메뉴 건너뛰기




Volumn 49, Issue 9, 2016, Pages 1903-1910

Advancements in Aptamer Discovery Technologies

Author keywords

[No Author keywords available]

Indexed keywords

APTAMER;

EID: 84988647877     PISSN: 00014842     EISSN: 15204898     Source Type: Journal    
DOI: 10.1021/acs.accounts.6b00283     Document Type: Article
Times cited : (136)

References (41)
  • 1
    • 84930207118 scopus 로고    scopus 로고
    • Blame It on the Antibodies
    • Baker, M. Blame It on the Antibodies Nature 2015, 521, 274-276 10.1038/521274a
    • (2015) Nature , vol.521 , pp. 274-276
    • Baker, M.1
  • 2
    • 84923206397 scopus 로고    scopus 로고
    • Standarize Antibodies Used in Research
    • Bradbury, A.; Plückthun, A. Standarize Antibodies Used in Research Nature 2015, 518, 27-29 10.1038/518027a
    • (2015) Nature , vol.518 , pp. 27-29
    • Bradbury, A.1    Plückthun, A.2
  • 3
    • 0025074907 scopus 로고
    • In Vitro Selection of RNA Molecules That Bind Specific Ligands
    • Ellington, a D.; Szostak, J. W. In Vitro Selection of RNA Molecules That Bind Specific Ligands Nature 1990, 346, 818-822 10.1038/346818a0
    • (1990) Nature , vol.346 , pp. 818-822
    • Ellington, A.D.1    Szostak, J.W.2
  • 4
    • 0025194307 scopus 로고
    • Systematic Evolution of Ligands by Exponential Enrichment: RNA Ligands to Bacteriophage T4 DNA Polymerase
    • Tuerk, C.; Gold, L. Systematic Evolution of Ligands by Exponential Enrichment: RNA Ligands to Bacteriophage T4 DNA Polymerase Science 1990, 249, 505-510 10.1126/science.2200121
    • (1990) Science , vol.249 , pp. 505-510
    • Tuerk, C.1    Gold, L.2
  • 5
    • 0026325728 scopus 로고
    • SELEXION. Systematic Evolution of Ligands by Exponential Enrichment with Integrated Optimization by Non-Linear Analysis
    • Irvine, D.; Tuerk, C.; Gold, L. SELEXION. Systematic Evolution of Ligands by Exponential Enrichment with Integrated Optimization by Non-Linear Analysis J. Mol. Biol. 1991, 222, 739-761 10.1016/0022-2836(91)90509-5
    • (1991) J. Mol. Biol. , vol.222 , pp. 739-761
    • Irvine, D.1    Tuerk, C.2    Gold, L.3
  • 6
    • 84865518169 scopus 로고    scopus 로고
    • Influence of Target Concentration and Background Binding on in Vitro Selection of Affinity Reagents
    • Wang, J.; Rudzinski, J. F.; Gong, Q.; Soh, H. T.; Atzberger, P. J. Influence of Target Concentration and Background Binding on In Vitro Selection of Affinity Reagents PLoS One 2012, 7, e43940 10.1371/journal.pone.0043940
    • (2012) PLoS One , vol.7 , pp. e43940
    • Wang, J.1    Rudzinski, J.F.2    Gong, Q.3    Soh, H.T.4    Atzberger, P.J.5
  • 7
    • 17444440621 scopus 로고    scopus 로고
    • The Mathematics of SELEX against Complex Targets
    • Vant-Hull, B.; Payano-Baez, A.; Davis, R. H.; Gold, L. The Mathematics of SELEX against Complex Targets J. Mol. Biol. 1998, 278, 579-597 10.1006/jmbi.1998.1727
    • (1998) J. Mol. Biol. , vol.278 , pp. 579-597
    • Vant-Hull, B.1    Payano-Baez, A.2    Davis, R.H.3    Gold, L.4
  • 8
    • 34248515435 scopus 로고    scopus 로고
    • SELEX Experiments: New Prospects, Applications and Data Analysis in Inferring Regulatory Pathways
    • Djordjevic, M. SELEX Experiments: New Prospects, Applications and Data Analysis in Inferring Regulatory Pathways Biomol. Eng. 2007, 24, 179-189 10.1016/j.bioeng.2007.03.001
    • (2007) Biomol. Eng. , vol.24 , pp. 179-189
    • Djordjevic, M.1
  • 9
    • 23844441591 scopus 로고    scopus 로고
    • The Enhancement of PCR Amplification of a Random Sequence DNA Library by DMSO and Betaine: Application to in Vitro Combinatorial Selection of Aptamers
    • Kang, J.; Myung, S. L.; Gorenstein, D. G. The Enhancement of PCR Amplification of a Random Sequence DNA Library by DMSO and Betaine: Application to in Vitro Combinatorial Selection of Aptamers J. Biochem. Biophys. Methods 2005, 64, 147-151 10.1016/j.jbbm.2005.06.003
    • (2005) J. Biochem. Biophys. Methods , vol.64 , pp. 147-151
    • Kang, J.1    Myung, S.L.2    Gorenstein, D.G.3
  • 11
    • 41849089323 scopus 로고    scopus 로고
    • Single Microbead SELEX for Efficient ssDNA Aptamer Generation against Botulinum Neurotoxin
    • Tok, J. B.; Fischer, N. O. Single Microbead SELEX for Efficient ssDNA Aptamer Generation against Botulinum Neurotoxin Chem. Commun. 2008, 1883-1885 10.1039/b717936g
    • (2008) Chem. Commun. , pp. 1883-1885
    • Tok, J.B.1    Fischer, N.O.2
  • 12
    • 79952131554 scopus 로고    scopus 로고
    • Generation of Highly Specific Aptamers via Micromagnetic Selection (Vol 81, Pg 5490, 2009)
    • Oh, S. S.; Qian, J. R.; Lou, X. H.; Zhang, Y. T.; Xiao, Y.; Soh, H. T. Generation of Highly Specific Aptamers via Micromagnetic Selection (Vol 81, Pg 5490, 2009) Anal. Chem. 2011, 83, 1866 10.1021/ac200033t
    • (2011) Anal. Chem. , vol.83 , pp. 1866
    • Oh, S.S.1    Qian, J.R.2    Lou, X.H.3    Zhang, Y.T.4    Xiao, Y.5    Soh, H.T.6
  • 13
    • 27644440466 scopus 로고    scopus 로고
    • FluMag-SELEX as an Advantageous Method for DNA Aptamer Selection
    • Stoltenburg, R.; Reinemann, C.; Strehlitz, B. FluMag-SELEX as an Advantageous Method for DNA Aptamer Selection Anal. Bioanal. Chem. 2005, 383, 83-91 10.1007/s00216-005-3388-9
    • (2005) Anal. Bioanal. Chem. , vol.383 , pp. 83-91
    • Stoltenburg, R.1    Reinemann, C.2    Strehlitz, B.3
  • 14
    • 34548551398 scopus 로고    scopus 로고
    • SELEX-A (R)evolutionary Method to Generate High-Affinity Nucleic Acid Ligands
    • Stoltenburg, R.; Reinemann, C.; Strehlitz, B. SELEX-A (R)evolutionary Method to Generate High-Affinity Nucleic Acid Ligands Biomol. Eng. 2007, 24, 381-403 10.1016/j.bioeng.2007.06.001
    • (2007) Biomol. Eng. , vol.24 , pp. 381-403
    • Stoltenburg, R.1    Reinemann, C.2    Strehlitz, B.3
  • 15
    • 77957259441 scopus 로고    scopus 로고
    • Quantitative Selection of DNA Aptamers through Microfluidic Selection and High-Throughput Sequencing
    • Cho, M.; Xiao, Y.; Nie, J.; Stewart, R.; Csordas, A. T.; Oh, S. S.; Thomson, J. A.; Soh, H. T. Quantitative Selection of DNA Aptamers through Microfluidic Selection and High-Throughput Sequencing Proc. Natl. Acad. Sci. U. S. A. 2010, 107, 15373-15378 10.1073/pnas.1009331107
    • (2010) Proc. Natl. Acad. Sci. U. S. A. , vol.107 , pp. 15373-15378
    • Cho, M.1    Xiao, Y.2    Nie, J.3    Stewart, R.4    Csordas, A.T.5    Oh, S.S.6    Thomson, J.A.7    Soh, H.T.8
  • 17
    • 83255193503 scopus 로고    scopus 로고
    • Aptamer Selection by High-Throughput Sequencing and Informatic Analysis
    • Hoon, S.; Zhou, B.; Janda, K. D.; Brenner, S.; Scolnick, J. Aptamer Selection by High-Throughput Sequencing and Informatic Analysis BioTechniques 2011, 51, 413-416 10.2144/000113786
    • (2011) BioTechniques , vol.51 , pp. 413-416
    • Hoon, S.1    Zhou, B.2    Janda, K.D.3    Brenner, S.4    Scolnick, J.5
  • 19
    • 79956290589 scopus 로고    scopus 로고
    • Acyclic Identification of Aptamers for Human Alpha-Thrombin Using over-Represented Libraries and Deep Sequencing
    • Kupakuwana, G. V.; Crill, J. E.; McPike, M. P.; Borer, P. N. Acyclic Identification of Aptamers for Human Alpha-Thrombin Using over-Represented Libraries and Deep Sequencing PLoS One 2011, 6, e19395 10.1371/journal.pone.0019395
    • (2011) PLoS One , vol.6 , pp. e19395
    • Kupakuwana, G.V.1    Crill, J.E.2    McPike, M.P.3    Borer, P.N.4
  • 21
    • 84929178904 scopus 로고    scopus 로고
    • More DNA-Aptamers for Small Drugs: A Capture-SELEX Coupled with Surface Plasmon Resonance and High-Throughput Sequencing
    • Spiga, F. M.; Maietta, P.; Guiducci, C. More DNA-Aptamers for Small Drugs: A Capture-SELEX Coupled with Surface Plasmon Resonance and High-Throughput Sequencing ACS Comb. Sci. 2015, 17, 326-333 10.1021/acscombsci.5b00023
    • (2015) ACS Comb. Sci. , vol.17 , pp. 326-333
    • Spiga, F.M.1    Maietta, P.2    Guiducci, C.3
  • 22
    • 84927534316 scopus 로고    scopus 로고
    • Selection of DNA Aptamers for Ovarian Cancer Biomarker HE4 Using CE-SELEX and High-Throughput Sequencing
    • Eaton, R. M.; Shallcross, J. A.; Mael, L. E.; Mears, K. S.; Minkoff, L.; Scoville, D. J.; Whelan, R. J. Selection of DNA Aptamers for Ovarian Cancer Biomarker HE4 Using CE-SELEX and High-Throughput Sequencing Anal. Bioanal. Chem. 2015, 407, 6965-6973 10.1007/s00216-015-8665-7
    • (2015) Anal. Bioanal. Chem. , vol.407 , pp. 6965-6973
    • Eaton, R.M.1    Shallcross, J.A.2    Mael, L.E.3    Mears, K.S.4    Minkoff, L.5    Scoville, D.J.6    Whelan, R.J.7
  • 23
    • 84958534867 scopus 로고    scopus 로고
    • AptaCluster - A Method to Cluster HT-SELEX Aptamer Pools and Lessons from Its Application
    • Hoinka, J.; Berezhnoy, A.; Sauna, Z. E.; Gilboa, E.; Przytycka, T. M. AptaCluster-A Method to Cluster HT-SELEX Aptamer Pools and Lessons from Its Application Lect. Notes Comput. Sci. 2014, 8394, 115-128 10.1007/978-3-319-05269-4-9
    • (2014) Lect. Notes Comput. Sci. , vol.8394 , pp. 115-128
    • Hoinka, J.1    Berezhnoy, A.2    Sauna, Z.E.3    Gilboa, E.4    Przytycka, T.M.5
  • 24
    • 78650430664 scopus 로고    scopus 로고
    • SEWAL: An Open-Source Platform for Next-Generation Sequence Analysis and Visualization
    • Pitt, J. N.; Rajapakse, I.; Ferré-D'Amaré, A. R. SEWAL: An Open-Source Platform for Next-Generation Sequence Analysis and Visualization Nucleic Acids Res. 2010, 38, 7908-7915 10.1093/nar/gkq661
    • (2010) Nucleic Acids Res. , vol.38 , pp. 7908-7915
    • Pitt, J.N.1    Rajapakse, I.2    Ferré-D'Amaré, A.R.3
  • 25
    • 84942106089 scopus 로고    scopus 로고
    • FASTAptamer: A Bioinformatic Toolkit for High-Throughput Sequence Analysis of Combinatorial Selections
    • Alam, K. K.; Chang, J. L.; Burke, D. H. FASTAptamer: A Bioinformatic Toolkit for High-Throughput Sequence Analysis of Combinatorial Selections Mol. Ther. - Nucleic Acids 2015, 4, e230 10.1038/mtna.2015.4
    • (2015) Mol. Ther. - Nucleic Acids , vol.4 , pp. e230
    • Alam, K.K.1    Chang, J.L.2    Burke, D.H.3
  • 26
    • 84959867675 scopus 로고    scopus 로고
    • Analyzing HT-SELEX Data with the Galaxy Project Tools - A Web Based Bioinformatics Platform for Biomedical Research
    • Thiel, W. H.; Giangrande, P. H. Analyzing HT-SELEX Data with the Galaxy Project Tools-A Web Based Bioinformatics Platform for Biomedical Research Methods 2016, 97, 3 10.1016/j.ymeth.2015.10.008
    • (2016) Methods , vol.97 , pp. 3
    • Thiel, W.H.1    Giangrande, P.H.2
  • 27
    • 84988669706 scopus 로고    scopus 로고
    • DNA Sequencing Costs: Data from the NHGRI Genome Sequencing Program (GSP) (accessed Jan 1)
    • Wetterstrand, K. DNA Sequencing Costs: Data from the NHGRI Genome Sequencing Program (GSP) www.genome.gov/sequencingcosts (accessed Jan 1, 2016).
    • (2016)
    • Wetterstrand, K.1
  • 28
    • 62649144233 scopus 로고    scopus 로고
    • Aptamers, Ribozymes, and Deoxyribozymes Identified by in Vitro Selection
    • Silverman, S. K. Aptamers, Ribozymes, and Deoxyribozymes Identified by In Vitro Selection Funct. Nucleic Acids Anal. Appl. 2007, 47-108
    • (2007) Funct. Nucleic Acids Anal. Appl. , pp. 47-108
    • Silverman, S.K.1
  • 29
    • 84907353413 scopus 로고    scopus 로고
    • New Technologies Provide Quantum Changes in the Scale, Speed, and Success of SELEX Methods and Aptamer Characterization
    • Ozer, A.; Pagano, J. M.; Lis, J. T. New Technologies Provide Quantum Changes in the Scale, Speed, and Success of SELEX Methods and Aptamer Characterization Mol. Ther. - Nucleic Acids 2014, 3, e183 10.1038/mtna.2014.34
    • (2014) Mol. Ther. - Nucleic Acids , vol.3 , pp. e183
    • Ozer, A.1    Pagano, J.M.2    Lis, J.T.3
  • 31
    • 38049048268 scopus 로고    scopus 로고
    • Exploring the Sequence Space of a DNA Aptamer Using Microarrays
    • Katilius, E.; Flores, C.; Woodbury, N. W. Exploring the Sequence Space of a DNA Aptamer Using Microarrays Nucleic Acids Res. 2007, 35, 7626-7635 10.1093/nar/gkm922
    • (2007) Nucleic Acids Res. , vol.35 , pp. 7626-7635
    • Katilius, E.1    Flores, C.2    Woodbury, N.W.3
  • 32
    • 50549093336 scopus 로고    scopus 로고
    • Massively Parallel Interrogation of Aptamer Sequence, Structure and Function
    • Fischer, N. O.; Tok, J. B. H.; Tarasow, T. M. Massively Parallel Interrogation of Aptamer Sequence, Structure and Function PLoS One 2008, 3, e2720 10.1371/journal.pone.0002720
    • (2008) PLoS One , vol.3 , pp. e2720
    • Fischer, N.O.1    Tok, J.B.H.2    Tarasow, T.M.3
  • 33
    • 84901804745 scopus 로고    scopus 로고
    • Quantitative Analysis of RNA-Protein Interactions on a Massively Parallel Array Reveals Biophysical and Evolutionary Landscapes
    • Buenrostro, J. D.; Araya, C. L.; Chircus, L. M.; Layton, C. J.; Chang, H. Y.; Snyder, M. P.; Greenleaf, W. J. Quantitative Analysis of RNA-Protein Interactions on a Massively Parallel Array Reveals Biophysical and Evolutionary Landscapes Nat. Biotechnol. 2014, 32, 562-568 10.1038/nbt.2880
    • (2014) Nat. Biotechnol. , vol.32 , pp. 562-568
    • Buenrostro, J.D.1    Araya, C.L.2    Chircus, L.M.3    Layton, C.J.4    Chang, H.Y.5    Snyder, M.P.6    Greenleaf, W.J.7
  • 34
    • 84901830722 scopus 로고    scopus 로고
    • Comprehensive Analysis of RNA-Protein Interactions by High-Throughput Sequencing-RNA Affinity Profiling
    • Tome, J. M.; Ozer, A.; Pagano, J. M.; Gheba, D.; Schroth, G. P.; Lis, J. T. Comprehensive Analysis of RNA-Protein Interactions by High-Throughput Sequencing-RNA Affinity Profiling Nat. Methods 2014, 11, 683-688 10.1038/nmeth.2970
    • (2014) Nat. Methods , vol.11 , pp. 683-688
    • Tome, J.M.1    Ozer, A.2    Pagano, J.M.3    Gheba, D.4    Schroth, G.P.5    Lis, J.T.6
  • 37
    • 0033748716 scopus 로고    scopus 로고
    • Yeast Surface Display for Directed Evolution of Protein Expression, Affinity, and Stability
    • Boder, E. T.; Wittrup, K. D. Yeast Surface Display for Directed Evolution of Protein Expression, Affinity, and Stability Methods Enzymol. 2000, 328, 430-444 10.1016/S0076-6879(00)28410-3
    • (2000) Methods Enzymol. , vol.328 , pp. 430-444
    • Boder, E.T.1    Wittrup, K.D.2
  • 41
    • 66249097058 scopus 로고    scopus 로고
    • Functional Nucleic Acid Sensors
    • Liu, J.; Cao, Z.; Lu, Y. Functional Nucleic Acid Sensors Chem. Rev. 2009, 109, 1948-1998 10.1021/cr030183i
    • (2009) Chem. Rev. , vol.109 , pp. 1948-1998
    • Liu, J.1    Cao, Z.2    Lu, Y.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.