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Volumn , Issue , 2016, Pages 3232-3238

CRISPR guide RNA design for research applications

Author keywords

bioinformatics; CRISPR Cas9; CRISPRa; CRISPRi; gene editing; genome annotation; genome engineering

Indexed keywords

GUIDE RNA;

EID: 84986216625     PISSN: 1742464X     EISSN: 17424658     Source Type: Journal    
DOI: 10.1111/febs.13777     Document Type: Review
Times cited : (81)

References (40)
  • 1
    • 45749145124 scopus 로고    scopus 로고
    • Zinc-finger nucleases: the next generation emerges
    • Cathomen T & Joung JK (2008) Zinc-finger nucleases: the next generation emerges. Mol Ther 16, 1200–1207.
    • (2008) Mol Ther , vol.16 , pp. 1200-1207
    • Cathomen, T.1    Joung, J.K.2
  • 2
    • 84871519181 scopus 로고    scopus 로고
    • TALENs: a widely applicable technology for targeted genome editing
    • Joung JK & Sander JD (2013) TALENs: a widely applicable technology for targeted genome editing. Nat Rev Mol Cell Biol 14, 49–55.
    • (2013) Nat Rev Mol Cell Biol , vol.14 , pp. 49-55
    • Joung, J.K.1    Sander, J.D.2
  • 3
    • 84954214717 scopus 로고    scopus 로고
    • Biology and applications of CRISPR systems: harnessing nature's toolbox for genome engineering
    • Wright AV, Nunez JK & Doudna JA (2016) Biology and applications of CRISPR systems: harnessing nature's toolbox for genome engineering. Cell 164, 29–44.
    • (2016) Cell , vol.164 , pp. 29-44
    • Wright, A.V.1    Nunez, J.K.2    Doudna, J.A.3
  • 5
    • 84900314611 scopus 로고    scopus 로고
    • CRISPR-Cas systems for editing, regulating and targeting genomes
    • Sander JD & Joung JK (2014) CRISPR-Cas systems for editing, regulating and targeting genomes. Nat Biotechnol 32, 347–355.
    • (2014) Nat Biotechnol , vol.32 , pp. 347-355
    • Sander, J.D.1    Joung, J.K.2
  • 6
    • 84865070369 scopus 로고    scopus 로고
    • A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
    • Jinek M, Chylinski K, Fonfara I, Hauer M, Doudna JA & Charpentier E (2012) A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science 337, 816–821.
    • (2012) Science , vol.337 , pp. 816-821
    • Jinek, M.1    Chylinski, K.2    Fonfara, I.3    Hauer, M.4    Doudna, J.A.5    Charpentier, E.6
  • 11
    • 84923221641 scopus 로고    scopus 로고
    • Unbiased detection of off-target cleavage by CRISPR-Cas9 and TALENs using integrase-defective lentiviral vectors
    • Wang X, Wang Y, Wu X, Wang J, Wang Y, Qiu Z, Chang T, Huang H, Lin RJ & Yee JK (2015) Unbiased detection of off-target cleavage by CRISPR-Cas9 and TALENs using integrase-defective lentiviral vectors. Nat Biotechnol 33, 175–178.
    • (2015) Nat Biotechnol , vol.33 , pp. 175-178
    • Wang, X.1    Wang, Y.2    Wu, X.3    Wang, J.4    Wang, Y.5    Qiu, Z.6    Chang, T.7    Huang, H.8    Lin, R.J.9    Yee, J.K.10
  • 12
    • 84960392032 scopus 로고    scopus 로고
    • Genome-wide target specificities of CRISPR-Cas9 nucleases revealed by multiplex Digenome-seq
    • Kim D, Kim S, Kim S, Park J & Kim JS (2016) Genome-wide target specificities of CRISPR-Cas9 nucleases revealed by multiplex Digenome-seq. Genome Res 26, 406–415.
    • (2016) Genome Res , vol.26 , pp. 406-415
    • Kim, D.1    Kim, S.2    Kim, S.3    Park, J.4    Kim, J.S.5
  • 14
    • 84962978225 scopus 로고    scopus 로고
    • Potential pitfalls of CRISPR/Cas9-mediated genome editing
    • Peng R, Lin G & Li J (2015) Potential pitfalls of CRISPR/Cas9-mediated genome editing. FEBS J 283, 1218–1231.
    • (2015) FEBS J , vol.283 , pp. 1218-1231
    • Peng, R.1    Lin, G.2    Li, J.3
  • 15
    • 84927649779 scopus 로고    scopus 로고
    • Genetic screens and functional genomics using CRISPR/Cas9 technology
    • Hartenian E & Doench JG (2015) Genetic screens and functional genomics using CRISPR/Cas9 technology. FEBS J 282, 1383–1393.
    • (2015) FEBS J , vol.282 , pp. 1383-1393
    • Hartenian, E.1    Doench, J.G.2
  • 16
    • 84911465571 scopus 로고    scopus 로고
    • Target specificity of the CRISPR-Cas9 system
    • Wu X, Kriz AJ & Sharp PA (2014) Target specificity of the CRISPR-Cas9 system. Quant Biol 2, 59–70.
    • (2014) Quant Biol , vol.2 , pp. 59-70
    • Wu, X.1    Kriz, A.J.2    Sharp, P.A.3
  • 18
    • 84926433352 scopus 로고    scopus 로고
    • Dramatic enhancement of genome editing by CRISPR/Cas9 through improved guide RNA design
    • Farboud B & Meyer BJ (2015) Dramatic enhancement of genome editing by CRISPR/Cas9 through improved guide RNA design. Genetics 199, 959–971.
    • (2015) Genetics , vol.199 , pp. 959-971
    • Farboud, B.1    Meyer, B.J.2
  • 22
    • 84874687019 scopus 로고    scopus 로고
    • Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression
    • Qi LS, Larson MH, Gilbert LA, Doudna JA, Weissman JS, Arkin AP & Lim WA (2013) Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression. Cell 152, 1173–1183.
    • (2013) Cell , vol.152 , pp. 1173-1183
    • Qi, L.S.1    Larson, M.H.2    Gilbert, L.A.3    Doudna, J.A.4    Weissman, J.S.5    Arkin, A.P.6    Lim, W.A.7
  • 23
    • 84969920033 scopus 로고    scopus 로고
    • Effective knockdown of Drosophila long non-coding RNAs by CRISPR interference
    • Ghosh S, Tibbit C & Liu JL (2016) Effective knockdown of Drosophila long non-coding RNAs by CRISPR interference. Nucleic Acids Res 44, e84.
    • (2016) Nucleic Acids Res , vol.44
    • Ghosh, S.1    Tibbit, C.2    Liu, J.L.3
  • 28
    • 84893287073 scopus 로고    scopus 로고
    • E-CRISP: fast CRISPR target site identification
    • Heigwer F, Kerr G & Boutros M (2014) E-CRISP: fast CRISPR target site identification. Nat Methods 11, 122–123.
    • (2014) Nat Methods , vol.11 , pp. 122-123
    • Heigwer, F.1    Kerr, G.2    Boutros, M.3
  • 30
    • 84929142256 scopus 로고    scopus 로고
    • CRISPRdirect: software for designing CRISPR/Cas guide RNA with reduced off-target sites
    • Naito Y, Hino K, Bono H & Ui-Tei K (2015) CRISPRdirect: software for designing CRISPR/Cas guide RNA with reduced off-target sites. Bioinformatics 31, 1120–1123.
    • (2015) Bioinformatics , vol.31 , pp. 1120-1123
    • Naito, Y.1    Hino, K.2    Bono, H.3    Ui-Tei, K.4
  • 31
    • 84945182299 scopus 로고    scopus 로고
    • CRISPR-ERA: a comprehensive design tool for CRISPR-mediated gene editing, repression and activation
    • Liu H, Wei Z, Dominguez A, Li Y, Wang X & Qi LS (2015) CRISPR-ERA: a comprehensive design tool for CRISPR-mediated gene editing, repression and activation. Bioinformatics 31, 3676–3678.
    • (2015) Bioinformatics , vol.31 , pp. 3676-3678
    • Liu, H.1    Wei, Z.2    Dominguez, A.3    Li, Y.4    Wang, X.5    Qi, L.S.6
  • 32
    • 84953297519 scopus 로고    scopus 로고
    • CRISPR technology for genome activation and repression in mammalian cells
    • pdb.prot090175.
    • Du D & Qi LS (2016) CRISPR technology for genome activation and repression in mammalian cells. Cold Spring Harb Protoc 2016, pdb.prot090175.
    • (2016) Cold Spring Harb Protoc , vol.2016
    • Du, D.1    Qi, L.S.2
  • 34
    • 84892749369 scopus 로고    scopus 로고
    • Genetic screens in human cells using the CRISPR-Cas9 system
    • Wang T, Wei JJ, Sabatini DM & Lander ES (2014) Genetic screens in human cells using the CRISPR-Cas9 system. Science 343, 80–84.
    • (2014) Science , vol.343 , pp. 80-84
    • Wang, T.1    Wei, J.J.2    Sabatini, D.M.3    Lander, E.S.4
  • 35
    • 84930939029 scopus 로고    scopus 로고
    • Discovery of cancer drug targets by CRISPR-Cas9 screening of protein domains
    • Shi J, Wang E, Milazzo JP, Wang Z, Kinney JB & Vakoc CR (2015) Discovery of cancer drug targets by CRISPR-Cas9 screening of protein domains. Nat Biotechnol 33, 661–667.
    • (2015) Nat Biotechnol , vol.33 , pp. 661-667
    • Shi, J.1    Wang, E.2    Milazzo, J.P.3    Wang, Z.4    Kinney, J.B.5    Vakoc, C.R.6
  • 40
    • 84903516238 scopus 로고    scopus 로고
    • Microhomology-based choice of Cas9 nuclease target sites
    • Bae S, Kweon J, Kim HS & Kim JS (2014) Microhomology-based choice of Cas9 nuclease target sites. Nat Methods 11, 705–706.
    • (2014) Nat Methods , vol.11 , pp. 705-706
    • Bae, S.1    Kweon, J.2    Kim, H.S.3    Kim, J.S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.