메뉴 건너뛰기




Volumn 407, Issue 23, 2015, Pages 6965-6973

Selection of DNA aptamers for ovarian cancer biomarker HE4 using CE-SELEX and high-throughput sequencing

Author keywords

Aptamer; Biomarker; CE SELEX; HE4; High throughput sequencing; Ovarian cancer

Indexed keywords

BINDING ENERGY; BIOINFORMATICS; CAPILLARY ELECTROPHORESIS; CLONE CELLS; DISEASES; GENE ENCODING; HELIUM; PROBES;

EID: 84927534316     PISSN: 16182642     EISSN: 16182650     Source Type: Journal    
DOI: 10.1007/s00216-015-8665-7     Document Type: Article
Times cited : (63)

References (32)
  • 1
    • 85075497799 scopus 로고    scopus 로고
    • Cancer facts & figures 2014
    • American Cancer Society (2014) Cancer facts & figures 2014
    • (2014)
  • 6
    • 16844374909 scopus 로고    scopus 로고
    • Human epididymis protein 4 (HE4) is a secreted glycoprotein that is overexpressed by serous and endometrioid ovarian carcinomas
    • Drapkin R, von Horsten HH, Lin Y, Mok SC, Crum CP, Welch WR, Hecht JL (2005) Human epididymis protein 4 (HE4) is a secreted glycoprotein that is overexpressed by serous and endometrioid ovarian carcinomas. Cancer Res 65: 2162-2169
    • (2005) Cancer Res , vol.65 , pp. 2162-2169
    • Drapkin, R.1    von Horsten, H.H.2    Lin, Y.3    Mok, S.C.4    Crum, C.P.5    Welch, W.R.6    Hecht, J.L.7
  • 10
    • 0025074907 scopus 로고
    • In vitro selection of RNA molecules that bind specific ligands
    • Ellington AD, Szostak JW (1990) In vitro selection of RNA molecules that bind specific ligands. Nature 346: 818-822
    • (1990) Nature , vol.346 , pp. 818-822
    • Ellington, A.D.1    Szostak, J.W.2
  • 11
    • 0025194307 scopus 로고
    • Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase
    • Tuerk C, Gold L (1990) Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science 249: 505-510
    • (1990) Science , vol.249 , pp. 505-510
    • Tuerk, C.1    Gold, L.2
  • 13
  • 15
    • 33845679081 scopus 로고    scopus 로고
    • Methods developed for SELEX
    • Gopinath SCB (2007) Methods developed for SELEX. Anal Bioanal Chem 387: 171-182
    • (2007) Anal Bioanal Chem , vol.387 , pp. 171-182
    • Gopinath, S.C.B.1
  • 17
    • 0347760143 scopus 로고    scopus 로고
    • In vitro evolution of functional DNA using capillary electrophoresis
    • Mendonsa SD, Bowser MT (2004) In vitro evolution of functional DNA using capillary electrophoresis. J Am Chem Soc 126: 20-21
    • (2004) J Am Chem Soc , vol.126 , pp. 20-21
    • Mendonsa, S.D.1    Bowser, M.T.2
  • 18
    • 14244263708 scopus 로고    scopus 로고
    • Nonequilibrium capillary electrophoresis of equilibrium mixtures: A universal tool for development of aptamers
    • Berezovski M, Drabovich A, Krylova SM, Musheev M, Okhonin V, Petrov A, Krylov SN (2005) Nonequilibrium capillary electrophoresis of equilibrium mixtures: a universal tool for development of aptamers. J Am Chem Soc 127: 3165-3171
    • (2005) J Am Chem Soc , vol.127 , pp. 3165-3171
    • Berezovski, M.1    Drabovich, A.2    Krylova, S.M.3    Musheev, M.4    Okhonin, V.5    Petrov, A.6    Krylov, S.N.7
  • 19
    • 4544303216 scopus 로고    scopus 로고
    • In vitro selection of highaffinity DNA ligands for human IgE using capillary electrophoresis
    • Mendonsa SD, Bowser MT (2004) In vitro selection of highaffinity DNA ligands for human IgE using capillary electrophoresis. Anal Chem 76: 5387-5392
    • (2004) Anal Chem , vol.76 , pp. 5387-5392
    • Mendonsa, S.D.1    Bowser, M.T.2
  • 20
  • 21
    • 39649117755 scopus 로고    scopus 로고
    • The impact of next-generation sequencing technology on genetics
    • Mardis ER (2008) The impact of next-generation sequencing technology on genetics. Trends Genet 24: 133-141
    • (2008) Trends Genet , vol.24 , pp. 133-141
    • Mardis, E.R.1
  • 22
    • 79951475133 scopus 로고    scopus 로고
    • A decade’s perspective on DNA sequencing technology
    • Mardis ER (2011) A decade’s perspective on DNA sequencing technology. Nature 470: 198-203
    • (2011) Nature , vol.470 , pp. 198-203
    • Mardis, E.R.1
  • 23
    • 84888368921 scopus 로고    scopus 로고
    • Tracking the emergence of high affinity aptamers for rhVEGF165 during capillary electrophoresissystematic evolution of ligands by exponential enrichment using high throughput sequencing
    • Jing M, Bowser MT (2013) Tracking the emergence of high affinity aptamers for rhVEGF165 during capillary electrophoresissystematic evolution of ligands by exponential enrichment using high throughput sequencing. Anal Chem 85: 10761-10770
    • (2013) Anal Chem , vol.85 , pp. 10761-10770
    • Jing, M.1    Bowser, M.T.2
  • 25
    • 83255193503 scopus 로고    scopus 로고
    • Aptamer selection by high-throughput sequencing and informatic analysis
    • Hoon S, Zhou B, Janda KD, Brenner S, Scolnick J (2011) Aptamer selection by high-throughput sequencing and informatic analysis. BioTechniques 51: 413-416
    • (2011) BioTechniques , vol.51 , pp. 413-416
    • Hoon, S.1    Zhou, B.2    Janda, K.D.3    Brenner, S.4    Scolnick, J.5
  • 26
    • 33645225909 scopus 로고    scopus 로고
    • Selection of aptamers by systematic evolution of ligands by exponential enrichment: Addressing the polymerase chain reaction issue
    • Musheev MU, Krylov SN (2006) Selection of aptamers by systematic evolution of ligands by exponential enrichment: addressing the polymerase chain reaction issue. Anal Chim Acta 564: 91-96
    • (2006) Anal Chim Acta , vol.564 , pp. 91-96
    • Musheev, M.U.1    Krylov, S.N.2
  • 29
    • 84907513604 scopus 로고    scopus 로고
    • MPBind: A Meta-motif-based statistical framework and pipeline to Predict Binding potential of SELEX-derived aptamers
    • Jiang P, Meyer S, Hou Z, Propson NE, Soh HT, Thomson JA, Stewart R (2014) MPBind: a Meta-motif-based statistical framework and pipeline to Predict Binding potential of SELEX-derived aptamers. Bioinformatics 30: 2665-2667
    • (2014) Bioinformatics , vol.30 , pp. 2665-2667
    • Jiang, P.1    Meyer, S.2    Hou, Z.3    Propson, N.E.4    Soh, H.T.5    Thomson, J.A.6    Stewart, R.7
  • 30
    • 33745634395 scopus 로고    scopus 로고
    • Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences
    • Li W, Godzik A (2006) Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 22: 1658-1659. doi: 10.1093/bioinformatics/btl158
    • (2006) Bioinformatics , vol.22 , pp. 1658-1659
    • Li, W.1    Godzik, A.2
  • 32
    • 84922457803 scopus 로고    scopus 로고
    • Emulsion PCR significantly improves nonequilibrium capillary electrophoresis of equilibrium mixtures-based aptamer selection: Allowing for efficient and rapid selection of aptamer to unmodified ABH2 protein
    • Yufa R, Krylova SM, Bruce C, Bagg EA, Schofield CJ, Krylov SN (2015) Emulsion PCR significantly improves nonequilibrium capillary electrophoresis of equilibrium mixtures-based aptamer selection: allowing for efficient and rapid selection of aptamer to unmodified ABH2 protein. Anal Chem 87: 1411-1419
    • (2015) Anal Chem , vol.87 , pp. 1411-1419
    • Yufa, R.1    Krylova, S.M.2    Bruce, C.3    Bagg, E.A.4    Schofield, C.J.5    Krylov, S.N.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.