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Volumn 106, Issue 13, 2009, Pages 5235-5240

Retroposon analysis and recent geological data suggest near-simultaneous divergence of the three superorders of mammals

Author keywords

Continental divisions; Incomplete lineage sorting; Long interspersed element 1; Mammalian phylogeny; Paleobiogeography

Indexed keywords

AFRICA; ARTICLE; CONTROLLED STUDY; EDENTATA; GENE LOCUS; GENETIC VARIABILITY; HUMAN; MAMMALIAN GENETICS; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; RETROPOSON; SOUTH AMERICA;

EID: 65249116423     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0809297106     Document Type: Article
Times cited : (136)

References (57)
  • 1
    • 0035252569 scopus 로고    scopus 로고
    • Parallel adaptive radiations in two major clades of placental mammals
    • Madsen O, et al. (2001) Parallel adaptive radiations in two major clades of placental mammals. Nature 409:610-614.
    • (2001) Nature , vol.409 , pp. 610-614
    • Madsen, O.1
  • 2
    • 0035252080 scopus 로고    scopus 로고
    • Molecular phylogenetics and the origins of placental mammals
    • Murphy WJ, et al. (2001) Molecular phylogenetics and the origins of placental mammals. Nature 409:614-618.
    • (2001) Nature , vol.409 , pp. 614-618
    • Murphy, W.J.1
  • 3
    • 0035861441 scopus 로고    scopus 로고
    • Resolution of the early placental mammal radiation using Bayesian phylogenetics
    • Murphy WJ, et al. (2001) Resolution of the early placental mammal radiation using Bayesian phylogenetics. Science 294:2348-2351.
    • (2001) Science , vol.294 , pp. 2348-2351
    • Murphy, W.J.1
  • 5
    • 33646255212 scopus 로고    scopus 로고
    • Retroposed elements as archives for the evolutionary history of placental mammals
    • Kriegs JO, et al. (2006) Retroposed elements as archives for the evolutionary history of placental mammals. PLoS Biol 4:e91.
    • (2006) PLoS Biol , vol.4
    • Kriegs, J.O.1
  • 6
    • 33745632616 scopus 로고    scopus 로고
    • Pegasoferae, an unexpected mammalian clade revealed by tracking ancient retroposon insertions
    • Nishihara H, Hasegawa M, Okada N (2006) Pegasoferae, an unexpected mammalian clade revealed by tracking ancient retroposon insertions. Proc Natl Acad Sci USA 103:9929-9934.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 9929-9934
    • Nishihara, H.1    Hasegawa, M.2    Okada, N.3
  • 7
    • 38449121762 scopus 로고    scopus 로고
    • Molecular and genomic data identify the closest living relative of primates
    • Janecka JE, et al. (2007) Molecular and genomic data identify the closest living relative of primates. Science 318:792-794.
    • (2007) Science , vol.318 , pp. 792-794
    • Janecka, J.E.1
  • 9
    • 0029669270 scopus 로고    scopus 로고
    • Continental breakup and the ordinal diversification of birds and mammals
    • Hedges SB, Parker PH, Sibley CG, Kumar S (1996) Continental breakup and the ordinal diversification of birds and mammals. Nature 381:226-229.
    • (1996) Nature , vol.381 , pp. 226-229
    • Hedges, S.B.1    Parker, P.H.2    Sibley, C.G.3    Kumar, S.4
  • 10
    • 0030837454 scopus 로고    scopus 로고
    • Endemic African mammals shake the phylogenetic tree
    • Springer MS, et al. (1997) Endemic African mammals shake the phylogenetic tree. Nature 388:61-64.
    • (1997) Nature , vol.388 , pp. 61-64
    • Springer, M.S.1
  • 11
    • 0035793073 scopus 로고    scopus 로고
    • Afrotheria: Plate tectonics meets genomics
    • Hedges SB (2001) Afrotheria: Plate tectonics meets genomics. Proc Natl Acad Sci USA 98:1-2.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 1-2
    • Hedges, S.B.1
  • 12
    • 0032544017 scopus 로고    scopus 로고
    • Molecular evidence for multiple origins of Insectivora and for a new order of endemic African insectivore mammals
    • Stanhope MJ, et al. (1998) Molecular evidence for multiple origins of Insectivora and for a new order of endemic African insectivore mammals. Proc Natl Acad Sci USA 95:9967-9972.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 9967-9972
    • Stanhope, M.J.1
  • 14
    • 23944505784 scopus 로고    scopus 로고
    • Aretroposon analysisofAfrotherian phylogeny
    • NishiharaH, etal. (2005) Aretroposon analysisofAfrotherian phylogeny. Mol Biol Evol 22:1823-1833.
    • (2005) Mol Biol Evol , vol.22 , pp. 1823-1833
    • Nishihara, H.1
  • 15
    • 0034988036 scopus 로고    scopus 로고
    • EizirikE, Murphy WJ, O'BrienSJ(2001) Molecular dating and biogeographyofthe early placental mammal radiation. J Hered 92:212-219.
    • EizirikE, Murphy WJ, O'BrienSJ(2001) Molecular dating and biogeographyofthe early placental mammal radiation. J Hered 92:212-219.
  • 16
    • 35448956570 scopus 로고    scopus 로고
    • Genomics, biogeography, and the diversificationofplacental mammals
    • Wildman DE, etal. (2007) Genomics, biogeography, and the diversificationofplacental mammals. Proc Natl Acad Sci USA 104:14395-14400.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 14395-14400
    • Wildman, D.E.1
  • 20
    • 0036792101 scopus 로고    scopus 로고
    • Molecular phylogeny of living xenarthrans and the impact of character and taxon sampling on the placental tree rooting
    • Delsuc F, et al. (2002) Molecular phylogeny of living xenarthrans and the impact of character and taxon sampling on the placental tree rooting. Mol Biol Evol 19:1656-1671.
    • (2002) Mol Biol Evol , vol.19 , pp. 1656-1671
    • Delsuc, F.1
  • 21
    • 0141609704 scopus 로고    scopus 로고
    • A new phylogenetic marker, apolipoprotein B, provides compelling evidence for eutherian relationships
    • Amrine-Madsen H, Koepfli KP, Wayne RK, Springer MS (2003) A new phylogenetic marker, apolipoprotein B, provides compelling evidence for eutherian relationships. Mol Phylogenet Evol 28:225-240.
    • (2003) Mol Phylogenet Evol , vol.28 , pp. 225-240
    • Amrine-Madsen, H.1    Koepfli, K.P.2    Wayne, R.K.3    Springer, M.S.4
  • 22
    • 0141609706 scopus 로고    scopus 로고
    • Evaluating placental interordinal phylogenies with novel sequences including RAG1, gamma-fibrinogen, ND6, and mt-tRNA, plus MCMC-driven nucleotide, amino acid, and codon models
    • Waddell PJ, Shelley S (2003) Evaluating placental interordinal phylogenies with novel sequences including RAG1, gamma-fibrinogen, ND6, and mt-tRNA, plus MCMC-driven nucleotide, amino acid, and codon models. Mol Phylogenet Evol 28:197-224.
    • (2003) Mol Phylogenet Evol , vol.28 , pp. 197-224
    • Waddell, P.J.1    Shelley, S.2
  • 23
    • 33846552919 scopus 로고    scopus 로고
    • Early history of mammals is elucidated with the ENCODE multiple species sequencing data
    • Nikolaev S, et al. (2007) Early history of mammals is elucidated with the ENCODE multiple species sequencing data. PLoS Genet 3:e2.
    • (2007) PLoS Genet , vol.3
    • Nikolaev, S.1
  • 24
    • 34548448442 scopus 로고    scopus 로고
    • Phylogenomic data analyses provide evidence that Xenarthra and Afrotheria are sister groups
    • Hallstrom BM, Kullberg M, Nilsson MA, Janke A (2007) Phylogenomic data analyses provide evidence that Xenarthra and Afrotheria are sister groups. Mol Biol Evol 24:2059-2068.
    • (2007) Mol Biol Evol , vol.24 , pp. 2059-2068
    • Hallstrom, B.M.1    Kullberg, M.2    Nilsson, M.A.3    Janke, A.4
  • 25
    • 39749188544 scopus 로고    scopus 로고
    • Rooting the eutherian tree: The power and pitfalls of phylogenomics
    • Nishihara H, Okada N, Hasegawa M (2007) Rooting the eutherian tree: The power and pitfalls of phylogenomics. Genome Biol 8:R199.
    • (2007) Genome Biol , vol.8
    • Nishihara, H.1    Okada, N.2    Hasegawa, M.3
  • 26
    • 0033793019 scopus 로고    scopus 로고
    • Rare genomic changes as a tool for phylogenetics
    • Rokas A, Holland PW (2000) Rare genomic changes as a tool for phylogenetics. Trends Ecol Evol 15:454-459.
    • (2000) Trends Ecol Evol , vol.15 , pp. 454-459
    • Rokas, A.1    Holland, P.W.2
  • 27
    • 0033964296 scopus 로고    scopus 로고
    • SINE insertions: Powerful toolsfor molecular systematics
    • OkadaN
    • Shedlock AM, OkadaN(2000) SINE insertions: Powerful toolsfor molecular systematics. BioEssays 22:148-160.
    • (2000) BioEssays , vol.22 , pp. 148-160
    • Shedlock, A.M.1
  • 28
    • 0027205382 scopus 로고
    • Determination of the phylogenetic relationships among Pacific salmonids by using short interspersed elements (SINEs) as temporal landmarks of evolution
    • Murata S, Takasaki N, Saitoh M, Okada N (1993) Determination of the phylogenetic relationships among Pacific salmonids by using short interspersed elements (SINEs) as temporal landmarks of evolution. Proc Natl Acad Sci USA 90:6995-6999.
    • (1993) Proc Natl Acad Sci USA , vol.90 , pp. 6995-6999
    • Murata, S.1    Takasaki, N.2    Saitoh, M.3    Okada, N.4
  • 29
    • 0030794201 scopus 로고    scopus 로고
    • Molecular evidence from retroposons that whales form a clade within even-toed ungulates
    • Shimamura M, et al. (1997) Molecular evidence from retroposons that whales form a clade within even-toed ungulates. Nature 388:666-670.
    • (1997) Nature , vol.388 , pp. 666-670
    • Shimamura, M.1
  • 30
    • 0033621101 scopus 로고    scopus 로고
    • Phylogenetic relationships among cetartiodactyls based on insertions of short and long interspersed elements: Hippopotamuses are the closest extant relatives of whales
    • Nikaido M, Rooney AP, Okada N (1999) Phylogenetic relationships among cetartiodactyls based on insertions of short and long interspersed elements: Hippopotamuses are the closest extant relatives of whales. Proc Natl Acad Sci USA 96:10261-10266.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 10261-10266
    • Nikaido, M.1    Rooney, A.P.2    Okada, N.3
  • 31
    • 0035108258 scopus 로고    scopus 로고
    • SINE insertions in cladistic analyses and the phylogenetic affiliations of Tarsius bancanus to other primates
    • Schmitz J, Ohme M, Zischler H (2001) SINE insertions in cladistic analyses and the phylogenetic affiliations of Tarsius bancanus to other primates. Genetics 157:777-784.
    • (2001) Genetics , vol.157 , pp. 777-784
    • Schmitz, J.1    Ohme, M.2    Zischler, H.3
  • 32
    • 0035912816 scopus 로고    scopus 로고
    • Retroposon analysis of major cetacean lineages: The monophyly of toothed whales and the paraphyly of river dolphins
    • Nikaido M, et al. (2001) Retroposon analysis of major cetacean lineages: The monophyly of toothed whales and the paraphyly of river dolphins. Proc Natl Acad Sci USA 98:7384-7389.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 7384-7389
    • Nikaido, M.1
  • 33
    • 0242331639 scopus 로고    scopus 로고
    • Alu elements and hominid phylogenetics
    • Salem AH, et al. (2003) Alu elements and hominid phylogenetics. Proc Natl Acad Sci USA 100:12787-12791.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 12787-12791
    • Salem, A.H.1
  • 34
    • 3242656981 scopus 로고    scopus 로고
    • Primate jumping genes elucidate strepsirrhine phylogeny
    • Roos C, Schmitz J, Zischler H (2004) Primate jumping genes elucidate strepsirrhine phylogeny. Proc Natl Acad Sci USA 101:10650-10654.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 10650-10654
    • Roos, C.1    Schmitz, J.2    Zischler, H.3
  • 36
    • 1542513556 scopus 로고    scopus 로고
    • Mobile elements: Drivers of genome evolution
    • Kazazian HH, Jr (2004) Mobile elements: Drivers of genome evolution. Science 303:1626-1632.
    • (2004) Science , vol.303 , pp. 1626-1632
    • Kazazian Jr, H.H.1
  • 37
    • 0034750288 scopus 로고    scopus 로고
    • Phylogenetic relationships and ancient incomplete lineage sorting among cichlid fishes in Lake Tanganyika as revealed by analysis of the insertion of retroposons
    • TakahashiK, TeraiY, NishidaM, OkadaN(2001) Phylogenetic relationships and ancient incomplete lineage sorting among cichlid fishes in Lake Tanganyika as revealed by analysis of the insertion of retroposons. Mol Biol Evol 18:2057-2066.
    • (2001) Mol Biol Evol , vol.18 , pp. 2057-2066
    • Takahashi, K.1    Terai, Y.2    Nishida, M.3    Okada, N.4
  • 38
    • 4544222472 scopus 로고    scopus 로고
    • SINEs of speciation: Tracking lineages with retroposons
    • Shedlock AM, Takahashi K, Okada N (2004) SINEs of speciation: Tracking lineages with retroposons. Trends Ecol Evol 19:545-553.
    • (2004) Trends Ecol Evol , vol.19 , pp. 545-553
    • Shedlock, A.M.1    Takahashi, K.2    Okada, N.3
  • 39
    • 33646592221 scopus 로고    scopus 로고
    • Baleen whale phylogeny and a past extensive radiation event revealed by SINE insertion analysis
    • Nikaido M, et al. (2006) Baleen whale phylogeny and a past extensive radiation event revealed by SINE insertion analysis. Mol Biol Evol 23:866-873.
    • (2006) Mol Biol Evol , vol.23 , pp. 866-873
    • Nikaido, M.1
  • 40
    • 0031719198 scopus 로고    scopus 로고
    • Detection of the ongoing sorting of ancestrally polymorphic SINEs toward fixation or loss in populations of two species of charr during speciation
    • Hamada M, et al. (1998) Detection of the ongoing sorting of ancestrally polymorphic SINEs toward fixation or loss in populations of two species of charr during speciation. Genetics 150:301-311.
    • (1998) Genetics , vol.150 , pp. 301-311
    • Hamada, M.1
  • 41
    • 0037910330 scopus 로고    scopus 로고
    • Using SINEs to probe ancient explosive speciation: "Hidden" radiationof African cichlids?
    • Terai Y, Takahashi K, Nishida M, Sato T, Okada N (2003) Using SINEs to probe ancient explosive speciation: "Hidden" radiationof African cichlids? Mol Biol Evol 20:924-930.
    • (2003) Mol Biol Evol , vol.20 , pp. 924-930
    • Terai, Y.1    Takahashi, K.2    Nishida, M.3    Sato, T.4    Okada, N.5
  • 42
    • 0141721393 scopus 로고    scopus 로고
    • Timing and biogeography of the eutherian radiation: Fossils and molecules compared
    • Archibald JD (2003) Timing and biogeography of the eutherian radiation: Fossils and molecules compared. Mol Phylogenet Evol 28:350-359.
    • (2003) Mol Phylogenet Evol , vol.28 , pp. 350-359
    • Archibald, J.D.1
  • 43
    • 0027036996 scopus 로고
    • Early Cretaceous rifts of Western and Central Africa: An overview
    • Guiraud R, Maurin JC (1992) Early Cretaceous rifts of Western and Central Africa: An overview. Tectonophysics 213:153-168.
    • (1992) Tectonophysics , vol.213 , pp. 153-168
    • Guiraud, R.1    Maurin, J.C.2
  • 44
    • 29844433933 scopus 로고    scopus 로고
    • Phanerozoic geological evolution of northern and central Africa: An overview
    • Guiraud R, Bosworth W, Thierry J, Delplanque A (2005) Phanerozoic geological evolution of northern and central Africa: An overview. J Afr Earth Sci 43:83-143.
    • (2005) J Afr Earth Sci , vol.43 , pp. 83-143
    • Guiraud, R.1    Bosworth, W.2    Thierry, J.3    Delplanque, A.4
  • 45
    • 65249160855 scopus 로고    scopus 로고
    • Milani EJ, Thomaz Filho A (2000) in Tectonic Evolution of South America, eds Cordani UG, Milani EJ, Thomaz Filho A, Campos DA (International Geological Congress, Rio de Janiero), pp 389-449.
    • Milani EJ, Thomaz Filho A (2000) in Tectonic Evolution of South America, eds Cordani UG, Milani EJ, Thomaz Filho A, Campos DA (International Geological Congress, Rio de Janiero), pp 389-449.
  • 46
    • 0141792735 scopus 로고    scopus 로고
    • Madagascar: Heads it's acontinent, tails it's an island
    • deWitMJ(2003) Madagascar: Heads it's acontinent, tails it's an island. Annu Rev Earth Planet Sci 31:213-248.
    • (2003) Annu Rev Earth Planet Sci , vol.31 , pp. 213-248
    • deWitMJ1
  • 47
    • 65249140814 scopus 로고    scopus 로고
    • Atlas of Earth History 2001: 90-0497 Department of Geology, University of Texas, Arlington
    • Scotese CR (2001) Atlas of Earth History 2001: Paleomap Progress Report 90-0497 (Department of Geology, University of Texas, Arlington).
    • (2001) Paleomap Progress Report
    • Scotese, C.R.1
  • 48
    • 0037428056 scopus 로고    scopus 로고
    • Slab pull, mantle convection, and Pangaean assembly and dispersal
    • Collins WJ (2003) Slab pull, mantle convection, and Pangaean assembly and dispersal. Earth Planet Sci Lett 205:225-237.
    • (2003) Earth Planet Sci Lett , vol.205 , pp. 225-237
    • Collins, W.J.1
  • 49
    • 65249161398 scopus 로고    scopus 로고
    • Cretaceous paleogeography, paleoclimatology, and amniote biogeography of the low and mid-latitude South Atlantic ocean
    • in press
    • Jacobs LL, et al. (2009) Cretaceous paleogeography, paleoclimatology, and amniote biogeography of the low and mid-latitude South Atlantic ocean. Bull Geol Soc France, in press.
    • (2009) Bull Geol Soc France
    • Jacobs, L.L.1
  • 50
    • 0018695417 scopus 로고
    • Tectonic progradation and plate tectonic evolution of the Alps
    • Frisch W (1979) Tectonic progradation and plate tectonic evolution of the Alps. Tectonophysics 60:121-139.
    • (1979) Tectonophysics , vol.60 , pp. 121-139
    • Frisch, W.1
  • 51
    • 0028920059 scopus 로고
    • Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences
    • Smit AF, Toth G, Riggs AD, Jurka J (1995) Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences. J Mol Biol 246:401-417.
    • (1995) J Mol Biol , vol.246 , pp. 401-417
    • Smit, A.F.1    Toth, G.2    Riggs, A.D.3    Jurka, J.4
  • 53
    • 0142121837 scopus 로고    scopus 로고
    • Time scale of eutherian evolution estimated without assuming a constant rate of molecular evolution
    • Hasegawa M, Thorne JL, Kishino H (2003) Time scale of eutherian evolution estimated without assuming a constant rate of molecular evolution. Genes Genet Syst 78:267-283.
    • (2003) Genes Genet Syst , vol.78 , pp. 267-283
    • Hasegawa, M.1    Thorne, J.L.2    Kishino, H.3
  • 56
    • 0035986875 scopus 로고    scopus 로고
    • Rodent phylogeny and a time scale for the evolution of Glires: Evidence from an extensive taxon sampling using three nuclear genes
    • Huchon D, et al. (2002) Rodent phylogeny and a time scale for the evolution of Glires: Evidence from an extensive taxon sampling using three nuclear genes. Mol Biol Evol 19:1053-1065.
    • (2002) Mol Biol Evol , vol.19 , pp. 1053-1065
    • Huchon, D.1
  • 57
    • 49749129961 scopus 로고    scopus 로고
    • Confirming the phylogeny ofmammalsbyuse of large comparative sequence data sets
    • GreenED
    • Prasad AB, Allard MW, GreenED (2008) Confirming the phylogeny ofmammalsbyuse of large comparative sequence data sets. Mol Biol Evol 25:1795-1808.
    • (2008) Mol Biol Evol , vol.25 , pp. 1795-1808
    • Prasad, A.B.1    Allard, M.W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.