메뉴 건너뛰기




Volumn 278, Issue 3, 1998, Pages 579-597

The mathematics of SELEX against complex targets

Author keywords

Combinatorial chemistry; Computer simulations; High throughput screening; RNA; SELEX

Indexed keywords

LIGAND; NUCLEOTIDE;

EID: 17444440621     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1998.1727     Document Type: Article
Times cited : (77)

References (38)
  • 1
    • 0023147228 scopus 로고
    • Selection of DNA binding sites by regulatory proteins: Statistical-mechanical theory and application to operators and promoters
    • Berg O. G., von Hippel P. H. Selection of DNA binding sites by regulatory proteins: statistical-mechanical theory and application to operators and promoters. J. Mol. Biol. 193:1987;723-750.
    • (1987) J. Mol. Biol. , vol.193 , pp. 723-750
    • Berg, O.G.1    Von Hippel, P.H.2
  • 3
    • 0000917638 scopus 로고    scopus 로고
    • In vitro selection of catalytic polynucleotides
    • Breaker R. R. In vitro selection of catalytic polynucleotides. Chem. Rev. 97:1997;371-390.
    • (1997) Chem. Rev. , vol.97 , pp. 371-390
    • Breaker, R.R.1
  • 4
    • 0028806818 scopus 로고
    • Template recognition by an RNA-dependent RNA polymerase: Identification and characterization of two RNA binding sites on Qß replicase
    • Brown D., Gold L. Template recognition by an RNA-dependent RNA polymerase: identification and characterization of two RNA binding sites on Qß replicase. Biochemistry. 34:1995;14765-14774.
    • (1995) Biochemistry , vol.34 , pp. 14765-14774
    • Brown, D.1    Gold, L.2
  • 5
    • 0029859576 scopus 로고    scopus 로고
    • RNA replication by Qß replicase: A working model
    • Brown D., Gold L. RNA replication by Qß replicase: A working model. Proc. Natl Acad. Sci. USA. 93:1996;11558-11562.
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 11558-11562
    • Brown, D.1    Gold, L.2
  • 6
    • 0021111044 scopus 로고
    • Sequence-specific interaction of R17 coat protein with its ribonucleic acid binding site
    • Carey J., Cameron V., de Haseth P., Uhlenbeck O. C. Sequence-specific interaction of R17 coat protein with its ribonucleic acid binding site. Biochemistry. 22:1983;2601-2609.
    • (1983) Biochemistry , vol.22 , pp. 2601-2609
    • Carey, J.1    Cameron, V.2    De Haseth, P.3    Uhlenbeck, O.C.4
  • 8
    • 0030274647 scopus 로고    scopus 로고
    • Genomic sciences and the medicine of tomorrow
    • Drews J. Genomic sciences and the medicine of tomorrow. Nature Biotechnol. 14:1996;1516-1518.
    • (1996) Nature Biotechnol. , vol.14 , pp. 1516-1518
    • Drews, J.1
  • 9
    • 0025074907 scopus 로고
    • In vitro selection of RNA molecules that bind specific ligands
    • Ellington A. D., Szostak J. W. In vitro selection of RNA molecules that bind specific ligands. Nature. 346:1990;818-822.
    • (1990) Nature , vol.346 , pp. 818-822
    • Ellington, A.D.1    Szostak, J.W.2
  • 10
    • 0025744584 scopus 로고
    • 70and NusA Proteins. I. Binding interactions with core RNA polymerase in solution and within the transcription complex
    • 70and NusA Proteins. I. Binding interactions with core RNA polymerase in solution and within the transcription complex. J. Mol. Biol. 220:1991;307-324.
    • (1991) J. Mol. Biol. , vol.220 , pp. 307-324
    • Gill, S.C.1    Weitzel, S.E.2    Von Hippel, P.H.3
  • 11
    • 0029031094 scopus 로고
    • Oligonucleotides as research, diagnostic, and therapeutic agents
    • Gold L. Oligonucleotides as research, diagnostic, and therapeutic agents. J. Biol. Chem. 270:1995;13581-13584.
    • (1995) J. Biol. Chem. , vol.270 , pp. 13581-13584
    • Gold, L.1
  • 12
    • 0031114145 scopus 로고    scopus 로고
    • Keeping pace with genomics through combinatorial chemistry
    • Gold L., Alper J. Keeping pace with genomics through combinatorial chemistry. Nature Biotechnol. 15:1997;297.
    • (1997) Nature Biotechnol. , vol.15 , pp. 297
    • Gold, L.1    Alper, J.2
  • 15
    • 0030250840 scopus 로고    scopus 로고
    • Ribozymes: Aiming at RNA replication and protein synthesis
    • Hager A. J., Pollard J. D. Jr, Szostak J. W. Ribozymes: aiming at RNA replication and protein synthesis. Chem. Biol. 3:1996;717-725.
    • (1996) Chem. Biol. , vol.3 , pp. 717-725
    • Hager, A.J.1    Pollard J.D., Jr.2    Szostak, J.W.3
  • 16
    • 0026325728 scopus 로고
    • SELEXION: Systematic evolution of ligands by exponential enrichment with integrated optimization by nonlinear analysis
    • Irvine D., Tuerk C., Gold L. SELEXION: systematic evolution of ligands by exponential enrichment with integrated optimization by nonlinear analysis. J. Mol. Biol. 222:1991;739-761.
    • (1991) J. Mol. Biol. , vol.222 , pp. 739-761
    • Irvine, D.1    Tuerk, C.2    Gold, L.3
  • 17
    • 0028224199 scopus 로고
    • High resolution molecular discrimination by RNA
    • Jenison R. D., Gill S. C., Pardi A., Polisky B. High resolution molecular discrimination by RNA. Science. 263:1994;1425-1429.
    • (1994) Science , vol.263 , pp. 1425-1429
    • Jenison, R.D.1    Gill, S.C.2    Pardi, A.3    Polisky, B.4
  • 18
    • 0029040284 scopus 로고
    • Search strategies for applied molecular evolution
    • Kauffman S. A., Macready W. G. Search strategies for applied molecular evolution. J. Theoret. Biol. 173:1995;427-440.
    • (1995) J. Theoret. Biol. , vol.173 , pp. 427-440
    • Kauffman, S.A.1    Macready, W.G.2
  • 19
    • 0001211996 scopus 로고
    • Biologically displayed random peptides as reagents in mapping protein-protein interactions
    • Kay B. K. Biologically displayed random peptides as reagents in mapping protein-protein interactions. Persp. Drug Disc. Des. 2:1994;251-268.
    • (1994) Persp. Drug Disc. Des. , vol.2 , pp. 251-268
    • Kay, B.K.1
  • 20
    • 0028191743 scopus 로고
    • All you wanted to know about SELEX
    • Klug S. J., Famulok M. All you wanted to know about SELEX. Mol. Biol. Rep. 20:1994;97-107.
    • (1994) Mol. Biol. Rep. , vol.20 , pp. 97-107
    • Klug, S.J.1    Famulok, M.2
  • 21
    • 0002635393 scopus 로고    scopus 로고
    • Models and search strategies for applied molecular evolution
    • Levitan B. Models and search strategies for applied molecular evolution. Annu. Rep. Combinat. Chem. Mol. Divers. 1:1997;In the press.
    • (1997) Annu. Rep. Combinat. Chem. Mol. Divers. , vol.1
    • Levitan, B.1
  • 22
    • 0029361782 scopus 로고
    • Adaptive walks with noisy fitness measurements
    • Levitan B., Kauffman S. Adaptive walks with noisy fitness measurements. Mol. Divers. 1:1995;53-68.
    • (1995) Mol. Divers. , vol.1 , pp. 53-68
    • Levitan, B.1    Kauffman, S.2
  • 26
    • 0027434310 scopus 로고
    • Selective enrichment of RNA species for tight binding to Escherichia coli rho factor
    • Schneider D., Gold L., Platt T. Selective enrichment of RNA species for tight binding to Escherichia coli rho factor. FASEB J. 7:1993;201-207.
    • (1993) FASEB J. , vol.7 , pp. 201-207
    • Schneider, D.1    Gold, L.2    Platt, T.3
  • 27
    • 0029160643 scopus 로고
    • How to search for RNA structures. Theoretical concepts in evolutionary biotechnology
    • Schuster P. How to search for RNA structures. Theoretical concepts in evolutionary biotechnology. J. Biotechnol. 41:1995;239-257.
    • (1995) J. Biotechnol. , vol.41 , pp. 239-257
    • Schuster, P.1
  • 28
    • 0025112794 scopus 로고
    • Searching for peptide ligands with an epitope library
    • Scott J. K., Smith G. P. Searching for peptide ligands with an epitope library. Science. 249:1990;386-390.
    • (1990) Science , vol.249 , pp. 386-390
    • Scott, J.K.1    Smith, G.P.2
  • 29
    • 0030748055 scopus 로고    scopus 로고
    • Preparation and characterization of libraries for Genomic SELEX
    • Singer B., Shtatland T., Brown D., Gold L. Preparation and characterization of libraries for Genomic SELEX. NAR. 25:1997;781-786.
    • (1997) NAR , vol.25 , pp. 781-786
    • Singer, B.1    Shtatland, T.2    Brown, D.3    Gold, L.4
  • 30
    • 0023678091 scopus 로고
    • Computer methods for analyzing sequence recognition of nucleic acids
    • Stormo G. D. Computer methods for analyzing sequence recognition of nucleic acids. Annu. Rev. Biophys. Biophys. Chem. 17:1988;241-263.
    • (1988) Annu. Rev. Biophys. Biophys. Chem. , vol.17 , pp. 241-263
    • Stormo, G.D.1
  • 31
    • 0025342573 scopus 로고
    • Consensus patterns in DNA
    • Stormo G. D. Consensus patterns in DNA. Methods Enzymol. 183:1990;211-221.
    • (1990) Methods Enzymol. , vol.183 , pp. 211-221
    • Stormo, G.D.1
  • 32
    • 0026077562 scopus 로고
    • Specificity of the mnt protein determined by binding to randomized operators
    • Stormo G. D., Yoshioka M. Specificity of the mnt protein determined by binding to randomized operators. Proc. Natl Acad. Sci. USA. 88:1991;5699-5703.
    • (1991) Proc. Natl Acad. Sci. USA , vol.88 , pp. 5699-5703
    • Stormo, G.D.1    Yoshioka, M.2
  • 33
    • 0029868473 scopus 로고    scopus 로고
    • A mathematical analysis of in vitro molecular selection-amplification
    • Sun F., Galas D., Waterman M. S. A mathematical analysis of in vitro molecular selection-amplification. J. Mol. Biol. 258:1996;650-660.
    • (1996) J. Mol. Biol. , vol.258 , pp. 650-660
    • Sun, F.1    Galas, D.2    Waterman, M.S.3
  • 34
    • 0025194307 scopus 로고
    • Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase
    • Tuerk C., Gold L. Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science. 249:1990;505-510.
    • (1990) Science , vol.249 , pp. 505-510
    • Tuerk, C.1    Gold, L.2
  • 37
    • 0017294219 scopus 로고
    • Adsorbent filters: A new technique for microexperimentation on nucleic acid
    • Yarus M. Adsorbent filters: a new technique for microexperimentation on nucleic acid. Anal. Biochem. 70:1976;346-353.
    • (1976) Anal. Biochem. , vol.70 , pp. 346-353
    • Yarus, M.1
  • 38
    • 0014802237 scopus 로고
    • On the properties and utility of a membrane filter assay in the study of isoleucyl-tRNA synthetase
    • Yarus M., Berg P. On the properties and utility of a membrane filter assay in the study of isoleucyl-tRNA synthetase. Anal. Biochem. 35:1970;450-465.
    • (1970) Anal. Biochem. , vol.35 , pp. 450-465
    • Yarus, M.1    Berg, P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.