-
1
-
-
0035252569
-
Parallel adaptive radiations in two major clades of placental mammals
-
Madsen O, et al. (2001) Parallel adaptive radiations in two major clades of placental mammals. Nature 409:610-614.
-
(2001)
Nature
, vol.409
, pp. 610-614
-
-
Madsen, O.1
-
2
-
-
0035252080
-
Molecular phylogenetics and the origins of placental mammals
-
Murphy WJ, et al. (2001) Molecular phylogenetics and the origins of placental mammals. Nature 409:614-618.
-
(2001)
Nature
, vol.409
, pp. 614-618
-
-
Murphy, W.J.1
-
3
-
-
0035861441
-
Resolution of the early placental mammal radiation using Bayesian phylogenetics
-
Murphy WJ, et al. (2001) Resolution of the early placental mammal radiation using Bayesian phylogenetics. Science 294:2348-2351.
-
(2001)
Science
, vol.294
, pp. 2348-2351
-
-
Murphy, W.J.1
-
5
-
-
33646255212
-
Retroposed elements as archives for the evolutionary history of placental mammals
-
Kriegs JO, et al. (2006) Retroposed elements as archives for the evolutionary history of placental mammals. PLoS Biol 4:e91.
-
(2006)
PLoS Biol
, vol.4
-
-
Kriegs, J.O.1
-
6
-
-
33745632616
-
Pegasoferae, an unexpected mammalian clade revealed by tracking ancient retroposon insertions
-
Nishihara H, Hasegawa M, Okada N (2006) Pegasoferae, an unexpected mammalian clade revealed by tracking ancient retroposon insertions. Proc Natl Acad Sci USA 103:9929-9934.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 9929-9934
-
-
Nishihara, H.1
Hasegawa, M.2
Okada, N.3
-
7
-
-
38449121762
-
Molecular and genomic data identify the closest living relative of primates
-
Janecka JE, et al. (2007) Molecular and genomic data identify the closest living relative of primates. Science 318:792-794.
-
(2007)
Science
, vol.318
, pp. 792-794
-
-
Janecka, J.E.1
-
9
-
-
0029669270
-
Continental breakup and the ordinal diversification of birds and mammals
-
Hedges SB, Parker PH, Sibley CG, Kumar S (1996) Continental breakup and the ordinal diversification of birds and mammals. Nature 381:226-229.
-
(1996)
Nature
, vol.381
, pp. 226-229
-
-
Hedges, S.B.1
Parker, P.H.2
Sibley, C.G.3
Kumar, S.4
-
10
-
-
0030837454
-
Endemic African mammals shake the phylogenetic tree
-
Springer MS, et al. (1997) Endemic African mammals shake the phylogenetic tree. Nature 388:61-64.
-
(1997)
Nature
, vol.388
, pp. 61-64
-
-
Springer, M.S.1
-
11
-
-
0035793073
-
Afrotheria: Plate tectonics meets genomics
-
Hedges SB (2001) Afrotheria: Plate tectonics meets genomics. Proc Natl Acad Sci USA 98:1-2.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 1-2
-
-
Hedges, S.B.1
-
12
-
-
0032544017
-
Molecular evidence for multiple origins of Insectivora and for a new order of endemic African insectivore mammals
-
Stanhope MJ, et al. (1998) Molecular evidence for multiple origins of Insectivora and for a new order of endemic African insectivore mammals. Proc Natl Acad Sci USA 95:9967-9972.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 9967-9972
-
-
Stanhope, M.J.1
-
14
-
-
23944505784
-
Aretroposon analysisofAfrotherian phylogeny
-
NishiharaH, etal. (2005) Aretroposon analysisofAfrotherian phylogeny. Mol Biol Evol 22:1823-1833.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 1823-1833
-
-
Nishihara, H.1
-
15
-
-
0034988036
-
-
EizirikE, Murphy WJ, O'BrienSJ(2001) Molecular dating and biogeographyofthe early placental mammal radiation. J Hered 92:212-219.
-
EizirikE, Murphy WJ, O'BrienSJ(2001) Molecular dating and biogeographyofthe early placental mammal radiation. J Hered 92:212-219.
-
-
-
-
16
-
-
35448956570
-
Genomics, biogeography, and the diversificationofplacental mammals
-
Wildman DE, etal. (2007) Genomics, biogeography, and the diversificationofplacental mammals. Proc Natl Acad Sci USA 104:14395-14400.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 14395-14400
-
-
Wildman, D.E.1
-
17
-
-
34147184456
-
Using genomic data to unravel the root of the placental mammal phylogeny
-
Murphy WJ, Pringle TH, Crider TA, Springer MS, Miller W (2007) Using genomic data to unravel the root of the placental mammal phylogeny. Genome Res 17:413-421.
-
(2007)
Genome Res
, vol.17
, pp. 413-421
-
-
Murphy, W.J.1
Pringle, T.H.2
Crider, T.A.3
Springer, M.S.4
Miller, W.5
-
20
-
-
0036792101
-
Molecular phylogeny of living xenarthrans and the impact of character and taxon sampling on the placental tree rooting
-
Delsuc F, et al. (2002) Molecular phylogeny of living xenarthrans and the impact of character and taxon sampling on the placental tree rooting. Mol Biol Evol 19:1656-1671.
-
(2002)
Mol Biol Evol
, vol.19
, pp. 1656-1671
-
-
Delsuc, F.1
-
21
-
-
0141609704
-
A new phylogenetic marker, apolipoprotein B, provides compelling evidence for eutherian relationships
-
Amrine-Madsen H, Koepfli KP, Wayne RK, Springer MS (2003) A new phylogenetic marker, apolipoprotein B, provides compelling evidence for eutherian relationships. Mol Phylogenet Evol 28:225-240.
-
(2003)
Mol Phylogenet Evol
, vol.28
, pp. 225-240
-
-
Amrine-Madsen, H.1
Koepfli, K.P.2
Wayne, R.K.3
Springer, M.S.4
-
22
-
-
0141609706
-
Evaluating placental interordinal phylogenies with novel sequences including RAG1, gamma-fibrinogen, ND6, and mt-tRNA, plus MCMC-driven nucleotide, amino acid, and codon models
-
Waddell PJ, Shelley S (2003) Evaluating placental interordinal phylogenies with novel sequences including RAG1, gamma-fibrinogen, ND6, and mt-tRNA, plus MCMC-driven nucleotide, amino acid, and codon models. Mol Phylogenet Evol 28:197-224.
-
(2003)
Mol Phylogenet Evol
, vol.28
, pp. 197-224
-
-
Waddell, P.J.1
Shelley, S.2
-
23
-
-
33846552919
-
Early history of mammals is elucidated with the ENCODE multiple species sequencing data
-
Nikolaev S, et al. (2007) Early history of mammals is elucidated with the ENCODE multiple species sequencing data. PLoS Genet 3:e2.
-
(2007)
PLoS Genet
, vol.3
-
-
Nikolaev, S.1
-
24
-
-
34548448442
-
Phylogenomic data analyses provide evidence that Xenarthra and Afrotheria are sister groups
-
Hallstrom BM, Kullberg M, Nilsson MA, Janke A (2007) Phylogenomic data analyses provide evidence that Xenarthra and Afrotheria are sister groups. Mol Biol Evol 24:2059-2068.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 2059-2068
-
-
Hallstrom, B.M.1
Kullberg, M.2
Nilsson, M.A.3
Janke, A.4
-
25
-
-
39749188544
-
Rooting the eutherian tree: The power and pitfalls of phylogenomics
-
Nishihara H, Okada N, Hasegawa M (2007) Rooting the eutherian tree: The power and pitfalls of phylogenomics. Genome Biol 8:R199.
-
(2007)
Genome Biol
, vol.8
-
-
Nishihara, H.1
Okada, N.2
Hasegawa, M.3
-
26
-
-
0033793019
-
Rare genomic changes as a tool for phylogenetics
-
Rokas A, Holland PW (2000) Rare genomic changes as a tool for phylogenetics. Trends Ecol Evol 15:454-459.
-
(2000)
Trends Ecol Evol
, vol.15
, pp. 454-459
-
-
Rokas, A.1
Holland, P.W.2
-
27
-
-
0033964296
-
SINE insertions: Powerful toolsfor molecular systematics
-
OkadaN
-
Shedlock AM, OkadaN(2000) SINE insertions: Powerful toolsfor molecular systematics. BioEssays 22:148-160.
-
(2000)
BioEssays
, vol.22
, pp. 148-160
-
-
Shedlock, A.M.1
-
28
-
-
0027205382
-
Determination of the phylogenetic relationships among Pacific salmonids by using short interspersed elements (SINEs) as temporal landmarks of evolution
-
Murata S, Takasaki N, Saitoh M, Okada N (1993) Determination of the phylogenetic relationships among Pacific salmonids by using short interspersed elements (SINEs) as temporal landmarks of evolution. Proc Natl Acad Sci USA 90:6995-6999.
-
(1993)
Proc Natl Acad Sci USA
, vol.90
, pp. 6995-6999
-
-
Murata, S.1
Takasaki, N.2
Saitoh, M.3
Okada, N.4
-
29
-
-
0030794201
-
Molecular evidence from retroposons that whales form a clade within even-toed ungulates
-
Shimamura M, et al. (1997) Molecular evidence from retroposons that whales form a clade within even-toed ungulates. Nature 388:666-670.
-
(1997)
Nature
, vol.388
, pp. 666-670
-
-
Shimamura, M.1
-
30
-
-
0033621101
-
Phylogenetic relationships among cetartiodactyls based on insertions of short and long interspersed elements: Hippopotamuses are the closest extant relatives of whales
-
Nikaido M, Rooney AP, Okada N (1999) Phylogenetic relationships among cetartiodactyls based on insertions of short and long interspersed elements: Hippopotamuses are the closest extant relatives of whales. Proc Natl Acad Sci USA 96:10261-10266.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 10261-10266
-
-
Nikaido, M.1
Rooney, A.P.2
Okada, N.3
-
31
-
-
0035108258
-
SINE insertions in cladistic analyses and the phylogenetic affiliations of Tarsius bancanus to other primates
-
Schmitz J, Ohme M, Zischler H (2001) SINE insertions in cladistic analyses and the phylogenetic affiliations of Tarsius bancanus to other primates. Genetics 157:777-784.
-
(2001)
Genetics
, vol.157
, pp. 777-784
-
-
Schmitz, J.1
Ohme, M.2
Zischler, H.3
-
32
-
-
0035912816
-
Retroposon analysis of major cetacean lineages: The monophyly of toothed whales and the paraphyly of river dolphins
-
Nikaido M, et al. (2001) Retroposon analysis of major cetacean lineages: The monophyly of toothed whales and the paraphyly of river dolphins. Proc Natl Acad Sci USA 98:7384-7389.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 7384-7389
-
-
Nikaido, M.1
-
33
-
-
0242331639
-
Alu elements and hominid phylogenetics
-
Salem AH, et al. (2003) Alu elements and hominid phylogenetics. Proc Natl Acad Sci USA 100:12787-12791.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 12787-12791
-
-
Salem, A.H.1
-
34
-
-
3242656981
-
Primate jumping genes elucidate strepsirrhine phylogeny
-
Roos C, Schmitz J, Zischler H (2004) Primate jumping genes elucidate strepsirrhine phylogeny. Proc Natl Acad Sci USA 101:10650-10654.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 10650-10654
-
-
Roos, C.1
Schmitz, J.2
Zischler, H.3
-
35
-
-
33947649553
-
Evolutionary history of 7SL RNA-derived SINEs in Supraprimates
-
Kriegs JO, Churakov G, Jurka J, Brosius J, Schmitz J (2007) Evolutionary history of 7SL RNA-derived SINEs in Supraprimates. Trends Genet 23:158-161.
-
(2007)
Trends Genet
, vol.23
, pp. 158-161
-
-
Kriegs, J.O.1
Churakov, G.2
Jurka, J.3
Brosius, J.4
Schmitz, J.5
-
36
-
-
1542513556
-
Mobile elements: Drivers of genome evolution
-
Kazazian HH, Jr (2004) Mobile elements: Drivers of genome evolution. Science 303:1626-1632.
-
(2004)
Science
, vol.303
, pp. 1626-1632
-
-
Kazazian Jr, H.H.1
-
37
-
-
0034750288
-
Phylogenetic relationships and ancient incomplete lineage sorting among cichlid fishes in Lake Tanganyika as revealed by analysis of the insertion of retroposons
-
TakahashiK, TeraiY, NishidaM, OkadaN(2001) Phylogenetic relationships and ancient incomplete lineage sorting among cichlid fishes in Lake Tanganyika as revealed by analysis of the insertion of retroposons. Mol Biol Evol 18:2057-2066.
-
(2001)
Mol Biol Evol
, vol.18
, pp. 2057-2066
-
-
Takahashi, K.1
Terai, Y.2
Nishida, M.3
Okada, N.4
-
38
-
-
4544222472
-
SINEs of speciation: Tracking lineages with retroposons
-
Shedlock AM, Takahashi K, Okada N (2004) SINEs of speciation: Tracking lineages with retroposons. Trends Ecol Evol 19:545-553.
-
(2004)
Trends Ecol Evol
, vol.19
, pp. 545-553
-
-
Shedlock, A.M.1
Takahashi, K.2
Okada, N.3
-
39
-
-
33646592221
-
Baleen whale phylogeny and a past extensive radiation event revealed by SINE insertion analysis
-
Nikaido M, et al. (2006) Baleen whale phylogeny and a past extensive radiation event revealed by SINE insertion analysis. Mol Biol Evol 23:866-873.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 866-873
-
-
Nikaido, M.1
-
40
-
-
0031719198
-
Detection of the ongoing sorting of ancestrally polymorphic SINEs toward fixation or loss in populations of two species of charr during speciation
-
Hamada M, et al. (1998) Detection of the ongoing sorting of ancestrally polymorphic SINEs toward fixation or loss in populations of two species of charr during speciation. Genetics 150:301-311.
-
(1998)
Genetics
, vol.150
, pp. 301-311
-
-
Hamada, M.1
-
41
-
-
0037910330
-
Using SINEs to probe ancient explosive speciation: "Hidden" radiationof African cichlids?
-
Terai Y, Takahashi K, Nishida M, Sato T, Okada N (2003) Using SINEs to probe ancient explosive speciation: "Hidden" radiationof African cichlids? Mol Biol Evol 20:924-930.
-
(2003)
Mol Biol Evol
, vol.20
, pp. 924-930
-
-
Terai, Y.1
Takahashi, K.2
Nishida, M.3
Sato, T.4
Okada, N.5
-
42
-
-
0141721393
-
Timing and biogeography of the eutherian radiation: Fossils and molecules compared
-
Archibald JD (2003) Timing and biogeography of the eutherian radiation: Fossils and molecules compared. Mol Phylogenet Evol 28:350-359.
-
(2003)
Mol Phylogenet Evol
, vol.28
, pp. 350-359
-
-
Archibald, J.D.1
-
43
-
-
0027036996
-
Early Cretaceous rifts of Western and Central Africa: An overview
-
Guiraud R, Maurin JC (1992) Early Cretaceous rifts of Western and Central Africa: An overview. Tectonophysics 213:153-168.
-
(1992)
Tectonophysics
, vol.213
, pp. 153-168
-
-
Guiraud, R.1
Maurin, J.C.2
-
44
-
-
29844433933
-
Phanerozoic geological evolution of northern and central Africa: An overview
-
Guiraud R, Bosworth W, Thierry J, Delplanque A (2005) Phanerozoic geological evolution of northern and central Africa: An overview. J Afr Earth Sci 43:83-143.
-
(2005)
J Afr Earth Sci
, vol.43
, pp. 83-143
-
-
Guiraud, R.1
Bosworth, W.2
Thierry, J.3
Delplanque, A.4
-
45
-
-
65249160855
-
-
Milani EJ, Thomaz Filho A (2000) in Tectonic Evolution of South America, eds Cordani UG, Milani EJ, Thomaz Filho A, Campos DA (International Geological Congress, Rio de Janiero), pp 389-449.
-
Milani EJ, Thomaz Filho A (2000) in Tectonic Evolution of South America, eds Cordani UG, Milani EJ, Thomaz Filho A, Campos DA (International Geological Congress, Rio de Janiero), pp 389-449.
-
-
-
-
46
-
-
0141792735
-
Madagascar: Heads it's acontinent, tails it's an island
-
deWitMJ(2003) Madagascar: Heads it's acontinent, tails it's an island. Annu Rev Earth Planet Sci 31:213-248.
-
(2003)
Annu Rev Earth Planet Sci
, vol.31
, pp. 213-248
-
-
deWitMJ1
-
47
-
-
65249140814
-
-
Atlas of Earth History 2001: 90-0497 Department of Geology, University of Texas, Arlington
-
Scotese CR (2001) Atlas of Earth History 2001: Paleomap Progress Report 90-0497 (Department of Geology, University of Texas, Arlington).
-
(2001)
Paleomap Progress Report
-
-
Scotese, C.R.1
-
48
-
-
0037428056
-
Slab pull, mantle convection, and Pangaean assembly and dispersal
-
Collins WJ (2003) Slab pull, mantle convection, and Pangaean assembly and dispersal. Earth Planet Sci Lett 205:225-237.
-
(2003)
Earth Planet Sci Lett
, vol.205
, pp. 225-237
-
-
Collins, W.J.1
-
49
-
-
65249161398
-
Cretaceous paleogeography, paleoclimatology, and amniote biogeography of the low and mid-latitude South Atlantic ocean
-
in press
-
Jacobs LL, et al. (2009) Cretaceous paleogeography, paleoclimatology, and amniote biogeography of the low and mid-latitude South Atlantic ocean. Bull Geol Soc France, in press.
-
(2009)
Bull Geol Soc France
-
-
Jacobs, L.L.1
-
50
-
-
0018695417
-
Tectonic progradation and plate tectonic evolution of the Alps
-
Frisch W (1979) Tectonic progradation and plate tectonic evolution of the Alps. Tectonophysics 60:121-139.
-
(1979)
Tectonophysics
, vol.60
, pp. 121-139
-
-
Frisch, W.1
-
51
-
-
0028920059
-
Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences
-
Smit AF, Toth G, Riggs AD, Jurka J (1995) Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences. J Mol Biol 246:401-417.
-
(1995)
J Mol Biol
, vol.246
, pp. 401-417
-
-
Smit, A.F.1
Toth, G.2
Riggs, A.D.3
Jurka, J.4
-
53
-
-
0142121837
-
Time scale of eutherian evolution estimated without assuming a constant rate of molecular evolution
-
Hasegawa M, Thorne JL, Kishino H (2003) Time scale of eutherian evolution estimated without assuming a constant rate of molecular evolution. Genes Genet Syst 78:267-283.
-
(2003)
Genes Genet Syst
, vol.78
, pp. 267-283
-
-
Hasegawa, M.1
Thorne, J.L.2
Kishino, H.3
-
54
-
-
0001689156
-
-
ed Walliser OH Springer, Berlin, pp
-
Morrow JR, Schindler E, Walliser OH (1995) in Global Events and Event Stratigraphy in the Phanerozoic, ed Walliser OH (Springer, Berlin), pp 53-61.
-
(1995)
Global Events and Event Stratigraphy in the Phanerozoic
, pp. 53-61
-
-
Morrow, J.R.1
Schindler, E.2
Walliser, O.H.3
-
56
-
-
0035986875
-
Rodent phylogeny and a time scale for the evolution of Glires: Evidence from an extensive taxon sampling using three nuclear genes
-
Huchon D, et al. (2002) Rodent phylogeny and a time scale for the evolution of Glires: Evidence from an extensive taxon sampling using three nuclear genes. Mol Biol Evol 19:1053-1065.
-
(2002)
Mol Biol Evol
, vol.19
, pp. 1053-1065
-
-
Huchon, D.1
-
57
-
-
49749129961
-
Confirming the phylogeny ofmammalsbyuse of large comparative sequence data sets
-
GreenED
-
Prasad AB, Allard MW, GreenED (2008) Confirming the phylogeny ofmammalsbyuse of large comparative sequence data sets. Mol Biol Evol 25:1795-1808.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 1795-1808
-
-
Prasad, A.B.1
Allard, M.W.2
|