-
1
-
-
34250725542
-
Identification of bacterial small non-coding RNAs: experimental approaches
-
Altuvia, S. (2007) Identification of bacterial small non-coding RNAs: experimental approaches. Curr Opin Microbiol 10: 257–261.
-
(2007)
Curr Opin Microbiol
, vol.10
, pp. 257-261
-
-
Altuvia, S.1
-
2
-
-
0035954304
-
Novel small RNA-encoding genes in the intergenic regions of Escherichia coli
-
Argaman, L., Hershberg, R., Vogel, J., Bejerano, G., Wagner, E.G., Margalit, H. and Altuvia, S. (2001) Novel small RNA-encoding genes in the intergenic regions of Escherichia coli. Curr Biol 11: 941–950.
-
(2001)
Curr Biol
, vol.11
, pp. 941-950
-
-
Argaman, L.1
Hershberg, R.2
Vogel, J.3
Bejerano, G.4
Wagner, E.G.5
Margalit, H.6
Altuvia, S.7
-
3
-
-
84948763782
-
Accelerating Discovery and Functional Analysis of Small RNAs with New Technologies
-
Barquist, L., and J. Vogel, (2015) Accelerating Discovery and Functional Analysis of Small RNAs with New Technologies. Annu Rev Genet 49: 367–394.
-
(2015)
Annu Rev Genet
, vol.49
, pp. 367-394
-
-
Barquist, L.1
Vogel, J.2
-
4
-
-
80053226878
-
The RpoS-mediated general stress response in Escherichia coli
-
Battesti, A., N. Majdalani, and S. Gottesman, (2011) The RpoS-mediated general stress response in Escherichia coli. Annu Rev Microbiol 65: 189–213.
-
(2011)
Annu Rev Microbiol
, vol.65
, pp. 189-213
-
-
Battesti, A.1
Majdalani, N.2
Gottesman, S.3
-
5
-
-
0037371179
-
HilE interacts with HilD and negatively regulates hilA transcription and expression of the Salmonella enterica serovar Typhimurium invasive phenotype
-
Baxter, M.A., T.F. Fahlen, R.L. Wilson, and B.D. Jones, (2003) HilE interacts with HilD and negatively regulates hilA transcription and expression of the Salmonella enterica serovar Typhimurium invasive phenotype. Infect Immun 71: 1295–1305.
-
(2003)
Infect Immun
, vol.71
, pp. 1295-1305
-
-
Baxter, M.A.1
Fahlen, T.F.2
Wilson, R.L.3
Jones, B.D.4
-
6
-
-
0023924209
-
Cell division inhibition gene dicB is regulated by a locus similar to lambdoid bacteriophage immunity loci
-
Bejar, S., F. Bouche, and J.P. Bouche, (1988) Cell division inhibition gene dicB is regulated by a locus similar to lambdoid bacteriophage immunity loci. Mol Gen Genet 212: 11–19.
-
(1988)
Mol Gen Genet
, vol.212
, pp. 11-19
-
-
Bejar, S.1
Bouche, F.2
Bouche, J.P.3
-
7
-
-
0036077023
-
Identification of an aggregative adhesion fimbria (AAF) type III-encoding operon in enteroaggregative Escherichia coli as a sensitive probe for detecting the AAF-encoding operon family
-
Bernier, C., P. Gounon, and C. Le Bouguenec, (2002) Identification of an aggregative adhesion fimbria (AAF) type III-encoding operon in enteroaggregative Escherichia coli as a sensitive probe for detecting the AAF-encoding operon family. Infect Immun 70: 4302–4311.
-
(2002)
Infect Immun
, vol.70
, pp. 4302-4311
-
-
Bernier, C.1
Gounon, P.2
Le Bouguenec, C.3
-
8
-
-
0024365785
-
Genetic evidence that DicF, a second division inhibitor encoded by the Escherichia coli dicB operon, is probably RNA
-
Bouche, F., and Bouche, J.P. (1989) Genetic evidence that DicF, a second division inhibitor encoded by the Escherichia coli dicB operon, is probably RNA. Mol Microbiol 3: 991–994.
-
(1989)
Mol Microbiol
, vol.3
, pp. 991-994
-
-
Bouche, F.1
Bouche, J.P.2
-
9
-
-
57149111586
-
Small RNA binding to 5' mRNA coding region inhibits translational initiation
-
Bouvier, M., Sharma, C.M., Mika, F. Nierhaus, K.H. and Vogel, J. (2008) Small RNA binding to 5' mRNA coding region inhibits translational initiation. Mol Cell 32: 827–837.
-
(2008)
Mol Cell
, vol.32
, pp. 827-837
-
-
Bouvier, M.1
Sharma, C.M.2
Mika, F.3
Nierhaus, K.H.4
Vogel, J.5
-
10
-
-
79960967875
-
A genome-wide approach to discovery of small RNAs involved in regulation of virulence in Vibrio cholerae
-
Bradley, E.S., Bodi, K., Ismail, A.M., and Camilli, A. (2011) A genome-wide approach to discovery of small RNAs involved in regulation of virulence in Vibrio cholerae. PLoS Pathog 7: e1002126.
-
(2011)
PLoS Pathog
, vol.7
-
-
Bradley, E.S.1
Bodi, K.2
Ismail, A.M.3
Camilli, A.4
-
11
-
-
84940111502
-
Plasmid Replication Control by Antisense RNAs
-
PLAS–0001−2013
-
Brantl, S. (2014) Plasmid Replication Control by Antisense RNAs. Microbiol Spectr 2: PLAS–0001−2013.
-
(2014)
Microbiol Spectr
, vol.2
-
-
Brantl, S.1
-
12
-
-
4544321685
-
Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion
-
table of contents
-
Brussow, H., Canchaya, C., and Hardt, W.D. (2004) Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion. Microbiol Mol Biol Rev 68: 560–602, table of contents.
-
(2004)
Microbiol Mol Biol Rev
, vol.68
, pp. 560-602
-
-
Brussow, H.1
Canchaya, C.2
Hardt, W.D.3
-
13
-
-
84932107470
-
Towards an integrated model of bacterial conjugation
-
Cabezon, E., Ripoll-Rozada, J., Pena, A., de la Cruz, F., and Arechaga, I. (2015) Towards an integrated model of bacterial conjugation. FEMS Microbiol Rev 39: 81–95.
-
(2015)
FEMS Microbiol Rev
, vol.39
, pp. 81-95
-
-
Cabezon, E.1
Ripoll-Rozada, J.2
Pena, A.3
de la Cruz, F.4
Arechaga, I.5
-
14
-
-
84893801940
-
Role of Salmonella Typhimurium small RNAs RyhB-1 and RyhB-2 in the oxidative stress response
-
Calderon, I.L., Morales, E.H., Collao, B., Calderon, P.F., Chahuan, C.A., Acuna, L.G., et al. (2014a) Role of Salmonella Typhimurium small RNAs RyhB-1 and RyhB-2 in the oxidative stress response. Res Microbiol 165: 30–40.
-
(2014)
Res Microbiol
, vol.165
, pp. 30-40
-
-
Calderon, I.L.1
Morales, E.H.2
Collao, B.3
Calderon, P.F.4
Chahuan, C.A.5
Acuna, L.G.6
-
15
-
-
84904721020
-
The small RNA RyhB homologs from Salmonella typhimurium participate in the response to S-nitrosoglutathione-induced stress
-
Calderon, P.F., Morales, E.H., Acuna, L.G., Fuentes, D.N., Gil, F., Porwollik, S., et al. (2014b) The small RNA RyhB homologs from Salmonella typhimurium participate in the response to S-nitrosoglutathione-induced stress. Biochem Biophys Res Commun 450: 641–645.
-
(2014)
Biochem Biophys Res Commun
, vol.450
, pp. 641-645
-
-
Calderon, P.F.1
Morales, E.H.2
Acuna, L.G.3
Fuentes, D.N.4
Gil, F.5
Porwollik, S.6
-
16
-
-
48649107476
-
The type VI secretion toolkit
-
Cascales, E. (2008) The type VI secretion toolkit. EMBO Rep 9: 735–741.
-
(2008)
EMBO Rep
, vol.9
, pp. 735-741
-
-
Cascales, E.1
-
17
-
-
30744444985
-
Novel mechanism of Escherichia coli porin regulation
-
Castillo-Keller, M., Vuong, P., and Misra, R. (2006) Novel mechanism of Escherichia coli porin regulation. J Bacteriol 188: 576–586.
-
(2006)
J Bacteriol
, vol.188
, pp. 576-586
-
-
Castillo-Keller, M.1
Vuong, P.2
Misra, R.3
-
18
-
-
84907029678
-
6S RNA, a global regulator of transcription in Escherichia coli, Bacillus subtilis, and beyond
-
Cavanagh, A.T., and Wassarman, K.M. (2014) 6S RNA, a global regulator of transcription in Escherichia coli, Bacillus subtilis, and beyond. Annu Rev Microbiol 68: 45–60.
-
(2014)
Annu Rev Microbiol
, vol.68
, pp. 45-60
-
-
Cavanagh, A.T.1
Wassarman, K.M.2
-
19
-
-
84957427381
-
A 3' UTR-derived small RNA provides the regulatory noncoding arm of the inner membrane stress response
-
Chao, Y., and Vogel, J. (2016) A 3' UTR-derived small RNA provides the regulatory noncoding arm of the inner membrane stress response. Mol Cell 61: 352–363.
-
(2016)
Mol Cell
, vol.61
, pp. 352-363
-
-
Chao, Y.1
Vogel, J.2
-
20
-
-
84867577054
-
An atlas of Hfq-bound transcripts reveals 3' UTRs as a genomic reservoir of regulatory small RNAs
-
Chao, Y., Papenfort, K., Reinhardt, R., Sharma, C.M., and Vogel, J. (2012) An atlas of Hfq-bound transcripts reveals 3' UTRs as a genomic reservoir of regulatory small RNAs. EMBO J 31: 4005–4019.
-
(2012)
EMBO J
, vol.31
, pp. 4005-4019
-
-
Chao, Y.1
Papenfort, K.2
Reinhardt, R.3
Sharma, C.M.4
Vogel, J.5
-
21
-
-
84876848287
-
Comprehensive assignment of roles for Salmonella typhimurium genes in intestinal colonization of food-producing animals
-
Chaudhuri, R.R., Morgan, E., Peters, S.E., Pleasance, S.J., Hudson, D.L., Davies, H.M., et al. (2013) Comprehensive assignment of roles for Salmonella typhimurium genes in intestinal colonization of food-producing animals. PLoS Genet 9: e1003456.
-
(2013)
PLoS Genet
, vol.9
-
-
Chaudhuri, R.R.1
Morgan, E.2
Peters, S.E.3
Pleasance, S.J.4
Hudson, D.L.5
Davies, H.M.6
-
22
-
-
77957802374
-
Studying bacterial transcriptomes using RNA-seq
-
Croucher, N.J., and Thomson, N.R. (2010) Studying bacterial transcriptomes using RNA-seq. Curr Opin Microbiol 13: 619–624.
-
(2010)
Curr Opin Microbiol
, vol.13
, pp. 619-624
-
-
Croucher, N.J.1
Thomson, N.R.2
-
23
-
-
34247567492
-
An antisense RNA inhibits translation by competing with standby ribosomes
-
Darfeuille, F., Unoson, C., Vogel, J., and Wagner, E.G. (2007) An antisense RNA inhibits translation by competing with standby ribosomes. Mol Cell 26: 381–392.
-
(2007)
Mol Cell
, vol.26
, pp. 381-392
-
-
Darfeuille, F.1
Unoson, C.2
Vogel, J.3
Wagner, E.G.4
-
24
-
-
84875457350
-
Bacterial small RNA-based negative regulation: Hfq and its accomplices
-
De Lay, N., Schu, D.J., and Gottesman, S. (2013) Bacterial small RNA-based negative regulation: Hfq and its accomplices. J Biol Chem 288: 7996–8003.
-
(2013)
J Biol Chem
, vol.288
, pp. 7996-8003
-
-
De Lay, N.1
Schu, D.J.2
Gottesman, S.3
-
25
-
-
84859365433
-
Noncanonical repression of translation initiation through small RNA recruitment of the RNA chaperone Hfq
-
Desnoyers, G., and Masse, E. (2012) Noncanonical repression of translation initiation through small RNA recruitment of the RNA chaperone Hfq. Genes Dev 26: 726–739.
-
(2012)
Genes Dev
, vol.26
, pp. 726-739
-
-
Desnoyers, G.1
Masse, E.2
-
26
-
-
2442449227
-
Genomic islands in pathogenic and environmental microorganisms
-
Dobrindt, U., Hochhut, B., Hentschel, U., and Hacker, J. (2004) Genomic islands in pathogenic and environmental microorganisms. Nat Rev Microbiol 2: 414–424.
-
(2004)
Nat Rev Microbiol
, vol.2
, pp. 414-424
-
-
Dobrindt, U.1
Hochhut, B.2
Hentschel, U.3
Hacker, J.4
-
27
-
-
77955551635
-
Genome dynamics and its impact on evolution of Escherichia coli
-
Dobrindt, U., Chowdary, M.G., Krumbholz, G., and Hacker, J. (2010) Genome dynamics and its impact on evolution of Escherichia coli. Med Microbiol Immunol 199: 145–154.
-
(2010)
Med Microbiol Immunol
, vol.199
, pp. 145-154
-
-
Dobrindt, U.1
Chowdary, M.G.2
Krumbholz, G.3
Hacker, J.4
-
28
-
-
63849316449
-
Regulatory integration of horizontally-transferred genes in bacteria
-
Dorman, C.J. (2009) Regulatory integration of horizontally-transferred genes in bacteria. Front Biosci (Landmark Ed) 14: 4103–4112.
-
(2009)
Front Biosci (Landmark Ed)
, vol.14
, pp. 4103-4112
-
-
Dorman, C.J.1
-
29
-
-
77349104885
-
Reprogramming of anaerobic metabolism by the FnrS small RNA
-
Durand, S., and Storz, G. (2010) Reprogramming of anaerobic metabolism by the FnrS small RNA. Mol Microbiol 75: 1215–1231.
-
(2010)
Mol Microbiol
, vol.75
, pp. 1215-1231
-
-
Durand, S.1
Storz, G.2
-
30
-
-
38749084963
-
Fur regulates expression of the Salmonella pathogenicity island 1 type III secretion system through HilD
-
Ellermeier, J.R., and Slauch, J.M. (2008) Fur regulates expression of the Salmonella pathogenicity island 1 type III secretion system through HilD. J Bacteriol 190: 476–486.
-
(2008)
J Bacteriol
, vol.190
, pp. 476-486
-
-
Ellermeier, J.R.1
Slauch, J.M.2
-
31
-
-
0028008417
-
Division inhibition gene dicF of Escherichia coli reveals a widespread group of prophage sequences in bacterial genomes
-
Faubladier, M., and Bouche, J.P. (1994) Division inhibition gene dicF of Escherichia coli reveals a widespread group of prophage sequences in bacterial genomes. J Bacteriol 176: 1150–1156.
-
(1994)
J Bacteriol
, vol.176
, pp. 1150-1156
-
-
Faubladier, M.1
Bouche, J.P.2
-
32
-
-
0025355785
-
Escherichia coli cell division inhibitor DicF-RNA of the dicB operon. Evidence for its generation in vivo by transcription termination and by RNase III and RNase E-dependent processing
-
Faubladier, M., Cam, K., and Bouche, J.P. (1990) Escherichia coli cell division inhibitor DicF-RNA of the dicB operon. Evidence for its generation in vivo by transcription termination and by RNase III and RNase E-dependent processing. J Mol Biol 212: 461471.
-
(1990)
J Mol Biol
, vol.212
, pp. 461471
-
-
Faubladier, M.1
Cam, K.2
Bouche, J.P.3
-
33
-
-
84920992591
-
A qrr noncoding RNA deploys four different regulatory mechanisms to optimize quorum-sensing dynamics
-
Feng, L., Rutherford, S.T., Papenfort, K., Bagert, J.D., van Kessel, J.C., Tirrell, D.A., et al. (2015) A qrr noncoding RNA deploys four different regulatory mechanisms to optimize quorum-sensing dynamics. Cell 160: 228–240.
-
(2015)
Cell
, vol.160
, pp. 228-240
-
-
Feng, L.1
Rutherford, S.T.2
Papenfort, K.3
Bagert, J.D.4
van Kessel, J.C.5
Tirrell, D.A.6
-
34
-
-
84858860817
-
A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD
-
Fröhlich, K.S., Papenfort, K., Berger, A.A., and Vogel, J. (2012) A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD. Nucleic Acids Res 40: 3623–3640.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 3623-3640
-
-
Fröhlich, K.S.1
Papenfort, K.2
Berger, A.A.3
Vogel, J.4
-
35
-
-
84887826391
-
A small RNA activates CFA synthase by isoform-specific mRNA stabilization
-
Fröhlich, K.S., Papenfort, K., Fekete, A., and Vogel, J. (2013) A small RNA activates CFA synthase by isoform-specific mRNA stabilization. EMBO J 32: 2963–2979.
-
(2013)
EMBO J
, vol.32
, pp. 2963-2979
-
-
Fröhlich, K.S.1
Papenfort, K.2
Fekete, A.3
Vogel, J.4
-
36
-
-
79958047291
-
cis-antisense RNA, another level of gene regulation in bacteria
-
Georg, J., and Hess, W.R. (2011) cis-antisense RNA, another level of gene regulation in bacteria. Microbiol Mol Biol Rev 75: 286–300.
-
(2011)
Microbiol Mol Biol Rev
, vol.75
, pp. 286-300
-
-
Georg, J.1
Hess, W.R.2
-
37
-
-
84921283583
-
BREX is a novel phage resistance system widespread in microbial genomes
-
Goldfarb, T., Sberro, H., Weinstock, E., Cohen, O., Doron, S., Charpak-Amikam, Y., et al. (2015) BREX is a novel phage resistance system widespread in microbial genomes. EMBO J 34: 169–183.
-
(2015)
EMBO J
, vol.34
, pp. 169-183
-
-
Goldfarb, T.1
Sberro, H.2
Weinstock, E.3
Cohen, O.4
Doron, S.5
Charpak-Amikam, Y.6
-
38
-
-
80053458416
-
A Salmonella small non-coding RNA facilitates bacterial invasion and intracellular replication by modulating the expression of virulence factors
-
Gong, H., Vu, G.P., Bai, Y., Chan, E., Wu, R., Yang, E., et al. (2011) A Salmonella small non-coding RNA facilitates bacterial invasion and intracellular replication by modulating the expression of virulence factors. PLoS Pathog 7: e1002120.
-
(2011)
PLoS Pathog
, vol.7
-
-
Gong, H.1
Vu, G.P.2
Bai, Y.3
Chan, E.4
Wu, R.5
Yang, E.6
-
39
-
-
84920056771
-
The significance of pneumococcal types
-
Griffith, F. (1928) The significance of pneumococcal types. J Hyg (Lond) 27: 113–159.
-
(1928)
J Hyg (Lond)
, vol.27
, pp. 113-159
-
-
Griffith, F.1
-
40
-
-
84904362234
-
MicL, a new sigmaE-dependent sRNA, combats envelope stress by repressing synthesis of Lpp, the major outer membrane lipoprotein
-
Guo, M.S., Updegrove, T.B., Gogol, E.B., Shabalina, S.A., Gross, C.A., and Storz, G. (2014) MicL, a new sigmaE-dependent sRNA, combats envelope stress by repressing synthesis of Lpp, the major outer membrane lipoprotein. Genes Dev 28: 1620–1634.
-
(2014)
Genes Dev
, vol.28
, pp. 1620-1634
-
-
Guo, M.S.1
Updegrove, T.B.2
Gogol, E.B.3
Shabalina, S.A.4
Gross, C.A.5
Storz, G.6
-
41
-
-
0035961748
-
Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12
-
Hayashi, T., Makino, K., Ohnishi, M., Kurokawa, K., Ishii, K., Yokoyama, K., et al. (2001) Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. DNA Res 8: 11–22.
-
(2001)
DNA Res
, vol.8
, pp. 11-22
-
-
Hayashi, T.1
Makino, K.2
Ohnishi, M.3
Kurokawa, K.4
Ishii, K.5
Yokoyama, K.6
-
42
-
-
84860774336
-
sRNAs and the virulence of Salmonella enterica serovar Typhimurium. RNA
-
Hebrard, M., Kroger, C., Srikumar, S., Colgan, A., Handler, K., and Hinton, J.C. (2012) sRNAs and the virulence of Salmonella enterica serovar Typhimurium. RNA Biol 9: 437–445.
-
(2012)
Biol
, vol.9
, pp. 437-445
-
-
Hebrard, M.1
Kroger, C.2
Srikumar, S.3
Colgan, A.4
Handler, K.5
Hinton, J.C.6
-
43
-
-
4644369350
-
Evolution of pathogenicity islands of Salmonella enterica
-
Hensel, M. (2004) Evolution of pathogenicity islands of Salmonella enterica. Int J Med Microbiol 294: 95–102.
-
(2004)
Int J Med Microbiol
, vol.294
, pp. 95-102
-
-
Hensel, M.1
-
44
-
-
84964883387
-
Gifsy-1 prophage IsrK with dual function as small and messenger RNA modulates vital bacterial machineries
-
Hershko–Shalev, T., Odenheimer-Bergman, A., Elgrably-Weiss, M., Ben-Zvi, T., Govindarajan, S., Seri, H., et al. (2016) Gifsy-1 prophage IsrK with dual function as small and messenger RNA modulates vital bacterial machineries. PLoS Genet 12: e1005975.
-
(2016)
PLoS Genet
, vol.12
-
-
Hershko–Shalev, T.1
Odenheimer-Bergman, A.2
Elgrably-Weiss, M.3
Ben-Zvi, T.4
Govindarajan, S.5
Seri, H.6
-
45
-
-
70449700233
-
Homologs of the small RNA SgrS are broadly distributed in enteric bacteria but have diverged in size and sequence
-
Horler, R.S., and Vanderpool, C.K. (2009) Homologs of the small RNA SgrS are broadly distributed in enteric bacteria but have diverged in size and sequence. Nucleic Acids Res 37: 5465–5476.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 5465-5476
-
-
Horler, R.S.1
Vanderpool, C.K.2
-
46
-
-
84894093468
-
Bacterial transformation: distribution, shared mechanisms and divergent control
-
Johnston, C., Martin, B., Fichant, G., Polard, P., and Claverys, J.P. (2014) Bacterial transformation: distribution, shared mechanisms and divergent control. Nat Rev Microbiol 12: 181–196.
-
(2014)
Nat Rev Microbiol
, vol.12
, pp. 181-196
-
-
Johnston, C.1
Martin, B.2
Fichant, G.3
Polard, P.4
Claverys, J.P.5
-
47
-
-
84921776252
-
Horizontal gene transfer in human pathogens
-
Juhas, M. (2015) Horizontal gene transfer in human pathogens. Crit Rev Microbiol 41: 101–108.
-
(2015)
Crit Rev Microbiol
, vol.41
, pp. 101-108
-
-
Juhas, M.1
-
48
-
-
84884987724
-
Identification of target transcripts regulated by small RNA RyhB homologs in Salmonella: RyhB-2 regulates motility phenotype
-
Kim, J.N., and Kwon, Y.M. (2013) Identification of target transcripts regulated by small RNA RyhB homologs in Salmonella: RyhB-2 regulates motility phenotype. Microbiol Res 168: 621–629.
-
(2013)
Microbiol Res
, vol.168
, pp. 621-629
-
-
Kim, J.N.1
Kwon, Y.M.2
-
49
-
-
0038385185
-
Secretion of a soluble colonization factor by the TCP type 4 pilus biogenesis pathway in Vibrio cholerae
-
Kirn, T.J., Bose, N., and Taylor, R.K. (2003) Secretion of a soluble colonization factor by the TCP type 4 pilus biogenesis pathway in Vibrio cholerae. Mol Microbiol 49: 81–92.
-
(2003)
Mol Microbiol
, vol.49
, pp. 81-92
-
-
Kirn, T.J.1
Bose, N.2
Taylor, R.K.3
-
50
-
-
84927693101
-
Bacteria-phage coevolution as a driver of ecological and evolutionary processes in microbial communities
-
Koskella, B., and Brockhurst, M.A. (2014) Bacteria-phage coevolution as a driver of ecological and evolutionary processes in microbial communities. FEMS Microbiol Rev 38: 916–931.
-
(2014)
FEMS Microbiol Rev
, vol.38
, pp. 916-931
-
-
Koskella, B.1
Brockhurst, M.A.2
-
51
-
-
84908067413
-
Temperature-driven differential gene expression by RNA thermosensors
-
Krajewski, S.S., and Narberhaus, F. (2014) Temperature-driven differential gene expression by RNA thermosensors. Biochim Biophys Acta 1839: 978–988.
-
(2014)
Biochim Biophys Acta
, vol.1839
, pp. 978-988
-
-
Krajewski, S.S.1
Narberhaus, F.2
-
52
-
-
84860742976
-
The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium
-
Kroger, C., Dillon, S.C., Cameron, A.D., Papenfort, K., Sivasankaran, S.K., Hokamp, K., et al. (2012) The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium. Proc Natl Acad Sci U S A 109: E1277–1286.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. E1277-1286
-
-
Kroger, C.1
Dillon, S.C.2
Cameron, A.D.3
Papenfort, K.4
Sivasankaran, S.K.5
Hokamp, K.6
-
53
-
-
84890302568
-
An infection-relevant transcriptomic compendium for Salmonella enterica Serovar Typhimurium
-
Kroger, C., Colgan, A., Srikumar, S., Handler, K., Sivasankaran, S.K., Hammarlof, D.L., et al. (2013) An infection-relevant transcriptomic compendium for Salmonella enterica Serovar Typhimurium. Cell Host Microbe 14: 683–695.
-
(2013)
Cell Host Microbe
, vol.14
, pp. 683-695
-
-
Kroger, C.1
Colgan, A.2
Srikumar, S.3
Handler, K.4
Sivasankaran, S.K.5
Hammarlof, D.L.6
-
54
-
-
84925148541
-
Salmonellae interactions with host processes
-
LaRock, D.L., Chaudhary, A., and Miller, S.I. (2015) Salmonellae interactions with host processes. Nat Rev Microbiol 13: 191–205.
-
(2015)
Nat Rev Microbiol
, vol.13
, pp. 191-205
-
-
LaRock, D.L.1
Chaudhary, A.2
Miller, S.I.3
-
55
-
-
84874773702
-
Role of the Salmonella enterica serovar Typhi Fur regulator and small RNAs RfrA and RfrB in iron homeostasis and interaction with host cells
-
Leclerc, J.M., Dozois, C.M., and Daigle, F. (2013) Role of the Salmonella enterica serovar Typhi Fur regulator and small RNAs RfrA and RfrB in iron homeostasis and interaction with host cells. Microbiology 159: 591–602.
-
(2013)
Microbiology
, vol.159
, pp. 591-602
-
-
Leclerc, J.M.1
Dozois, C.M.2
Daigle, F.3
-
56
-
-
84879824806
-
RaoN, a small RNA encoded within Salmonella pathogenicity island-11, confers resistance to macrophage-induced stress
-
Lee, Y.H., Kim, S., Helmann, J.D., Kim, B.H., and Park, Y.K. (2013) RaoN, a small RNA encoded within Salmonella pathogenicity island-11, confers resistance to macrophage-induced stress. Microbiology 159: 1366–1378.
-
(2013)
Microbiology
, vol.159
, pp. 1366-1378
-
-
Lee, Y.H.1
Kim, S.2
Helmann, J.D.3
Kim, B.H.4
Park, Y.K.5
-
57
-
-
78049423172
-
Turn-over of the small non-coding RNA RprA in E. coli is influenced by osmolarity
-
Madhugiri, R., Basineni, S.R., and Klug, G. (2010) Turn-over of the small non-coding RNA RprA in E. coli is influenced by osmolarity. Mol Genet Genomics 284: 307–318.
-
(2010)
Mol Genet Genomics
, vol.284
, pp. 307-318
-
-
Madhugiri, R.1
Basineni, S.R.2
Klug, G.3
-
58
-
-
25144451503
-
The Rcs phosphorelay: a complex signal transduction system
-
Majdalani, N., and Gottesman, S. (2005) The Rcs phosphorelay: a complex signal transduction system. Annu Rev Microbiol 59: 379–405.
-
(2005)
Annu Rev Microbiol
, vol.59
, pp. 379-405
-
-
Majdalani, N.1
Gottesman, S.2
-
59
-
-
0032514739
-
DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcription
-
Majdalani, N., Cunning, C., Sledjeski, D., Elliott, T., and Gottesman, S. (1998) DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcription. Proc Natl Acad Sci U S A 95: 12462–12467.
-
(1998)
Proc Natl Acad Sci U S A
, vol.95
, pp. 12462-12467
-
-
Majdalani, N.1
Cunning, C.2
Sledjeski, D.3
Elliott, T.4
Gottesman, S.5
-
60
-
-
0036437019
-
Regulation and mode of action of the second small RNA activator of RpoS translation, RprA
-
Majdalani, N., Hernandez, D., and Gottesman, S. (2002) Regulation and mode of action of the second small RNA activator of RpoS translation, RprA. Mol Microbiol 46: 813–826.
-
(2002)
Mol Microbiol
, vol.46
, pp. 813-826
-
-
Majdalani, N.1
Hernandez, D.2
Gottesman, S.3
-
61
-
-
48749115865
-
RNA, but not protein partners, is directly responsible for translational silencing by a bacterial Hfq-binding small RNA
-
Maki, K., Uno, K., Morita, T., and Aiba, H. (2008) RNA, but not protein partners, is directly responsible for translational silencing by a bacterial Hfq-binding small RNA. Proc Natl Acad Sci U S A 105: 10332–10337.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 10332-10337
-
-
Maki, K.1
Uno, K.2
Morita, T.3
Aiba, H.4
-
62
-
-
77951519861
-
A minimal base-pairing region of a bacterial small RNA SgrS required for translational repression of ptsG mRNA
-
Maki, K., Morita, T., Otaka, H., and Aiba, H. (2010) A minimal base-pairing region of a bacterial small RNA SgrS required for translational repression of ptsG mRNA. Mol Microbiol 76: 782–792.
-
(2010)
Mol Microbiol
, vol.76
, pp. 782-792
-
-
Maki, K.1
Morita, T.2
Otaka, H.3
Aiba, H.4
-
63
-
-
84943160849
-
CRISPR-Cas immunity in prokaryotes
-
Marraffini, L.A. (2015) CRISPR-Cas immunity in prokaryotes. Nature 526: 55–61.
-
(2015)
Nature
, vol.526
, pp. 55-61
-
-
Marraffini, L.A.1
-
64
-
-
84923594078
-
Unexpected versatility in bacterial riboswitches
-
Mellin, J.R., and Cossart, P. (2015) Unexpected versatility in bacterial riboswitches. Trends Genet 31: 150–156.
-
(2015)
Trends Genet
, vol.31
, pp. 150-156
-
-
Mellin, J.R.1
Cossart, P.2
-
65
-
-
84964575952
-
Regulation of competence-mediated horizontal gene transfer in the natural habitat of Vibrio cholerae
-
Metzger, L.C., and Blokesch, M. (2015) Regulation of competence-mediated horizontal gene transfer in the natural habitat of Vibrio cholerae. Curr Opin Microbiol 30: 1–7.
-
(2015)
Curr Opin Microbiol
, vol.30
, pp. 1-7
-
-
Metzger, L.C.1
Blokesch, M.2
-
66
-
-
84931570743
-
Cross talk between ABC transporter mRNAs via a target mRNA-derived sponge of the GcvB small RNA
-
Miyakoshi, M., Chao, Y., and Vogel, J. (2015a) Cross talk between ABC transporter mRNAs via a target mRNA-derived sponge of the GcvB small RNA. EMBO J 34: 1478–1492.
-
(2015)
EMBO J
, vol.34
, pp. 1478-1492
-
-
Miyakoshi, M.1
Chao, Y.2
Vogel, J.3
-
67
-
-
84922444526
-
Regulatory small RNAs from the 3' regions of bacterial mRNAs
-
Miyakoshi, M., Chao, Y., and Vogel, J. (2015b) Regulatory small RNAs from the 3' regions of bacterial mRNAs. Curr Opin Microbiol 24: 132–139.
-
(2015)
Curr Opin Microbiol
, vol.24
, pp. 132-139
-
-
Miyakoshi, M.1
Chao, Y.2
Vogel, J.3
-
68
-
-
0029113833
-
Activation of alpha-toxin translation in Staphylococcus aureus by the trans-encoded antisense RNA, RNAIII
-
Morfeldt, E., Taylor, D., von Gabain, A., and Arvidson, S. (1995) Activation of alpha-toxin translation in Staphylococcus aureus by the trans-encoded antisense RNA, RNAIII. EMBO J 14: 4569–4577.
-
(1995)
EMBO J
, vol.14
, pp. 4569-4577
-
-
Morfeldt, E.1
Taylor, D.2
von Gabain, A.3
Arvidson, S.4
-
69
-
-
84860757645
-
Dynamics of Salmonella small RNA expression in non-growing bacteria located inside eukaryotic cells
-
Ortega, A.D., Gonzalo-Asensio, J., and Garcia-del Portillo, F. (2012) Dynamics of Salmonella small RNA expression in non-growing bacteria located inside eukaryotic cells. RNA Biol 9: 469–488.
-
(2012)
RNA Biol
, vol.9
, pp. 469-488
-
-
Ortega, A.D.1
Gonzalo-Asensio, J.2
Garcia-del Portillo, F.3
-
70
-
-
80051973174
-
PolyU tail of rho-independent terminator of bacterial small RNAs is essential for Hfq action
-
Otaka, H., Ishikawa, H., Morita, T., and Aiba, H. (2011) PolyU tail of rho-independent terminator of bacterial small RNAs is essential for Hfq action. Proc Natl Acad Sci U S A 108: 13059–13064.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 13059-13064
-
-
Otaka, H.1
Ishikawa, H.2
Morita, T.3
Aiba, H.4
-
71
-
-
41849139346
-
Small RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulence
-
Padalon-Brauch, G., Hershberg, R., Elgrably-Weiss, M., Baruch, K., Rosenshine, I., Margalit, H., and Altuvia, S. (2008) Small RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulence. Nucleic Acids Res 36: 1913–1927.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 1913-1927
-
-
Padalon-Brauch, G.1
Hershberg, R.2
Elgrably-Weiss, M.3
Baruch, K.4
Rosenshine, I.5
Margalit, H.6
Altuvia, S.7
-
72
-
-
84939502874
-
Target activation by regulatory RNAs in bacteria
-
Papenfort, K., and Vanderpool, C.K. (2015) Target activation by regulatory RNAs in bacteria. FEMS Microbiol Rev 39: 362–378.
-
(2015)
FEMS Microbiol Rev
, vol.39
, pp. 362-378
-
-
Papenfort, K.1
Vanderpool, C.K.2
-
73
-
-
77958028354
-
Regulatory RNA in bacterial pathogens
-
Papenfort, K., and Vogel, J. (2010) Regulatory RNA in bacterial pathogens. Cell Host Microbe 8: 116–127.
-
(2010)
Cell Host Microbe
, vol.8
, pp. 116-127
-
-
Papenfort, K.1
Vogel, J.2
-
74
-
-
84915760848
-
Small RNA functions in carbon metabolism and virulence of enteric pathogens
-
Papenfort, K., and Vogel, J. (2014) Small RNA functions in carbon metabolism and virulence of enteric pathogens. Front Cell Infect Microbiol 4: 91.
-
(2014)
Front Cell Infect Microbiol
, vol.4
, pp. 91
-
-
Papenfort, K.1
Vogel, J.2
-
75
-
-
33751383274
-
SigmaE-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay
-
Papenfort, K., Pfeiffer, V., Mika, F., Lucchini, S., Hinton, J.C., and Vogel, J. (2006) SigmaE-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay. Mol Microbiol 62: 1674–1688.
-
(2006)
Mol Microbiol
, vol.62
, pp. 1674-1688
-
-
Papenfort, K.1
Pfeiffer, V.2
Mika, F.3
Lucchini, S.4
Hinton, J.C.5
Vogel, J.6
-
76
-
-
70350176597
-
Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA
-
Papenfort, K., Said, N., Welsink, T., Lucchini, S., Hinton, J.C., and Vogel, J. (2009) Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA. Mol Microbiol 74: 139–158.
-
(2009)
Mol Microbiol
, vol.74
, pp. 139-158
-
-
Papenfort, K.1
Said, N.2
Welsink, T.3
Lucchini, S.4
Hinton, J.C.5
Vogel, J.6
-
77
-
-
78650532236
-
Evidence for an autonomous 5' target recognition domain in an Hfq-associated small RNA
-
Papenfort, K., Bouvier, M., Mika, F., Sharma, C.M., and Vogel, J. (2010) Evidence for an autonomous 5' target recognition domain in an Hfq-associated small RNA. Proc Natl Acad Sci U S A 107: 20435–20440.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 20435-20440
-
-
Papenfort, K.1
Bouvier, M.2
Mika, F.3
Sharma, C.M.4
Vogel, J.5
-
78
-
-
84859451156
-
The ancestral SgrS RNA discriminates horizontally acquired Salmonella mRNAs through a single G-U wobble pair
-
Papenfort, K., Podkaminski, D., Hinton, J.C., and Vogel, J. (2012) The ancestral SgrS RNA discriminates horizontally acquired Salmonella mRNAs through a single G-U wobble pair. Proc Natl Acad Sci U S A 109: E757–764.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. E757-764
-
-
Papenfort, K.1
Podkaminski, D.2
Hinton, J.C.3
Vogel, J.4
-
79
-
-
84876234571
-
Small RNA-mediated activation of sugar phosphatase mRNA regulates glucose homeostasis
-
Papenfort, K., Sun, Y., Miyakoshi, M., Vanderpool, C.K., and Vogel, J. (2013) Small RNA-mediated activation of sugar phosphatase mRNA regulates glucose homeostasis. Cell 153: 426–437.
-
(2013)
Cell
, vol.153
, pp. 426-437
-
-
Papenfort, K.1
Sun, Y.2
Miyakoshi, M.3
Vanderpool, C.K.4
Vogel, J.5
-
80
-
-
84940404135
-
Small RNA-based feedforward loop with AND-gate logic regulates extrachromosomal DNA transfer in Salmonella
-
Papenfort, K., Espinosa, E., Casadesus, J., and Vogel, J. (2015a) Small RNA-based feedforward loop with AND-gate logic regulates extrachromosomal DNA transfer in Salmonella. Proc Natl Acad Sci U S A 112: E4772–4781.
-
(2015)
Proc Natl Acad Sci U S A
, vol.112
, pp. E4772-4781
-
-
Papenfort, K.1
Espinosa, E.2
Casadesus, J.3
Vogel, J.4
-
81
-
-
84922440514
-
Differential RNA-seq of Vibrio cholerae identifies the VqmR small RNA as a regulator of biofilm formation
-
Papenfort, K., Forstner, K.U., Cong, J.P., Sharma, C.M., and Bassler, B.L. (2015b) Differential RNA-seq of Vibrio cholerae identifies the VqmR small RNA as a regulator of biofilm formation. Proc Natl Acad Sci U S A 112: E766–775.
-
(2015)
Proc Natl Acad Sci U S A
, vol.112
, pp. E766-775
-
-
Papenfort, K.1
Forstner, K.U.2
Cong, J.P.3
Sharma, C.M.4
Bassler, B.L.5
-
82
-
-
84920200267
-
Bacteriophage-mediated spread of bacterial virulence genes
-
Penades, J.R., Chen, J., Quiles-Puchalt, N., Carpena, N., and Novick, R.P. (2015) Bacteriophage-mediated spread of bacterial virulence genes. Curr Opin Microbiol 23: 171–178.
-
(2015)
Curr Opin Microbiol
, vol.23
, pp. 171-178
-
-
Penades, J.R.1
Chen, J.2
Quiles-Puchalt, N.3
Carpena, N.4
Novick, R.P.5
-
83
-
-
36148969305
-
A small non-coding RNA of the invasion gene island (SPI-1) represses outer membrane protein synthesis from the Salmonella core genome
-
Pfeiffer, V., Sittka, A., Tomer, R., Tedin, K., Brinkmann, V., and Vogel, J. (2007) A small non-coding RNA of the invasion gene island (SPI-1) represses outer membrane protein synthesis from the Salmonella core genome. Mol Microbiol 66: 1174–1191.
-
(2007)
Mol Microbiol
, vol.66
, pp. 1174-1191
-
-
Pfeiffer, V.1
Sittka, A.2
Tomer, R.3
Tedin, K.4
Brinkmann, V.5
Vogel, J.6
-
84
-
-
68249156618
-
Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation
-
Pfeiffer, V., Papenfort, K., Lucchini, S., Hinton, J.C., and Vogel, J. (2009) Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation. Nat Struct Mol Biol 16: 840–846.
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 840-846
-
-
Pfeiffer, V.1
Papenfort, K.2
Lucchini, S.3
Hinton, J.C.4
Vogel, J.5
-
85
-
-
84860211390
-
An in silico model for identification of small RNAs in whole bacterial genomes: characterization of antisense RNAs in pathogenic Escherichia coli and Streptococcus agalactiae strains
-
Pichon, C., du Merle, L., Caliot, M.E., Trieu-Cuot, P., and Le Bouguenec, C. (2012) An in silico model for identification of small RNAs in whole bacterial genomes: characterization of antisense RNAs in pathogenic Escherichia coli and Streptococcus agalactiae strains. Nucleic Acids Res 40: 2846–2861.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 2846-2861
-
-
Pichon, C.1
du Merle, L.2
Caliot, M.E.3
Trieu-Cuot, P.4
Le Bouguenec, C.5
-
86
-
-
84878608047
-
The AfaR small RNA controls expression of the AfaD-VIII invasin in pathogenic Escherichia coli strains
-
Pichon, C., du Merle, L., Lequeutre, I., and Le Bouguenec, C. (2013) The AfaR small RNA controls expression of the AfaD-VIII invasin in pathogenic Escherichia coli strains. Nucleic Acids Res 41: 5469–5482.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 5469-5482
-
-
Pichon, C.1
du Merle, L.2
Lequeutre, I.3
Le Bouguenec, C.4
-
87
-
-
84867056798
-
Small RNA binding-site multiplicity involved in translational regulation of a polycistronic mRNA
-
Rice, J.B., Balasubramanian, D., and Vanderpool, C.K. (2012) Small RNA binding-site multiplicity involved in translational regulation of a polycistronic mRNA. Proc Natl Acad Sci U S A 109: E2691–2698.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. E2691-2698
-
-
Rice, J.B.1
Balasubramanian, D.2
Vanderpool, C.K.3
-
88
-
-
78649586895
-
The Vibrio cholerae virulence regulatory cascade controls glucose uptake through activation of TarA, a small regulatory RNA
-
Richard, A.L., Withey, J.H., Beyhan, S., Yildiz, F., and DiRita, V.J. (2010) The Vibrio cholerae virulence regulatory cascade controls glucose uptake through activation of TarA, a small regulatory RNA. Mol Microbiol 78: 1171–1181.
-
(2010)
Mol Microbiol
, vol.78
, pp. 1171-1181
-
-
Richard, A.L.1
Withey, J.H.2
Beyhan, S.3
Yildiz, F.4
DiRita, V.J.5
-
89
-
-
0033186120
-
The virulence plasmids of Salmonella
-
Rotger, R., and Casadesus, J. (1999) The virulence plasmids of Salmonella. Int Microbiol 2: 177–184.
-
(1999)
Int Microbiol
, vol.2
, pp. 177-184
-
-
Rotger, R.1
Casadesus, J.2
-
90
-
-
77749314807
-
So similar, yet so different: uncovering distinctive features in the genomes of Salmonella enterica serovars Typhimurium and Typhi
-
Sabbagh, S.C., Forest, C.G., Lepage, C., Leclerc, J.M., and Daigle, F. (2010) So similar, yet so different: uncovering distinctive features in the genomes of Salmonella enterica serovars Typhimurium and Typhi. FEMS Microbiol Lett 305: 1–13.
-
(2010)
FEMS Microbiol Lett
, vol.305
, pp. 1-13
-
-
Sabbagh, S.C.1
Forest, C.G.2
Lepage, C.3
Leclerc, J.M.4
Daigle, F.5
-
91
-
-
84861442326
-
Regulating iron storage and metabolism with RNA: an overview of posttranscriptional controls of intracellular iron homeostasis
-
Salvail, H., and Masse, E. (2012) Regulating iron storage and metabolism with RNA: an overview of posttranscriptional controls of intracellular iron homeostasis. Wiley Interdiscip Rev RNA 3: 26–36.
-
(2012)
Wiley Interdiscip Rev RNA
, vol.3
, pp. 26-36
-
-
Salvail, H.1
Masse, E.2
-
92
-
-
80051962605
-
Structural basis for RNA 3'-end recognition by Hfq
-
Sauer, E., and Weichenrieder, O. (2011) Structural basis for RNA 3'-end recognition by Hfq. Proc Natl Acad Sci U S A 108: 13065–13070.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 13065-13070
-
-
Sauer, E.1
Weichenrieder, O.2
-
93
-
-
0016611081
-
Temperate Bacteriophage which causes the production of a new major outer membrane protein by Escherichia coli
-
Schnaitman, C., Smith, D., and de Salsas, M.F. (1975) Temperate Bacteriophage which causes the production of a new major outer membrane protein by Escherichia coli. J Virol 15: 1121–1130.
-
(1975)
J Virol
, vol.15
, pp. 1121-1130
-
-
Schnaitman, C.1
Smith, D.2
de Salsas, M.F.3
-
94
-
-
84901638934
-
Quorum regulatory small RNAs repress type VI secretion in Vibrio cholerae
-
Shao, Y., and Bassler, B.L. (2014) Quorum regulatory small RNAs repress type VI secretion in Vibrio cholerae. Mol Microbiol 92: 921–930.
-
(2014)
Mol Microbiol
, vol.92
, pp. 921-930
-
-
Shao, Y.1
Bassler, B.L.2
-
95
-
-
35948970194
-
A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites
-
Sharma, C.M., Darfeuille, F., Plantinga, T.H., and Vogel, J. (2007) A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites. Genes Dev 21: 2804–2817.
-
(2007)
Genes Dev
, vol.21
, pp. 2804-2817
-
-
Sharma, C.M.1
Darfeuille, F.2
Plantinga, T.H.3
Vogel, J.4
-
96
-
-
80051929071
-
Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA
-
Sharma, C.M., Papenfort, K., Pernitzsch, S.R., Mollenkopf, H.J., Hinton, J.C., and Vogel, J. (2011) Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA. Mol Microbiol 81: 1144–1165.
-
(2011)
Mol Microbiol
, vol.81
, pp. 1144-1165
-
-
Sharma, C.M.1
Papenfort, K.2
Pernitzsch, S.R.3
Mollenkopf, H.J.4
Hinton, J.C.5
Vogel, J.6
-
97
-
-
72849114230
-
Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity
-
Sorek, R., and Cossart, P. (2010) Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity. Nat Rev Genet 11: 9–16.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 9-16
-
-
Sorek, R.1
Cossart, P.2
-
98
-
-
84948990820
-
RNA-seq brings new insights to the intra-macrophage transcriptome of Salmonella Typhimurium
-
Srikumar, S., Kroger, C., Hebrard, M., Colgan, A., Owen, S.V., Sivasankaran, S.K., et al., (2015) RNA-seq brings new insights to the intra-macrophage transcriptome of Salmonella Typhimurium. PLoS Pathog 11: e1005262.
-
(2015)
PLoS Pathog
, vol.11
-
-
Srikumar, S.1
Kroger, C.2
Hebrard, M.3
Colgan, A.4
Owen, S.V.5
Sivasankaran, S.K.6
-
99
-
-
84896480985
-
A novel small regulatory RNA enhances cell motility in enterohemorrhagic Escherichia coli
-
Sudo, N., Soma, A., Muto, A., Iyoda, S., Suh, M., Kurihara, N., et al. (2014) A novel small regulatory RNA enhances cell motility in enterohemorrhagic Escherichia coli. J Gen Appl Microbiol 60: 44–50.
-
(2014)
J Gen Appl Microbiol
, vol.60
, pp. 44-50
-
-
Sudo, N.1
Soma, A.2
Muto, A.3
Iyoda, S.4
Suh, M.5
Kurihara, N.6
-
100
-
-
0036714801
-
Predicted structure and phyletic distribution of the RNA-binding protein Hfq
-
Sun, X., Zhulin, I., and Wartell, R.M. (2002) Predicted structure and phyletic distribution of the RNA-binding protein Hfq. Nucleic Acids Res 30: 3662–3671.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 3662-3671
-
-
Sun, X.1
Zhulin, I.2
Wartell, R.M.3
-
101
-
-
0026579213
-
Regulation of the expression of the cell-cycle gene ftsZ by DicF antisense RNA. Division does not require a fixed number of FtsZ molecules
-
Tetart, F., and Bouche, J.P. (1992) Regulation of the expression of the cell-cycle gene ftsZ by DicF antisense RNA. Division does not require a fixed number of FtsZ molecules. Mol Microbiol 6: 615–620.
-
(1992)
Mol Microbiol
, vol.6
, pp. 615-620
-
-
Tetart, F.1
Bouche, J.P.2
-
102
-
-
84904467798
-
Identification of bacteriophage-encoded anti-sRNAs in pathogenic Escherichia coli
-
Tree, J.J., Granneman, S., McAteer, S.P., Tollervey, D., and Gally, D.L. (2014) Identification of bacteriophage-encoded anti-sRNAs in pathogenic Escherichia coli. Mol Cell 55: 199–213.
-
(2014)
Mol Cell
, vol.55
, pp. 199-213
-
-
Tree, J.J.1
Granneman, S.2
McAteer, S.P.3
Tollervey, D.4
Gally, D.L.5
-
103
-
-
8544271637
-
Involvement of a novel transcriptional activator and small RNA in post-transcriptional regulation of the glucose phosphoenolpyruvate phosphotransferase system
-
Vanderpool, C.K., and Gottesman, S. (2004) Involvement of a novel transcriptional activator and small RNA in post-transcriptional regulation of the glucose phosphoenolpyruvate phosphotransferase system. Mol Microbiol 54: 1076–1089.
-
(2004)
Mol Microbiol
, vol.54
, pp. 1076-1089
-
-
Vanderpool, C.K.1
Gottesman, S.2
-
104
-
-
84946073992
-
Transcriptomic analysis of Shiga-toxigenic bacteriophage carriage reveals a profound regulatory effect on acid resistance in Escherichia coli
-
Veses-Garcia, M., Liu, X., Rigden, D.J., Kenny, J.G., McCarthy, A.J., and Allison, H.E. (2015) Transcriptomic analysis of Shiga-toxigenic bacteriophage carriage reveals a profound regulatory effect on acid resistance in Escherichia coli. Appl Environ Microbiol 81: 8118–8125.
-
(2015)
Appl Environ Microbiol
, vol.81
, pp. 8118-8125
-
-
Veses-Garcia, M.1
Liu, X.2
Rigden, D.J.3
Kenny, J.G.4
McCarthy, A.J.5
Allison, H.E.6
-
105
-
-
79960433506
-
Hfq and its constellation of RNA
-
Vogel, J., and B.F. Luisi, (2011) Hfq and its constellation of RNA. Nat Rev Microbiol 9: 578–589.
-
(2011)
Nat Rev Microbiol
, vol.9
, pp. 578-589
-
-
Vogel, J.1
Luisi, B.F.2
-
106
-
-
84969794511
-
Hfqs in Bacillus anthracis: role of protein sequence variation in the structure and function of proteins in the Hfq family
-
Vrentas, C., Ghirlando, R., Keefer, A., Hu, Z., Tomczak, A., Gittis, A.G., et al. (2015) Hfqs in Bacillus anthracis: role of protein sequence variation in the structure and function of proteins in the Hfq family. Protein Sci 24: 1808–1819.
-
(2015)
Protein Sci
, vol.24
, pp. 1808-1819
-
-
Vrentas, C.1
Ghirlando, R.2
Keefer, A.3
Hu, Z.4
Tomczak, A.5
Gittis, A.G.6
-
107
-
-
38049115217
-
A dual function for a bacterial small RNA: SgrS performs base pairing-dependent regulation and encodes a functional polypeptide
-
Wadler, C.S., and Vanderpool, C.K. (2007) A dual function for a bacterial small RNA: SgrS performs base pairing-dependent regulation and encodes a functional polypeptide. Proc Natl Acad Sci U S A 104: 20454–20459.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 20454-20459
-
-
Wadler, C.S.1
Vanderpool, C.K.2
-
108
-
-
84879014020
-
Cycling of RNAs on Hfq
-
Wagner, E.G. (2013) Cycling of RNAs on Hfq. RNA Biol 10: 619–626.
-
(2013)
RNA Biol
, vol.10
, pp. 619-626
-
-
Wagner, E.G.1
-
109
-
-
0033012192
-
Small RNAs in Escherichia coli
-
Wassarman, K.M., Zhang, A., and Storz, G. (1999) Small RNAs in Escherichia coli. Trends Microbiol 7: 37–45.
-
(1999)
Trends Microbiol
, vol.7
, pp. 37-45
-
-
Wassarman, K.M.1
Zhang, A.2
Storz, G.3
-
110
-
-
84964262313
-
Dual RNA-seq unveils noncoding RNA functions in host-pathogen interactions
-
Westermann, A.J., Forstner, K.U., Amman, F., Barquist, L., Chao, Y., Schulte, L.N., et al., (2016) Dual RNA-seq unveils noncoding RNA functions in host-pathogen interactions. Nature 529: 496–501.
-
(2016)
Nature
, vol.529
, pp. 496-501
-
-
Westermann, A.J.1
Forstner, K.U.2
Amman, F.3
Barquist, L.4
Chao, Y.5
Schulte, L.N.6
-
111
-
-
77956932251
-
The amazing world of bacterial structured RNAs
-
Westhof, E. (2010) The amazing world of bacterial structured RNAs. Genome Biol 11: 108.
-
(2010)
Genome Biol
, vol.11
, pp. 108
-
-
Westhof, E.1
-
112
-
-
84910091088
-
Integrated circuits: how transcriptional silencing and counter-silencing facilitate bacterial evolution
-
Will, W.R., Navarre, W.W., and Fang, F.C. (2015) Integrated circuits: how transcriptional silencing and counter-silencing facilitate bacterial evolution. Curr Opin Microbiol 23: 8–13.
-
(2015)
Curr Opin Microbiol
, vol.23
, pp. 8-13
-
-
Will, W.R.1
Navarre, W.W.2
Fang, F.C.3
-
113
-
-
59649095559
-
Coordinated regulation of virulence during systemic infection of Salmonella enterica serovar Typhimurium
-
Yoon, H., McDermott, J.E., Porwollik, S., McClelland, M., and Heffron, F. (2009) Coordinated regulation of virulence during systemic infection of Salmonella enterica serovar Typhimurium. PLoS Pathog 5: e1000306.
-
(2009)
PLoS Pathog
, vol.5
-
-
Yoon, H.1
McDermott, J.E.2
Porwollik, S.3
McClelland, M.4
Heffron, F.5
-
114
-
-
78650485610
-
Quorum sensing and a global regulator TsrA control expression of type VI secretion and virulence in Vibrio cholerae
-
Zheng, J., Shin, O.S., Cameron, D.E., and Mekalanos, J.J. (2010) Quorum sensing and a global regulator TsrA control expression of type VI secretion and virulence in Vibrio cholerae. Proc Natl Acad Sci U S A 107: 21128–21133.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 21128-21133
-
-
Zheng, J.1
Shin, O.S.2
Cameron, D.E.3
Mekalanos, J.J.4
-
115
-
-
16844368281
-
MinC mutants deficient in MinD- and DicB-mediated cell division inhibition due to loss of interaction with MinD, DicB, or a septal component
-
Zhou, H., and Lutkenhaus, J. (2005) MinC mutants deficient in MinD- and DicB-mediated cell division inhibition due to loss of interaction with MinD, DicB, or a septal component. J Bacteriol 187: 2846–2857.
-
(2005)
J Bacteriol
, vol.187
, pp. 2846-2857
-
-
Zhou, H.1
Lutkenhaus, J.2
|