. PLoS Computational Biology, 12, e1004812.
-
(2016)
PLoS Computational Biology
, vol.12
-
-
Kuritzin, A.1
Kischka, T.2
Schmitz, J.3
Churakov, G.4
-
32
-
-
84904966117
-
Bears in a forest of gene trees: Phylogenetic inference is complicated by incomplete lineage sorting and gene flow
-
&
-
Kutschera, V. E., Bidon, T., Hailer, F., Rodi, J. L., Fain, S. R. & Janke, A. (2014). Bears in a forest of gene trees: Phylogenetic inference is complicated by incomplete lineage sorting and gene flow. Molecular Biology and Evolution, 31, 2004–2017.
-
(2014)
Molecular Biology and Evolution
, vol.31
, pp. 2004-2017
-
-
Kutschera, V.E.1
Bidon, T.2
Hailer, F.3
Rodi, J.L.4
Fain, S.R.5
Janke, A.6
-
33
-
-
84923353165
-
Evolution of Darwin's finches and their beaks revealed by genome sequencing
-
&
-
Lamichhaney, S., Berglund, J., Almen, M. S., Maqbool, K., Grabherr, M., Martinez-Barrio, A., Promerova, M., Rubin, C.-J., Wang, C., Zamani, N., Grant, B. R., Grant, P. R., Webster, M. T. & Andersson, L. (2015). Evolution of Darwin's finches and their beaks revealed by genome sequencing. Nature, 518, 371–375.
-
(2015)
Nature
, vol.518
, pp. 371-375
-
-
Lamichhaney, S.1
Berglund, J.2
Almen, M.S.3
Maqbool, K.4
Grabherr, M.5
Martinez-Barrio, A.6
Promerova, M.7
Rubin, C.-J.8
Wang, C.9
Zamani, N.10
Grant, B.R.11
Grant, P.R.12
Webster, M.T.13
Andersson, L.14
-
34
-
-
80755128987
-
Multilocus resolution of phylogeny and timescale in the extant adaptive radiation of Hawaiian honeycreepers
-
&
-
Lerner, H. R. L., Meyer, M., James, H. F., Hofreiter, M. & Fleischer, R. C. (2011). Multilocus resolution of phylogeny and timescale in the extant adaptive radiation of Hawaiian honeycreepers. Current Biology, 21, 1838–1844.
-
(2011)
Current Biology
, vol.21
, pp. 1838-1844
-
-
Lerner, H.R.L.1
Meyer, M.2
James, H.F.3
Hofreiter, M.4
Fleischer, R.C.5
-
35
-
-
19044373497
-
Polytomies and Bayesian phylogenetic inference
-
&
-
Lewis, P. O., Holder, M. T. & Holsinger, K. E. (2005). Polytomies and Bayesian phylogenetic inference. Systematic Biology, 54, 241–253.
-
(2005)
Systematic Biology
, vol.54
, pp. 241-253
-
-
Lewis, P.O.1
Holder, M.T.2
Holsinger, K.E.3
-
36
-
-
84978792929
-
Detecting the anomaly zone in species trees and evidence for a misleading signal in higher-level skink phylogeny (Squamata: Scincidae)
-
&
-
Linkem, C. W., Minin, V. N. & Leaché, A. D. (2016). Detecting the anomaly zone in species trees and evidence for a misleading signal in higher-level skink phylogeny (Squamata: Scincidae). Systematic Biology, 65, 465–477.
-
(2016)
Systematic Biology
, vol.65
, pp. 465-477
-
-
Linkem, C.W.1
Minin, V.N.2
Leaché, A.D.3
-
37
-
-
84949317694
-
Estimating phylogenetic trees from genome-scale data
-
&
-
Liu, L., Xi, Z., Wu, S., Davis, C. C. & Edwards, S. V. (2015). Estimating phylogenetic trees from genome-scale data. Annals of the New York Academy of Sciences, 1360, 36–53.
-
(2015)
Annals of the New York Academy of Sciences
, vol.1360
, pp. 36-53
-
-
Liu, L.1
Xi, Z.2
Wu, S.3
Davis, C.C.4
Edwards, S.V.5
-
38
-
-
33846151652
-
Higher-order phylogeny of modern birds (Theropoda, Aves: Neornithes) based on comparative anatomy II. Analysis and discussion
-
&
-
Livezey, B. C. & Zusi, R. L. (2007). Higher-order phylogeny of modern birds (Theropoda, Aves: Neornithes) based on comparative anatomy II. Analysis and discussion. Zoological Journal of the Linnean Society, 149, 1–95.
-
(2007)
Zoological Journal of the Linnean Society
, vol.149
, pp. 1-95
-
-
Livezey, B.C.1
Zusi, R.L.2
-
39
-
-
0031504952
-
Gene trees in species trees
-
Maddison, W. P. (1997). Gene trees in species trees. Systematic Biology, 46, 523–536.
-
(1997)
Systematic Biology
, vol.46
, pp. 523-536
-
-
Maddison, W.P.1
-
40
-
-
33644606488
-
Inferring phylogeny despite incomplete lineage sorting
-
&
-
Maddison, W. P. & Knowles, L. L. (2006). Inferring phylogeny despite incomplete lineage sorting. Systematic Biology, 55, 21–30.
-
(2006)
Systematic Biology
, vol.55
, pp. 21-30
-
-
Maddison, W.P.1
Knowles, L.L.2
-
41
-
-
84922375154
-
Evaluating the use of ABBA–BABA statistics to locate introgressed loci
-
&
-
Martin, S. H., Davey, J. W. & Jiggins, C. D. (2015). Evaluating the use of ABBA–BABA statistics to locate introgressed loci. Molecular Biology and Evolution, 32, 244–257.
-
(2015)
Molecular Biology and Evolution
, vol.32
, pp. 244-257
-
-
Martin, S.H.1
Davey, J.W.2
Jiggins, C.D.3
-
42
-
-
78650953471
-
Metaves, Mirandornithes, Strisores and other novelties – a critical review of the higher-level phylogeny of neornithine birds
-
Mayr, G. (2011). Metaves, Mirandornithes, Strisores and other novelties – a critical review of the higher-level phylogeny of neornithine birds. Journal of Zoological Systematics and Evolutionary Research, 49, 58–76.
-
(2011)
Journal of Zoological Systematics and Evolutionary Research
, vol.49
, pp. 58-76
-
-
Mayr, G.1
-
43
-
-
84873860010
-
A phylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencing
-
&
-
McCormack, J. E., Harvey, M. G., Faircloth, B. C., Crawford, N. G., Glenn, T. C. & Brumfield, R. T. (2013). A phylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencing. PLoS ONE, 8, e54848.
-
(2013)
PLoS ONE
, vol.8
-
-
McCormack, J.E.1
Harvey, M.G.2
Faircloth, B.C.3
Crawford, N.G.4
Glenn, T.C.5
Brumfield, R.T.6
-
44
-
-
84979263803
-
Analysis of a rapid evolutionary radiation using ultraconserved elements (UCEs): Evidence for a bias in some multispecies coalescent methods
-
&
-
Meiklejohn, K. A., Faircloth, B. C., Glenn, T. C., Kimball, R. T. & Braun, E. L. (2016). Analysis of a rapid evolutionary radiation using ultraconserved elements (UCEs): Evidence for a bias in some multispecies coalescent methods. Systematic Biology, 65, 612–627.
-
(2016)
Systematic Biology
, vol.65
, pp. 612-627
-
-
Meiklejohn, K.A.1
Faircloth, B.C.2
Glenn, T.C.3
Kimball, R.T.4
Braun, E.L.5
-
45
-
-
84979294598
-
Gene tree discordance causes apparent substitution rate variation
-
&
-
Mendes, F. K. & Hahn, M. W. (2016). Gene tree discordance causes apparent substitution rate variation. Systematic Biology, 65, 711–721.
-
(2016)
Systematic Biology
, vol.65
, pp. 711-721
-
-
Mendes, F.K.1
Hahn, M.W.2
-
46
-
-
84918820633
-
A tribal level phylogeny of Lake Tanganyika cichlid fishes based on a genomic multi-marker approach
-
&
-
Meyer, B. S., Matschiner, M. & Salzburger, W. (2015). A tribal level phylogeny of Lake Tanganyika cichlid fishes based on a genomic multi-marker approach. Molecular Phylogenetics and Evolution, 83, 56–71.
-
(2015)
Molecular Phylogenetics and Evolution
, vol.83
, pp. 56-71
-
-
Meyer, B.S.1
Matschiner, M.2
Salzburger, W.3
-
47
-
-
84883228686
-
Heterogeneous models place the root of the placental mammal phylogeny
-
&
-
Morgan, C. C., Foster, P. G., Webb, A. E., Pisani, D., McInerney, J. O. & O'Connell, M. J. (2013). Heterogeneous models place the root of the placental mammal phylogeny. Molecular Biology and Evolution, 30, 2145–2156.
-
(2013)
Molecular Biology and Evolution
, vol.30
, pp. 2145-2156
-
-
Morgan, C.C.1
Foster, P.G.2
Webb, A.E.3
Pisani, D.4
McInerney, J.O.5
O'Connell, M.J.6
-
48
-
-
60549089187
-
Explosive Pleistocene diversification and hemispheric expansion of a “great speciator
-
&
-
Moyle, R. G., Filardi, C. E., Smith, C. E. & Diamond, J. (2009). Explosive Pleistocene diversification and hemispheric expansion of a “great speciator”. Proceedings of the National Academy of Sciences, 106, 1863–1868.
-
(2009)
Proceedings of the National Academy of Sciences
, vol.106
, pp. 1863-1868
-
-
Moyle, R.G.1
Filardi, C.E.2
Smith, C.E.3
Diamond, J.4
-
49
-
-
34147184456
-
Using genomic data to unravel the root of the placental mammal phylogeny
-
&
-
Murphy, W. J., Pringle, T. H., Crider, T. A., Springer, M. S. & Miller, W. (2007). Using genomic data to unravel the root of the placental mammal phylogeny. Genome Research, 17, 413–421.
-
(2007)
Genome Research
, vol.17
, pp. 413-421
-
-
Murphy, W.J.1
Pringle, T.H.2
Crider, T.A.3
Springer, M.S.4
Miller, W.5
-
50
-
-
84929607193
-
Temporal dynamics of avian populations during Pleistocene revealed by whole-genome sequences
-
&
-
Nadachowska-Brzyska, K., Li, C., Smeds, L., Zhang, G. & Ellegren, H. (2015). Temporal dynamics of avian populations during Pleistocene revealed by whole-genome sequences. Current Biology, 25, 1375–1380.
-
(2015)
Current Biology
, vol.25
, pp. 1375-1380
-
-
Nadachowska-Brzyska, K.1
Li, C.2
Smeds, L.3
Zhang, G.4
Ellegren, H.5
-
51
-
-
84977854666
-
PSMC analysis of effective population sizes in molecular ecology and its application to black-and-white Ficedula flycatchers
-
&
-
Nadachowska-Brzyska, K., Burri, R., Smeds, L. & Ellegren, H. (2016). PSMC analysis of effective population sizes in molecular ecology and its application to black-and-white Ficedula flycatchers. Molecular Ecology, 25, 1058–1072.
-
(2016)
Molecular Ecology
, vol.25
, pp. 1058-1072
-
-
Nadachowska-Brzyska, K.1
Burri, R.2
Smeds, L.3
Ellegren, H.4
-
52
-
-
84946127857
-
Resolving evolutionary relationships in closely related species with whole-genome sequencing data
-
&
-
Nater, A., Burri, R., Kawakami, T., Smeds, L. & Ellegren, H. (2015). Resolving evolutionary relationships in closely related species with whole-genome sequencing data. Systematic Biology, 64, 1000–1017.
-
(2015)
Systematic Biology
, vol.64
, pp. 1000-1017
-
-
Nater, A.1
Burri, R.2
Kawakami, T.3
Smeds, L.4
Ellegren, H.5
-
53
-
-
65249116423
-
Retroposon analysis and recent geological data suggest near-simultaneous divergence of the three superorders of mammals
-
&
-
Nishihara, H., Maruyama, S. & Okada, N. (2009). Retroposon analysis and recent geological data suggest near-simultaneous divergence of the three superorders of mammals. Proceedings of the National Academy of Sciences, 106, 5235–5240.
-
(2009)
Proceedings of the National Academy of Sciences
, vol.106
, pp. 5235-5240
-
-
Nishihara, H.1
Maruyama, S.2
Okada, N.3
-
54
-
-
52249112763
-
Accounting for phylogenetic uncertainty in biogeography: A Bayesian approach to dispersal-vicariance analysis of the thrushes (Aves: Turdus)
-
&
-
Nylander, J. A. A., Olsson, U., Alström, P. & Sanmartín, I. (2008). Accounting for phylogenetic uncertainty in biogeography: A Bayesian approach to dispersal-vicariance analysis of the thrushes (Aves: Turdus). Systematic Biology, 57, 257–268.
-
(2008)
Systematic Biology
, vol.57
, pp. 257-268
-
-
Nylander, J.A.A.1
Olsson, U.2
Alström, P.3
Sanmartín, I.4
-
55
-
-
84873492863
-
The placental mammal ancestor and the post–K-Pg radiation of placentals
-
&
-
O'Leary, M. A., Bloch, J. I., Flynn, J. J., Gaudin, T. J., Giallombardo, A., Giannini, N. P., Goldberg, S. L., Kraatz, B. P., Luo, Z.-X., Meng, J., Ni, X., Novacek, M. J., Perini, F. A., Randall, Z. S., Rougier, G. W., Sargis, E. J., Silcox, M. T., Simmons, N. B., Spaulding, M., Velazco, P. M., Weksler, M., Wible, J. R. & Cirranello, A. L. (2013). The placental mammal ancestor and the post–K-Pg radiation of placentals. Science, 339, 662–667.
-
(2013)
Science
, vol.339
, pp. 662-667
-
-
O'Leary, M.A.1
Bloch, J.I.2
Flynn, J.J.3
Gaudin, T.J.4
Giallombardo, A.5
Giannini, N.P.6
Goldberg, S.L.7
Kraatz, B.P.8
Luo, Z.-X.9
Meng, J.10
Ni, X.11
Novacek, M.J.12
Perini, F.A.13
Randall, Z.S.14
Rougier, G.W.15
Sargis, E.J.16
Silcox, M.T.17
Simmons, N.B.18
Spaulding, M.19
Velazco, P.M.20
Weksler, M.21
Wible, J.R.22
Cirranello, A.L.23
more..
-
56
-
-
79957516618
-
Evolution of modern birds revealed by mitogenomics: timing the radiation and origin of major orders
-
&
-
Pacheco, M. A., Battistuzzi, F. U., Lentino, M., Aguilar, R. F., Kumar, S. & Escalante, A. A. (2011). Evolution of modern birds revealed by mitogenomics: timing the radiation and origin of major orders. Molecular Biology and Evolution, 28, 1927–1942.
-
(2011)
Molecular Biology and Evolution
, vol.28
, pp. 1927-1942
-
-
Pacheco, M.A.1
Battistuzzi, F.U.2
Lentino, M.3
Aguilar, R.F.4
Kumar, S.5
Escalante, A.A.6
-
57
-
-
84931580576
-
Detection and polarization of introgression in a five-taxon phylogeny
-
&
-
Pease, J. B. & Hahn, M. W. (2015). Detection and polarization of introgression in a five-taxon phylogeny. Systematic Biology, 64, 651–662.
-
(2015)
Systematic Biology
, vol.64
, pp. 651-662
-
-
Pease, J.B.1
Hahn, M.W.2
-
58
-
-
84955703917
-
Phylogenomics reveals three sources of adaptive variation during a rapid radiation
-
&
-
Pease, J. B., Haak, D. C., Hahn, M. W. & Moyle, L. C. (2016). Phylogenomics reveals three sources of adaptive variation during a rapid radiation. PLoS Biology, 14, e1002379.
-
(2016)
PLoS Biology
, vol.14
-
-
Pease, J.B.1
Haak, D.C.2
Hahn, M.W.3
Moyle, L.C.4
-
59
-
-
79953716259
-
Resolving difficult phylogenetic questions: Why more sequences are not enough
-
#x0026;
-
Philippe, H., Brinkmann, H., Lavrov, D. V., Littlewood, D. T. J., Manuel, M., Wörheide, G., & Baurain, D. (2011). Resolving difficult phylogenetic questions: Why more sequences are not enough. PLoS Biology, 9, e1000602.
-
(2011)
PLoS Biology
, vol.9
-
-
Philippe, H.1
Brinkmann, H.2
Lavrov, D.V.3
Littlewood, D.T.J.4
Manuel, M.5
Wörheide, G.6
Baurain, D.7
-
60
-
-
84979859184
-
Targeted capture of phylogenetically informative Ves SINE insertions in genus Myotis
-
&
-
Platt, R. N., Zhang, Y., Witherspoon, D. J., Xing, J., Suh, A., Keith, M. S., Jorde, L. B., Stevens, R. D. & Ray, D. A. (2015). Targeted capture of phylogenetically informative Ves SINE insertions in genus Myotis. Genome Biology and Evolution, 7, 1664–1675.
-
(2015)
Genome Biology and Evolution
, vol.7
, pp. 1664-1675
-
-
Platt, R.N.1
Zhang, Y.2
Witherspoon, D.J.3
Xing, J.4
Suh, A.5
Keith, M.S.6
Jorde, L.B.7
Stevens, R.D.8
Ray, D.A.9
-
61
-
-
1642401431
-
Birds in a bush: five genes indicate explosive evolution of avian orders
-
&
-
Poe, S. & Chubb, A. L. (2004). Birds in a bush: five genes indicate explosive evolution of avian orders. Evolution, 58, 404–415.
-
(2004)
Evolution
, vol.58
, pp. 404-415
-
-
Poe, S.1
Chubb, A.L.2
-
62
-
-
58449087343
-
Toward resolving deep Neoaves phylogeny: data, signal enhancement, and priors
-
&
-
Pratt, R. C., Gibb, G. C., Morgan-Richards, M., Phillips, M. J., Hendy, M. D. & Penny, D. (2009). Toward resolving deep Neoaves phylogeny: data, signal enhancement, and priors. Molecular Biology and Evolution, 26, 313–326.
-
(2009)
Molecular Biology and Evolution
, vol.26
, pp. 313-326
-
-
Pratt, R.C.1
Gibb, G.C.2
Morgan-Richards, M.3
Phillips, M.J.4
Hendy, M.D.5
Penny, D.6
-
63
-
-
84944911288
-
A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing
-
#x0026;
-
Prum, R. O., Berv, J. S., Dornburg, A., Field, D. J., Townsend, J. P., Lemmon, E. M., & Lemmon, A. R. (2015). A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing. Nature, 526, 569–573.
-
(2015)
Nature
, vol.526
, pp. 569-573
-
-
Prum, R.O.1
Berv, J.S.2
Dornburg, A.3
Field, D.J.4
Townsend, J.P.5
Lemmon, E.M.6
Lemmon, A.R.7
-
64
-
-
33847180610
-
SINEs of a nearly perfect character
-
&
-
Ray, D. A., Xing, J., Salem, A.-H. & Batzer, M. A. (2006). SINEs of a nearly perfect character. Systematic Biology, 55, 928–935.
-
(2006)
Systematic Biology
, vol.55
, pp. 928-935
-
-
Ray, D.A.1
Xing, J.2
Salem, A.-H.3
Batzer, M.A.4
-
65
-
-
84893874728
-
Neither phylogenomic nor palaeontological data support a Palaeogene origin of placental mammals
-
&
-
dos Reis, M., Donoghue, P. C. J. & Yang, Z. (2014). Neither phylogenomic nor palaeontological data support a Palaeogene origin of placental mammals. Biology Letters, 10, 20131003.
-
(2014)
Biology Letters
, vol.10
, pp. 20131003
-
-
dos Reis, M.1
Donoghue, P.C.J.2
Yang, Z.3
-
66
-
-
84973364667
-
LS3: A method for improving phylogenomic inferences when evolutionary rates are heterogeneous among taxa
-
&
-
Rivera-Rivera, C. J. & Montoya-Burgos, J. I. (2016). LS3: A method for improving phylogenomic inferences when evolutionary rates are heterogeneous among taxa. Molecular Biology and Evolution, 33, 1625–1634.
-
(2016)
Molecular Biology and Evolution
, vol.33
, pp. 1625-1634
-
-
Rivera-Rivera, C.J.1
Montoya-Burgos, J.I.2
-
67
-
-
84883229050
-
Less is more in mammalian phylogenomics: AT-rich genes minimize tree conflicts and unravel the root of placental mammals
-
&
-
Romiguier, J., Ranwez, V., Delsuc, F., Galtier, N. & Douzery, E. J. P. (2013). Less is more in mammalian phylogenomics: AT-rich genes minimize tree conflicts and unravel the root of placental mammals. Molecular Biology and Evolution, 30, 2134–2144.
-
(2013)
Molecular Biology and Evolution
, vol.30
, pp. 2134-2144
-
-
Romiguier, J.1
Ranwez, V.2
Delsuc, F.3
Galtier, N.4
Douzery, E.J.P.5
-
68
-
-
84890335523
-
Discordance of species trees with their most likely gene trees: a unifying principle
-
Rosenberg, N. A. (2013). Discordance of species trees with their most likely gene trees: a unifying principle. Molecular Biology and Evolution, 30, 2709–2713.
-
(2013)
Molecular Biology and Evolution
, vol.30
, pp. 2709-2713
-
-
Rosenberg, N.A.1
-
69
-
-
84878113118
-
Inferring ancient divergences requires genes with strong phylogenetic signals
-
&
-
Salichos, L. & Rokas, A. (2013). Inferring ancient divergences requires genes with strong phylogenetic signals. Nature, 497, 327–331.
-
(2013)
Nature
, vol.497
, pp. 327-331
-
-
Salichos, L.1
Rokas, A.2
-
70
-
-
84898641369
-
Novel information theory-based measures for quantifying incongruence among phylogenetic trees
-
&
-
Salichos, L., Stamatakis, A. & Rokas, A. (2014). Novel information theory-based measures for quantifying incongruence among phylogenetic trees. Molecular Biology and Evolution, 31, 1261–1271.
-
(2014)
Molecular Biology and Evolution
, vol.31
, pp. 1261-1271
-
-
Salichos, L.1
Stamatakis, A.2
Rokas, A.3
-
71
-
-
22844432698
-
A name for the flamingo–grebe clade
-
Sangster, G. (2005). A name for the flamingo–grebe clade. Ibis, 147, 612–615.
-
(2005)
Ibis
, vol.147
, pp. 612-615
-
-
Sangster, G.1
-
72
-
-
1642375725
-
Hybridization and adaptive radiation
-
Seehausen, O. (2004). Hybridization and adaptive radiation. Trends in Ecology & Evolution, 19, 198–207.
-
(2004)
Trends in Ecology & Evolution
, vol.19
, pp. 198-207
-
-
Seehausen, O.1
-
73
-
-
4544222472
-
SINEs of speciation: tracking lineages with retroposons
-
&
-
Shedlock, A. M., Takahashi, K. & Okada, N. (2004). SINEs of speciation: tracking lineages with retroposons. Trends in Ecology & Evolution, 19, 545–553.
-
(2004)
Trends in Ecology & Evolution
, vol.19
, pp. 545-553
-
-
Shedlock, A.M.1
Takahashi, K.2
Okada, N.3
-
76
-
-
84962408959
-
Inferring phylogenetic networks with maximum pseudolikelihood under incomplete lineage sorting
-
&
-
Solís-Lemus, C. & Ané, C. (2016). Inferring phylogenetic networks with maximum pseudolikelihood under incomplete lineage sorting. PLoS Genetics, 12, e1005896.
-
(2016)
PLoS Genetics
, vol.12
-
-
Solís-Lemus, C.1
Ané, C.2
-
77
-
-
84881226752
-
Technical comment on “The placental mammal ancestor and the post–K-Pg radiation of placentals
-
&
-
Springer, M. S., Meredith, R. W., Teeling, E. C. & Murphy, W. J. (2013). Technical comment on “The placental mammal ancestor and the post–K-Pg radiation of placentals”. Science, 341, 613–613.
-
(2013)
Science
, vol.341
, pp. 613
-
-
Springer, M.S.1
Meredith, R.W.2
Teeling, E.C.3
Murphy, W.J.4
-
78
-
-
80052392767
-
Mesozoic retroposons reveal parrots as the closest living relatives of passerine birds
-
&
-
Suh, A., Paus, M., Kiefmann, M., Churakov, G., Franke, F. A., Brosius, J., Kriegs, J. O. & Schmitz, J. (2011). Mesozoic retroposons reveal parrots as the closest living relatives of passerine birds. Nature Communications, 2, 443.
-
(2011)
Nature Communications
, vol.2
, pp. 443
-
-
Suh, A.1
Paus, M.2
Kiefmann, M.3
Churakov, G.4
Franke, F.A.5
Brosius, J.6
Kriegs, J.O.7
Schmitz, J.8
-
79
-
-
84863634273
-
A universal method for the study of CR1 retroposons in nonmodel bird genomes
-
&
-
Suh, A., Kriegs, J. O., Donnellan, S., Brosius, J. & Schmitz, J. (2012). A universal method for the study of CR1 retroposons in nonmodel bird genomes. Molecular Biology and Evolution, 29, 2899–2903.
-
(2012)
Molecular Biology and Evolution
, vol.29
, pp. 2899-2903
-
-
Suh, A.1
Kriegs, J.O.2
Donnellan, S.3
Brosius, J.4
Schmitz, J.5
-
80
-
-
84940641284
-
The dynamics of incomplete lineage sorting across the ancient adaptive radiation of neoavian birds
-
&
-
Suh, A., Smeds, L. & Ellegren, H. (2015). The dynamics of incomplete lineage sorting across the ancient adaptive radiation of neoavian birds. PLoS Biology, 13, e1002224.
-
(2015)
PLoS Biology
, vol.13
-
-
Suh, A.1
Smeds, L.2
Ellegren, H.3
-
81
-
-
0034818757
-
Retroposition of the AFC family of SINEs (Short Interspersed Repetitive Elements) before and during the adaptive radiation of cichlid fishes in Lake Malawi and related inferences about phylogeny
-
&
-
Takahashi, K., Nishida, M., Yuma, M. & Okada, N. (2001). Retroposition of the AFC family of SINEs (Short Interspersed Repetitive Elements) before and during the adaptive radiation of cichlid fishes in Lake Malawi and related inferences about phylogeny. Journal of Molecular Evolution, 53, 496–507.
-
(2001)
Journal of Molecular Evolution
, vol.53
, pp. 496-507
-
-
Takahashi, K.1
Nishida, M.2
Yuma, M.3
Okada, N.4
-
82
-
-
85007247334
-
The interrelationships of placental mammals and the limits of phylogenetic inference
-
&
-
Tarver, J. E., dos Reis, M., Mirarab, S., Moran, R. J., Parker, S., O'Reilly, J. E., King, B. L., O'Connell, M. J., Asher, R. J., Warnow, T., Peterson, K. J., Donoghue, P. C. J. & Pisani, D. (2016). The interrelationships of placental mammals and the limits of phylogenetic inference. Genome Biology and Evolution, 8, 330–344.
-
(2016)
Genome Biology and Evolution
, vol.8
, pp. 330-344
-
-
Tarver, J.E.1
dos Reis, M.2
Mirarab, S.3
Moran, R.J.4
Parker, S.5
O'Reilly, J.E.6
King, B.L.7
O'Connell, M.J.8
Asher, R.J.9
Warnow, T.10
Peterson, K.J.11
Donoghue, P.C.J.12
Pisani, D.13
-
83
-
-
79957476681
-
Advanced birds (Neoaves)
-
In, S. B. Hedges, &, S. Kumar, (Eds), New York, Oxford University Press
-
vanTuinen, M. (2009). Advanced birds (Neoaves). In S. B. Hedges & S. Kumar (Eds) The Timetree of Life (pp. 419–422). New York: Oxford University Press.
-
(2009)
The Timetree of Life
, pp. 419-422
-
-
van Tuinen, M.1
-
84
-
-
0034929939
-
Convergence and divergence in the evolution of aquatic birds
-
&, 1350
-
van Tuinen, M., Butvill, D. B., Kirsch, J. A. W. & Hedges, S. B. (2001). Convergence and divergence in the evolution of aquatic birds. Proceedings of the Royal Society B, 268, 1345–19 1350.
-
(2001)
Proceedings of the Royal Society B
, vol.268
, pp. 1319-1345
-
-
van Tuinen, M.1
Butvill, D.B.2
Kirsch, J.A.W.3
Hedges, S.B.4
-
85
-
-
84929008310
-
Examining phylogenetic relationships among gibbon genera using whole genome sequence data using an approximate Bayesian computation approach
-
&
-
Veeramah, K. R., Woerner, A. E., Johnstone, L., Gut, I., Gut, M., Marques-Bonet, T., Carbone, L., Wall, J. D. & Hammer, M. F. (2015). Examining phylogenetic relationships among gibbon genera using whole genome sequence data using an approximate Bayesian computation approach. Genetics, 200, 295–308.
-
(2015)
Genetics
, vol.200
, pp. 295-308
-
-
Veeramah, K.R.1
Woerner, A.E.2
Johnstone, L.3
Gut, I.4
Gut, M.5
Marques-Bonet, T.6
Carbone, L.7
Wall, J.D.8
Hammer, M.F.9
-
86
-
-
0032805794
-
Polytomies and the power of phylogenetic inference
-
&
-
Walsh, H. E., Kidd, M. G., Moum, T. & Friesen, V. L. (1999). Polytomies and the power of phylogenetic inference. Evolution, 53, 932–937.
-
(1999)
Evolution
, vol.53
, pp. 932-937
-
-
Walsh, H.E.1
Kidd, M.G.2
Moum, T.3
Friesen, V.L.4
-
87
-
-
84855873417
-
Testing hypotheses about the sister group of the Passeriformes using an independent 30-locus dataset
-
&
-
Wang, N., Braun, E. L. & Kimball, R. T. (2012). Testing hypotheses about the sister group of the Passeriformes using an independent 30-locus dataset. Molecular Biology and Evolution, 29, 737–750.
-
(2012)
Molecular Biology and Evolution
, vol.29
, pp. 737-750
-
-
Wang, N.1
Braun, E.L.2
Kimball, R.T.3
-
89
-
-
34547749902
-
Fair-balance paradox, star-tree paradox, and Bayesian phylogenetics
-
Yang, Z. (2007). Fair-balance paradox, star-tree paradox, and Bayesian phylogenetics. Molecular Biology and Evolution, 24, 1639–1655.
-
(2007)
Molecular Biology and Evolution
, vol.24
, pp. 1639-1655
-
-
Yang, Z.1
-
90
-
-
22844452772
-
Branch-length prior influences Bayesian posterior probability of phylogeny
-
&
-
Yang, Z. & Rannala, B. (2005). Branch-length prior influences Bayesian posterior probability of phylogeny. Systematic Biology, 54, 455–470.
-
(2005)
Systematic Biology
, vol.54
, pp. 455-470
-
-
Yang, Z.1
Rannala, B.2
-
91
-
-
84882780148
-
Parsimonious inference of hybridization in the presence of incomplete lineage sorting
-
&
-
Yu, Y., Barnett, R. M. & Nakhleh, L. (2013). Parsimonious inference of hybridization in the presence of incomplete lineage sorting. Systematic Biology, 62, 738–751.
-
(2013)
Systematic Biology
, vol.62
, pp. 738-751
-
-
Yu, Y.1
Barnett, R.M.2
Nakhleh, L.3
-
92
-
-
84919475579
-
Maximum likelihood inference of reticulate evolutionary histories
-
&
-
Yu, Y., Dong, J., Liu, K. J. & Nakhleh, L. (2014). Maximum likelihood inference of reticulate evolutionary histories. Proceedings of the National Academy of Sciences, 111, 16448–16453.
-
(2014)
Proceedings of the National Academy of Sciences
, vol.111
, pp. 16448-16453
-
-
Yu, Y.1
Dong, J.2
Liu, K.J.3
Nakhleh, L.4
-
93
-
-
84884350638
-
Parsimony and model-based analyses of indels in avian nuclear genes reveal congruent and incongruent phylogenetic signals
-
&
-
Yuri, T., Kimball, R. T., Harshman, J., Bowie, R. C. K., Braun, M. J., Chojnowski, J. L., Han, K.-L., Hackett, S. J., Huddleston, C. J., Moore, W. S., Reddy, S., Sheldon, F. H., Steadman, D. W., Witt, C. C. & Braun, E. L. (2013). Parsimony and model-based analyses of indels in avian nuclear genes reveal congruent and incongruent phylogenetic signals. Biology, 2, 419–444.
-
(2013)
Biology
, vol.2
, pp. 419-444
-
-
Yuri, T.1
Kimball, R.T.2
Harshman, J.3
Bowie, R.C.K.4
Braun, M.J.5
Chojnowski, J.L.6
Han, K.-L.7
Hackett, S.J.8
Huddleston, C.J.9
Moore, W.S.10
Reddy, S.11
Sheldon, F.H.12
Steadman, D.W.13
Witt, C.C.14
Braun, E.L.15
-
94
-
-
84917678595
-
Comparative genomics reveals insights into avian genome evolution and adaptation
-
&
-
Zhang, G., Li, C., Li, Q., Li, B., Larkin, D. M., Lee, C., Storz, J. F., Antunes, A., Greenwold, M. J., Meredith, R. W., Ödeen, A., Cui, J., Zhou, Q., Xu, L., Pan, H., Wang, Z., Jin, L., Zhang, P., Hu, H., Yang, W., Hu, J., Xiao, J., Yang, Z., Liu, Y., Xie, Q., Yu, H., Lian, J., Wen, P., Zhang, F., Li, H., Zeng, Y., Xiong, Z., Liu, S., Zhou, L., Huang, Z., An, N., Wang, J., Zheng, Q., Xiong, Y., Wang, G., Wang, B., Wang, J., Fan, Y., da Fonseca, R. R., Alfaro-Núñez, A., Schubert, M., Orlando, L., Mourier, T., Howard, J. T., Ganapathy, G., Pfenning, A., Whitney, O., Rivas, M. V., Hara, E., Smith, J., Farré, M., Narayan, J., Slavov, G., Romanov, M. N., Borges, R., Machado, J. P., Khan, I., Springer, M. S., Gatesy, J., Hoffmann, F. G., Opazo, J. C., Håstad, O., Sawyer, R. H., Kim, H., Kim, K.-W., Kim, H. J., Cho, S., Li, N., Huang, Y., Bruford, M. W., Zhan, X., Dixon, A., Bertelsen, M. F., Derryberry, E., Warren, W., Wilson, R. K., Li, S., Ray, D. A., Green, R. E., O'Brien, S. J., Griffin, D., Johnson, W. E., Haussler, D., Ryder, O. A., Willerslev, E., Graves, G. R., Alström, P., Fjeldså, J., Mindell, D. P., Edwards, S. V., Braun, E. L., Rahbek, C., Burt, D. W., Houde, P., Zhang, Y., Yang, H., Wang, J., Avian Genome Consortium, Jarvis, E. D., Gilbert, M. T. P. & Wang, J. (2014). Comparative genomics reveals insights into avian genome evolution and adaptation. Science, 346, 1311–1320.
-
(2014)
Science
, vol.346
, pp. 1311-1320
-
-
Zhang, G.1
Li, C.2
Li, Q.3
Li, B.4
Larkin, D.M.5
Lee, C.6
Storz, J.F.7
Antunes, A.8
Greenwold, M.J.9
Meredith, R.W.10
Ödeen, A.11
Cui, J.12
Zhou, Q.13
Xu, L.14
Pan, H.15
Wang, Z.16
Jin, L.17
Zhang, P.18
Hu, H.19
Yang, W.20
Hu, J.21
Xiao, J.22
Yang, Z.23
Liu, Y.24
Xie, Q.25
Yu, H.26
Lian, J.27
Wen, P.28
Zhang, F.29
Li, H.30
Zeng, Y.31
Xiong, Z.32
Liu, S.33
Zhou, L.34
Huang, Z.35
An, N.36
Wang, J.37
Zheng, Q.38
Xiong, Y.39
Wang, G.40
Wang, B.41
Wang, J.42
Fan, Y.43
da Fonseca, R.R.44
Alfaro-Núñez, A.45
Schubert, M.46
Orlando, L.47
Mourier, T.48
Howard, J.T.49
Ganapathy, G.50
Pfenning, A.51
Whitney, O.52
Rivas, M.V.53
Hara, E.54
Smith, J.55
Farré, M.56
Narayan, J.57
Slavov, G.58
Romanov, M.N.59
Borges, R.60
Machado, J.P.61
Khan, I.62
Springer, M.S.63
Gatesy, J.64
Hoffmann, F.G.65
Opazo, J.C.66
Håstad, O.67
Sawyer, R.H.68
Kim, H.69
Kim, K.-W.70
Kim, H.J.71
Cho, S.72
Li, N.73
Huang, Y.74
Bruford, M.W.75
Zhan, X.76
Dixon, A.77
Bertelsen, M.F.78
Derryberry, E.79
Warren, W.80
Wilson, R.K.81
Li, S.82
Ray, D.A.83
Green, R.E.84
O'Brien, S.J.85
Griffin, D.86
Johnson, W.E.87
Haussler, D.88
Ryder, O.A.89
Willerslev, E.90
Graves, G.R.91
Alström, P.92
Fjeldså, J.93
Mindell, D.P.94
Edwards, S.V.95
Braun, E.L.96
Rahbek, C.97
Burt, D.W.98
Houde, P.99
Zhang, Y.100
Yang, H.101
Wang, J.102
Jarvis, E.D.103
Gilbert, M.T.P.104
Wang, J.105
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