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Volumn 101, Issue 5, 2016, Pages 701-713

Interplay of regulatory RNAs and mobile genetic elements in enteric pathogens

Author keywords

[No Author keywords available]

Indexed keywords

CRISPR ASSOCIATED PROTEIN; SMALL INTERFERING RNA;

EID: 84983670630     PISSN: 0950382X     EISSN: 13652958     Source Type: Journal    
DOI: 10.1111/mmi.13428     Document Type: Review
Times cited : (23)

References (115)
  • 1
    • 34250725542 scopus 로고    scopus 로고
    • Identification of bacterial small non-coding RNAs: experimental approaches
    • Altuvia, S. (2007) Identification of bacterial small non-coding RNAs: experimental approaches. Curr Opin Microbiol 10: 257–261.
    • (2007) Curr Opin Microbiol , vol.10 , pp. 257-261
    • Altuvia, S.1
  • 3
    • 84948763782 scopus 로고    scopus 로고
    • Accelerating Discovery and Functional Analysis of Small RNAs with New Technologies
    • Barquist, L., and J. Vogel, (2015) Accelerating Discovery and Functional Analysis of Small RNAs with New Technologies. Annu Rev Genet 49: 367–394.
    • (2015) Annu Rev Genet , vol.49 , pp. 367-394
    • Barquist, L.1    Vogel, J.2
  • 4
    • 80053226878 scopus 로고    scopus 로고
    • The RpoS-mediated general stress response in Escherichia coli
    • Battesti, A., N. Majdalani, and S. Gottesman, (2011) The RpoS-mediated general stress response in Escherichia coli. Annu Rev Microbiol 65: 189–213.
    • (2011) Annu Rev Microbiol , vol.65 , pp. 189-213
    • Battesti, A.1    Majdalani, N.2    Gottesman, S.3
  • 5
    • 0037371179 scopus 로고    scopus 로고
    • HilE interacts with HilD and negatively regulates hilA transcription and expression of the Salmonella enterica serovar Typhimurium invasive phenotype
    • Baxter, M.A., T.F. Fahlen, R.L. Wilson, and B.D. Jones, (2003) HilE interacts with HilD and negatively regulates hilA transcription and expression of the Salmonella enterica serovar Typhimurium invasive phenotype. Infect Immun 71: 1295–1305.
    • (2003) Infect Immun , vol.71 , pp. 1295-1305
    • Baxter, M.A.1    Fahlen, T.F.2    Wilson, R.L.3    Jones, B.D.4
  • 6
    • 0023924209 scopus 로고
    • Cell division inhibition gene dicB is regulated by a locus similar to lambdoid bacteriophage immunity loci
    • Bejar, S., F. Bouche, and J.P. Bouche, (1988) Cell division inhibition gene dicB is regulated by a locus similar to lambdoid bacteriophage immunity loci. Mol Gen Genet 212: 11–19.
    • (1988) Mol Gen Genet , vol.212 , pp. 11-19
    • Bejar, S.1    Bouche, F.2    Bouche, J.P.3
  • 7
    • 0036077023 scopus 로고    scopus 로고
    • Identification of an aggregative adhesion fimbria (AAF) type III-encoding operon in enteroaggregative Escherichia coli as a sensitive probe for detecting the AAF-encoding operon family
    • Bernier, C., P. Gounon, and C. Le Bouguenec, (2002) Identification of an aggregative adhesion fimbria (AAF) type III-encoding operon in enteroaggregative Escherichia coli as a sensitive probe for detecting the AAF-encoding operon family. Infect Immun 70: 4302–4311.
    • (2002) Infect Immun , vol.70 , pp. 4302-4311
    • Bernier, C.1    Gounon, P.2    Le Bouguenec, C.3
  • 8
    • 0024365785 scopus 로고
    • Genetic evidence that DicF, a second division inhibitor encoded by the Escherichia coli dicB operon, is probably RNA
    • Bouche, F., and Bouche, J.P. (1989) Genetic evidence that DicF, a second division inhibitor encoded by the Escherichia coli dicB operon, is probably RNA. Mol Microbiol 3: 991–994.
    • (1989) Mol Microbiol , vol.3 , pp. 991-994
    • Bouche, F.1    Bouche, J.P.2
  • 9
    • 57149111586 scopus 로고    scopus 로고
    • Small RNA binding to 5' mRNA coding region inhibits translational initiation
    • Bouvier, M., Sharma, C.M., Mika, F. Nierhaus, K.H. and Vogel, J. (2008) Small RNA binding to 5' mRNA coding region inhibits translational initiation. Mol Cell 32: 827–837.
    • (2008) Mol Cell , vol.32 , pp. 827-837
    • Bouvier, M.1    Sharma, C.M.2    Mika, F.3    Nierhaus, K.H.4    Vogel, J.5
  • 10
    • 79960967875 scopus 로고    scopus 로고
    • A genome-wide approach to discovery of small RNAs involved in regulation of virulence in Vibrio cholerae
    • Bradley, E.S., Bodi, K., Ismail, A.M., and Camilli, A. (2011) A genome-wide approach to discovery of small RNAs involved in regulation of virulence in Vibrio cholerae. PLoS Pathog 7: e1002126.
    • (2011) PLoS Pathog , vol.7
    • Bradley, E.S.1    Bodi, K.2    Ismail, A.M.3    Camilli, A.4
  • 11
    • 84940111502 scopus 로고    scopus 로고
    • Plasmid Replication Control by Antisense RNAs
    • PLAS–0001−2013
    • Brantl, S. (2014) Plasmid Replication Control by Antisense RNAs. Microbiol Spectr 2: PLAS–0001−2013.
    • (2014) Microbiol Spectr , vol.2
    • Brantl, S.1
  • 12
    • 4544321685 scopus 로고    scopus 로고
    • Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion
    • table of contents
    • Brussow, H., Canchaya, C., and Hardt, W.D. (2004) Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion. Microbiol Mol Biol Rev 68: 560–602, table of contents.
    • (2004) Microbiol Mol Biol Rev , vol.68 , pp. 560-602
    • Brussow, H.1    Canchaya, C.2    Hardt, W.D.3
  • 14
    • 84893801940 scopus 로고    scopus 로고
    • Role of Salmonella Typhimurium small RNAs RyhB-1 and RyhB-2 in the oxidative stress response
    • Calderon, I.L., Morales, E.H., Collao, B., Calderon, P.F., Chahuan, C.A., Acuna, L.G., et al. (2014a) Role of Salmonella Typhimurium small RNAs RyhB-1 and RyhB-2 in the oxidative stress response. Res Microbiol 165: 30–40.
    • (2014) Res Microbiol , vol.165 , pp. 30-40
    • Calderon, I.L.1    Morales, E.H.2    Collao, B.3    Calderon, P.F.4    Chahuan, C.A.5    Acuna, L.G.6
  • 15
    • 84904721020 scopus 로고    scopus 로고
    • The small RNA RyhB homologs from Salmonella typhimurium participate in the response to S-nitrosoglutathione-induced stress
    • Calderon, P.F., Morales, E.H., Acuna, L.G., Fuentes, D.N., Gil, F., Porwollik, S., et al. (2014b) The small RNA RyhB homologs from Salmonella typhimurium participate in the response to S-nitrosoglutathione-induced stress. Biochem Biophys Res Commun 450: 641–645.
    • (2014) Biochem Biophys Res Commun , vol.450 , pp. 641-645
    • Calderon, P.F.1    Morales, E.H.2    Acuna, L.G.3    Fuentes, D.N.4    Gil, F.5    Porwollik, S.6
  • 16
    • 48649107476 scopus 로고    scopus 로고
    • The type VI secretion toolkit
    • Cascales, E. (2008) The type VI secretion toolkit. EMBO Rep 9: 735–741.
    • (2008) EMBO Rep , vol.9 , pp. 735-741
    • Cascales, E.1
  • 17
    • 30744444985 scopus 로고    scopus 로고
    • Novel mechanism of Escherichia coli porin regulation
    • Castillo-Keller, M., Vuong, P., and Misra, R. (2006) Novel mechanism of Escherichia coli porin regulation. J Bacteriol 188: 576–586.
    • (2006) J Bacteriol , vol.188 , pp. 576-586
    • Castillo-Keller, M.1    Vuong, P.2    Misra, R.3
  • 18
    • 84907029678 scopus 로고    scopus 로고
    • 6S RNA, a global regulator of transcription in Escherichia coli, Bacillus subtilis, and beyond
    • Cavanagh, A.T., and Wassarman, K.M. (2014) 6S RNA, a global regulator of transcription in Escherichia coli, Bacillus subtilis, and beyond. Annu Rev Microbiol 68: 45–60.
    • (2014) Annu Rev Microbiol , vol.68 , pp. 45-60
    • Cavanagh, A.T.1    Wassarman, K.M.2
  • 19
    • 84957427381 scopus 로고    scopus 로고
    • A 3' UTR-derived small RNA provides the regulatory noncoding arm of the inner membrane stress response
    • Chao, Y., and Vogel, J. (2016) A 3' UTR-derived small RNA provides the regulatory noncoding arm of the inner membrane stress response. Mol Cell 61: 352–363.
    • (2016) Mol Cell , vol.61 , pp. 352-363
    • Chao, Y.1    Vogel, J.2
  • 20
    • 84867577054 scopus 로고    scopus 로고
    • An atlas of Hfq-bound transcripts reveals 3' UTRs as a genomic reservoir of regulatory small RNAs
    • Chao, Y., Papenfort, K., Reinhardt, R., Sharma, C.M., and Vogel, J. (2012) An atlas of Hfq-bound transcripts reveals 3' UTRs as a genomic reservoir of regulatory small RNAs. EMBO J 31: 4005–4019.
    • (2012) EMBO J , vol.31 , pp. 4005-4019
    • Chao, Y.1    Papenfort, K.2    Reinhardt, R.3    Sharma, C.M.4    Vogel, J.5
  • 21
    • 84876848287 scopus 로고    scopus 로고
    • Comprehensive assignment of roles for Salmonella typhimurium genes in intestinal colonization of food-producing animals
    • Chaudhuri, R.R., Morgan, E., Peters, S.E., Pleasance, S.J., Hudson, D.L., Davies, H.M., et al. (2013) Comprehensive assignment of roles for Salmonella typhimurium genes in intestinal colonization of food-producing animals. PLoS Genet 9: e1003456.
    • (2013) PLoS Genet , vol.9
    • Chaudhuri, R.R.1    Morgan, E.2    Peters, S.E.3    Pleasance, S.J.4    Hudson, D.L.5    Davies, H.M.6
  • 22
    • 77957802374 scopus 로고    scopus 로고
    • Studying bacterial transcriptomes using RNA-seq
    • Croucher, N.J., and Thomson, N.R. (2010) Studying bacterial transcriptomes using RNA-seq. Curr Opin Microbiol 13: 619–624.
    • (2010) Curr Opin Microbiol , vol.13 , pp. 619-624
    • Croucher, N.J.1    Thomson, N.R.2
  • 23
    • 34247567492 scopus 로고    scopus 로고
    • An antisense RNA inhibits translation by competing with standby ribosomes
    • Darfeuille, F., Unoson, C., Vogel, J., and Wagner, E.G. (2007) An antisense RNA inhibits translation by competing with standby ribosomes. Mol Cell 26: 381–392.
    • (2007) Mol Cell , vol.26 , pp. 381-392
    • Darfeuille, F.1    Unoson, C.2    Vogel, J.3    Wagner, E.G.4
  • 24
    • 84875457350 scopus 로고    scopus 로고
    • Bacterial small RNA-based negative regulation: Hfq and its accomplices
    • De Lay, N., Schu, D.J., and Gottesman, S. (2013) Bacterial small RNA-based negative regulation: Hfq and its accomplices. J Biol Chem 288: 7996–8003.
    • (2013) J Biol Chem , vol.288 , pp. 7996-8003
    • De Lay, N.1    Schu, D.J.2    Gottesman, S.3
  • 25
    • 84859365433 scopus 로고    scopus 로고
    • Noncanonical repression of translation initiation through small RNA recruitment of the RNA chaperone Hfq
    • Desnoyers, G., and Masse, E. (2012) Noncanonical repression of translation initiation through small RNA recruitment of the RNA chaperone Hfq. Genes Dev 26: 726–739.
    • (2012) Genes Dev , vol.26 , pp. 726-739
    • Desnoyers, G.1    Masse, E.2
  • 26
    • 2442449227 scopus 로고    scopus 로고
    • Genomic islands in pathogenic and environmental microorganisms
    • Dobrindt, U., Hochhut, B., Hentschel, U., and Hacker, J. (2004) Genomic islands in pathogenic and environmental microorganisms. Nat Rev Microbiol 2: 414–424.
    • (2004) Nat Rev Microbiol , vol.2 , pp. 414-424
    • Dobrindt, U.1    Hochhut, B.2    Hentschel, U.3    Hacker, J.4
  • 27
  • 28
    • 63849316449 scopus 로고    scopus 로고
    • Regulatory integration of horizontally-transferred genes in bacteria
    • Dorman, C.J. (2009) Regulatory integration of horizontally-transferred genes in bacteria. Front Biosci (Landmark Ed) 14: 4103–4112.
    • (2009) Front Biosci (Landmark Ed) , vol.14 , pp. 4103-4112
    • Dorman, C.J.1
  • 29
    • 77349104885 scopus 로고    scopus 로고
    • Reprogramming of anaerobic metabolism by the FnrS small RNA
    • Durand, S., and Storz, G. (2010) Reprogramming of anaerobic metabolism by the FnrS small RNA. Mol Microbiol 75: 1215–1231.
    • (2010) Mol Microbiol , vol.75 , pp. 1215-1231
    • Durand, S.1    Storz, G.2
  • 30
    • 38749084963 scopus 로고    scopus 로고
    • Fur regulates expression of the Salmonella pathogenicity island 1 type III secretion system through HilD
    • Ellermeier, J.R., and Slauch, J.M. (2008) Fur regulates expression of the Salmonella pathogenicity island 1 type III secretion system through HilD. J Bacteriol 190: 476–486.
    • (2008) J Bacteriol , vol.190 , pp. 476-486
    • Ellermeier, J.R.1    Slauch, J.M.2
  • 31
    • 0028008417 scopus 로고
    • Division inhibition gene dicF of Escherichia coli reveals a widespread group of prophage sequences in bacterial genomes
    • Faubladier, M., and Bouche, J.P. (1994) Division inhibition gene dicF of Escherichia coli reveals a widespread group of prophage sequences in bacterial genomes. J Bacteriol 176: 1150–1156.
    • (1994) J Bacteriol , vol.176 , pp. 1150-1156
    • Faubladier, M.1    Bouche, J.P.2
  • 32
    • 0025355785 scopus 로고
    • Escherichia coli cell division inhibitor DicF-RNA of the dicB operon. Evidence for its generation in vivo by transcription termination and by RNase III and RNase E-dependent processing
    • Faubladier, M., Cam, K., and Bouche, J.P. (1990) Escherichia coli cell division inhibitor DicF-RNA of the dicB operon. Evidence for its generation in vivo by transcription termination and by RNase III and RNase E-dependent processing. J Mol Biol 212: 461471.
    • (1990) J Mol Biol , vol.212 , pp. 461471
    • Faubladier, M.1    Cam, K.2    Bouche, J.P.3
  • 33
    • 84920992591 scopus 로고    scopus 로고
    • A qrr noncoding RNA deploys four different regulatory mechanisms to optimize quorum-sensing dynamics
    • Feng, L., Rutherford, S.T., Papenfort, K., Bagert, J.D., van Kessel, J.C., Tirrell, D.A., et al. (2015) A qrr noncoding RNA deploys four different regulatory mechanisms to optimize quorum-sensing dynamics. Cell 160: 228–240.
    • (2015) Cell , vol.160 , pp. 228-240
    • Feng, L.1    Rutherford, S.T.2    Papenfort, K.3    Bagert, J.D.4    van Kessel, J.C.5    Tirrell, D.A.6
  • 34
    • 84858860817 scopus 로고    scopus 로고
    • A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD
    • Fröhlich, K.S., Papenfort, K., Berger, A.A., and Vogel, J. (2012) A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD. Nucleic Acids Res 40: 3623–3640.
    • (2012) Nucleic Acids Res , vol.40 , pp. 3623-3640
    • Fröhlich, K.S.1    Papenfort, K.2    Berger, A.A.3    Vogel, J.4
  • 35
    • 84887826391 scopus 로고    scopus 로고
    • A small RNA activates CFA synthase by isoform-specific mRNA stabilization
    • Fröhlich, K.S., Papenfort, K., Fekete, A., and Vogel, J. (2013) A small RNA activates CFA synthase by isoform-specific mRNA stabilization. EMBO J 32: 2963–2979.
    • (2013) EMBO J , vol.32 , pp. 2963-2979
    • Fröhlich, K.S.1    Papenfort, K.2    Fekete, A.3    Vogel, J.4
  • 36
    • 79958047291 scopus 로고    scopus 로고
    • cis-antisense RNA, another level of gene regulation in bacteria
    • Georg, J., and Hess, W.R. (2011) cis-antisense RNA, another level of gene regulation in bacteria. Microbiol Mol Biol Rev 75: 286–300.
    • (2011) Microbiol Mol Biol Rev , vol.75 , pp. 286-300
    • Georg, J.1    Hess, W.R.2
  • 37
    • 84921283583 scopus 로고    scopus 로고
    • BREX is a novel phage resistance system widespread in microbial genomes
    • Goldfarb, T., Sberro, H., Weinstock, E., Cohen, O., Doron, S., Charpak-Amikam, Y., et al. (2015) BREX is a novel phage resistance system widespread in microbial genomes. EMBO J 34: 169–183.
    • (2015) EMBO J , vol.34 , pp. 169-183
    • Goldfarb, T.1    Sberro, H.2    Weinstock, E.3    Cohen, O.4    Doron, S.5    Charpak-Amikam, Y.6
  • 38
    • 80053458416 scopus 로고    scopus 로고
    • A Salmonella small non-coding RNA facilitates bacterial invasion and intracellular replication by modulating the expression of virulence factors
    • Gong, H., Vu, G.P., Bai, Y., Chan, E., Wu, R., Yang, E., et al. (2011) A Salmonella small non-coding RNA facilitates bacterial invasion and intracellular replication by modulating the expression of virulence factors. PLoS Pathog 7: e1002120.
    • (2011) PLoS Pathog , vol.7
    • Gong, H.1    Vu, G.P.2    Bai, Y.3    Chan, E.4    Wu, R.5    Yang, E.6
  • 39
    • 84920056771 scopus 로고
    • The significance of pneumococcal types
    • Griffith, F. (1928) The significance of pneumococcal types. J Hyg (Lond) 27: 113–159.
    • (1928) J Hyg (Lond) , vol.27 , pp. 113-159
    • Griffith, F.1
  • 40
    • 84904362234 scopus 로고    scopus 로고
    • MicL, a new sigmaE-dependent sRNA, combats envelope stress by repressing synthesis of Lpp, the major outer membrane lipoprotein
    • Guo, M.S., Updegrove, T.B., Gogol, E.B., Shabalina, S.A., Gross, C.A., and Storz, G. (2014) MicL, a new sigmaE-dependent sRNA, combats envelope stress by repressing synthesis of Lpp, the major outer membrane lipoprotein. Genes Dev 28: 1620–1634.
    • (2014) Genes Dev , vol.28 , pp. 1620-1634
    • Guo, M.S.1    Updegrove, T.B.2    Gogol, E.B.3    Shabalina, S.A.4    Gross, C.A.5    Storz, G.6
  • 41
    • 0035961748 scopus 로고    scopus 로고
    • Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12
    • Hayashi, T., Makino, K., Ohnishi, M., Kurokawa, K., Ishii, K., Yokoyama, K., et al. (2001) Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. DNA Res 8: 11–22.
    • (2001) DNA Res , vol.8 , pp. 11-22
    • Hayashi, T.1    Makino, K.2    Ohnishi, M.3    Kurokawa, K.4    Ishii, K.5    Yokoyama, K.6
  • 42
    • 84860774336 scopus 로고    scopus 로고
    • sRNAs and the virulence of Salmonella enterica serovar Typhimurium. RNA
    • Hebrard, M., Kroger, C., Srikumar, S., Colgan, A., Handler, K., and Hinton, J.C. (2012) sRNAs and the virulence of Salmonella enterica serovar Typhimurium. RNA Biol 9: 437–445.
    • (2012) Biol , vol.9 , pp. 437-445
    • Hebrard, M.1    Kroger, C.2    Srikumar, S.3    Colgan, A.4    Handler, K.5    Hinton, J.C.6
  • 43
    • 4644369350 scopus 로고    scopus 로고
    • Evolution of pathogenicity islands of Salmonella enterica
    • Hensel, M. (2004) Evolution of pathogenicity islands of Salmonella enterica. Int J Med Microbiol 294: 95–102.
    • (2004) Int J Med Microbiol , vol.294 , pp. 95-102
    • Hensel, M.1
  • 45
    • 70449700233 scopus 로고    scopus 로고
    • Homologs of the small RNA SgrS are broadly distributed in enteric bacteria but have diverged in size and sequence
    • Horler, R.S., and Vanderpool, C.K. (2009) Homologs of the small RNA SgrS are broadly distributed in enteric bacteria but have diverged in size and sequence. Nucleic Acids Res 37: 5465–5476.
    • (2009) Nucleic Acids Res , vol.37 , pp. 5465-5476
    • Horler, R.S.1    Vanderpool, C.K.2
  • 46
    • 84894093468 scopus 로고    scopus 로고
    • Bacterial transformation: distribution, shared mechanisms and divergent control
    • Johnston, C., Martin, B., Fichant, G., Polard, P., and Claverys, J.P. (2014) Bacterial transformation: distribution, shared mechanisms and divergent control. Nat Rev Microbiol 12: 181–196.
    • (2014) Nat Rev Microbiol , vol.12 , pp. 181-196
    • Johnston, C.1    Martin, B.2    Fichant, G.3    Polard, P.4    Claverys, J.P.5
  • 47
    • 84921776252 scopus 로고    scopus 로고
    • Horizontal gene transfer in human pathogens
    • Juhas, M. (2015) Horizontal gene transfer in human pathogens. Crit Rev Microbiol 41: 101–108.
    • (2015) Crit Rev Microbiol , vol.41 , pp. 101-108
    • Juhas, M.1
  • 48
    • 84884987724 scopus 로고    scopus 로고
    • Identification of target transcripts regulated by small RNA RyhB homologs in Salmonella: RyhB-2 regulates motility phenotype
    • Kim, J.N., and Kwon, Y.M. (2013) Identification of target transcripts regulated by small RNA RyhB homologs in Salmonella: RyhB-2 regulates motility phenotype. Microbiol Res 168: 621–629.
    • (2013) Microbiol Res , vol.168 , pp. 621-629
    • Kim, J.N.1    Kwon, Y.M.2
  • 49
    • 0038385185 scopus 로고    scopus 로고
    • Secretion of a soluble colonization factor by the TCP type 4 pilus biogenesis pathway in Vibrio cholerae
    • Kirn, T.J., Bose, N., and Taylor, R.K. (2003) Secretion of a soluble colonization factor by the TCP type 4 pilus biogenesis pathway in Vibrio cholerae. Mol Microbiol 49: 81–92.
    • (2003) Mol Microbiol , vol.49 , pp. 81-92
    • Kirn, T.J.1    Bose, N.2    Taylor, R.K.3
  • 50
    • 84927693101 scopus 로고    scopus 로고
    • Bacteria-phage coevolution as a driver of ecological and evolutionary processes in microbial communities
    • Koskella, B., and Brockhurst, M.A. (2014) Bacteria-phage coevolution as a driver of ecological and evolutionary processes in microbial communities. FEMS Microbiol Rev 38: 916–931.
    • (2014) FEMS Microbiol Rev , vol.38 , pp. 916-931
    • Koskella, B.1    Brockhurst, M.A.2
  • 51
    • 84908067413 scopus 로고    scopus 로고
    • Temperature-driven differential gene expression by RNA thermosensors
    • Krajewski, S.S., and Narberhaus, F. (2014) Temperature-driven differential gene expression by RNA thermosensors. Biochim Biophys Acta 1839: 978–988.
    • (2014) Biochim Biophys Acta , vol.1839 , pp. 978-988
    • Krajewski, S.S.1    Narberhaus, F.2
  • 54
    • 84925148541 scopus 로고    scopus 로고
    • Salmonellae interactions with host processes
    • LaRock, D.L., Chaudhary, A., and Miller, S.I. (2015) Salmonellae interactions with host processes. Nat Rev Microbiol 13: 191–205.
    • (2015) Nat Rev Microbiol , vol.13 , pp. 191-205
    • LaRock, D.L.1    Chaudhary, A.2    Miller, S.I.3
  • 55
    • 84874773702 scopus 로고    scopus 로고
    • Role of the Salmonella enterica serovar Typhi Fur regulator and small RNAs RfrA and RfrB in iron homeostasis and interaction with host cells
    • Leclerc, J.M., Dozois, C.M., and Daigle, F. (2013) Role of the Salmonella enterica serovar Typhi Fur regulator and small RNAs RfrA and RfrB in iron homeostasis and interaction with host cells. Microbiology 159: 591–602.
    • (2013) Microbiology , vol.159 , pp. 591-602
    • Leclerc, J.M.1    Dozois, C.M.2    Daigle, F.3
  • 56
    • 84879824806 scopus 로고    scopus 로고
    • RaoN, a small RNA encoded within Salmonella pathogenicity island-11, confers resistance to macrophage-induced stress
    • Lee, Y.H., Kim, S., Helmann, J.D., Kim, B.H., and Park, Y.K. (2013) RaoN, a small RNA encoded within Salmonella pathogenicity island-11, confers resistance to macrophage-induced stress. Microbiology 159: 1366–1378.
    • (2013) Microbiology , vol.159 , pp. 1366-1378
    • Lee, Y.H.1    Kim, S.2    Helmann, J.D.3    Kim, B.H.4    Park, Y.K.5
  • 57
    • 78049423172 scopus 로고    scopus 로고
    • Turn-over of the small non-coding RNA RprA in E. coli is influenced by osmolarity
    • Madhugiri, R., Basineni, S.R., and Klug, G. (2010) Turn-over of the small non-coding RNA RprA in E. coli is influenced by osmolarity. Mol Genet Genomics 284: 307–318.
    • (2010) Mol Genet Genomics , vol.284 , pp. 307-318
    • Madhugiri, R.1    Basineni, S.R.2    Klug, G.3
  • 58
    • 25144451503 scopus 로고    scopus 로고
    • The Rcs phosphorelay: a complex signal transduction system
    • Majdalani, N., and Gottesman, S. (2005) The Rcs phosphorelay: a complex signal transduction system. Annu Rev Microbiol 59: 379–405.
    • (2005) Annu Rev Microbiol , vol.59 , pp. 379-405
    • Majdalani, N.1    Gottesman, S.2
  • 59
    • 0032514739 scopus 로고    scopus 로고
    • DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcription
    • Majdalani, N., Cunning, C., Sledjeski, D., Elliott, T., and Gottesman, S. (1998) DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcription. Proc Natl Acad Sci U S A 95: 12462–12467.
    • (1998) Proc Natl Acad Sci U S A , vol.95 , pp. 12462-12467
    • Majdalani, N.1    Cunning, C.2    Sledjeski, D.3    Elliott, T.4    Gottesman, S.5
  • 60
    • 0036437019 scopus 로고    scopus 로고
    • Regulation and mode of action of the second small RNA activator of RpoS translation, RprA
    • Majdalani, N., Hernandez, D., and Gottesman, S. (2002) Regulation and mode of action of the second small RNA activator of RpoS translation, RprA. Mol Microbiol 46: 813–826.
    • (2002) Mol Microbiol , vol.46 , pp. 813-826
    • Majdalani, N.1    Hernandez, D.2    Gottesman, S.3
  • 61
    • 48749115865 scopus 로고    scopus 로고
    • RNA, but not protein partners, is directly responsible for translational silencing by a bacterial Hfq-binding small RNA
    • Maki, K., Uno, K., Morita, T., and Aiba, H. (2008) RNA, but not protein partners, is directly responsible for translational silencing by a bacterial Hfq-binding small RNA. Proc Natl Acad Sci U S A 105: 10332–10337.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 10332-10337
    • Maki, K.1    Uno, K.2    Morita, T.3    Aiba, H.4
  • 62
    • 77951519861 scopus 로고    scopus 로고
    • A minimal base-pairing region of a bacterial small RNA SgrS required for translational repression of ptsG mRNA
    • Maki, K., Morita, T., Otaka, H., and Aiba, H. (2010) A minimal base-pairing region of a bacterial small RNA SgrS required for translational repression of ptsG mRNA. Mol Microbiol 76: 782–792.
    • (2010) Mol Microbiol , vol.76 , pp. 782-792
    • Maki, K.1    Morita, T.2    Otaka, H.3    Aiba, H.4
  • 63
    • 84943160849 scopus 로고    scopus 로고
    • CRISPR-Cas immunity in prokaryotes
    • Marraffini, L.A. (2015) CRISPR-Cas immunity in prokaryotes. Nature 526: 55–61.
    • (2015) Nature , vol.526 , pp. 55-61
    • Marraffini, L.A.1
  • 64
    • 84923594078 scopus 로고    scopus 로고
    • Unexpected versatility in bacterial riboswitches
    • Mellin, J.R., and Cossart, P. (2015) Unexpected versatility in bacterial riboswitches. Trends Genet 31: 150–156.
    • (2015) Trends Genet , vol.31 , pp. 150-156
    • Mellin, J.R.1    Cossart, P.2
  • 65
    • 84964575952 scopus 로고    scopus 로고
    • Regulation of competence-mediated horizontal gene transfer in the natural habitat of Vibrio cholerae
    • Metzger, L.C., and Blokesch, M. (2015) Regulation of competence-mediated horizontal gene transfer in the natural habitat of Vibrio cholerae. Curr Opin Microbiol 30: 1–7.
    • (2015) Curr Opin Microbiol , vol.30 , pp. 1-7
    • Metzger, L.C.1    Blokesch, M.2
  • 66
    • 84931570743 scopus 로고    scopus 로고
    • Cross talk between ABC transporter mRNAs via a target mRNA-derived sponge of the GcvB small RNA
    • Miyakoshi, M., Chao, Y., and Vogel, J. (2015a) Cross talk between ABC transporter mRNAs via a target mRNA-derived sponge of the GcvB small RNA. EMBO J 34: 1478–1492.
    • (2015) EMBO J , vol.34 , pp. 1478-1492
    • Miyakoshi, M.1    Chao, Y.2    Vogel, J.3
  • 67
    • 84922444526 scopus 로고    scopus 로고
    • Regulatory small RNAs from the 3' regions of bacterial mRNAs
    • Miyakoshi, M., Chao, Y., and Vogel, J. (2015b) Regulatory small RNAs from the 3' regions of bacterial mRNAs. Curr Opin Microbiol 24: 132–139.
    • (2015) Curr Opin Microbiol , vol.24 , pp. 132-139
    • Miyakoshi, M.1    Chao, Y.2    Vogel, J.3
  • 68
    • 0029113833 scopus 로고
    • Activation of alpha-toxin translation in Staphylococcus aureus by the trans-encoded antisense RNA, RNAIII
    • Morfeldt, E., Taylor, D., von Gabain, A., and Arvidson, S. (1995) Activation of alpha-toxin translation in Staphylococcus aureus by the trans-encoded antisense RNA, RNAIII. EMBO J 14: 4569–4577.
    • (1995) EMBO J , vol.14 , pp. 4569-4577
    • Morfeldt, E.1    Taylor, D.2    von Gabain, A.3    Arvidson, S.4
  • 69
    • 84860757645 scopus 로고    scopus 로고
    • Dynamics of Salmonella small RNA expression in non-growing bacteria located inside eukaryotic cells
    • Ortega, A.D., Gonzalo-Asensio, J., and Garcia-del Portillo, F. (2012) Dynamics of Salmonella small RNA expression in non-growing bacteria located inside eukaryotic cells. RNA Biol 9: 469–488.
    • (2012) RNA Biol , vol.9 , pp. 469-488
    • Ortega, A.D.1    Gonzalo-Asensio, J.2    Garcia-del Portillo, F.3
  • 70
    • 80051973174 scopus 로고    scopus 로고
    • PolyU tail of rho-independent terminator of bacterial small RNAs is essential for Hfq action
    • Otaka, H., Ishikawa, H., Morita, T., and Aiba, H. (2011) PolyU tail of rho-independent terminator of bacterial small RNAs is essential for Hfq action. Proc Natl Acad Sci U S A 108: 13059–13064.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 13059-13064
    • Otaka, H.1    Ishikawa, H.2    Morita, T.3    Aiba, H.4
  • 72
    • 84939502874 scopus 로고    scopus 로고
    • Target activation by regulatory RNAs in bacteria
    • Papenfort, K., and Vanderpool, C.K. (2015) Target activation by regulatory RNAs in bacteria. FEMS Microbiol Rev 39: 362–378.
    • (2015) FEMS Microbiol Rev , vol.39 , pp. 362-378
    • Papenfort, K.1    Vanderpool, C.K.2
  • 73
    • 77958028354 scopus 로고    scopus 로고
    • Regulatory RNA in bacterial pathogens
    • Papenfort, K., and Vogel, J. (2010) Regulatory RNA in bacterial pathogens. Cell Host Microbe 8: 116–127.
    • (2010) Cell Host Microbe , vol.8 , pp. 116-127
    • Papenfort, K.1    Vogel, J.2
  • 74
    • 84915760848 scopus 로고    scopus 로고
    • Small RNA functions in carbon metabolism and virulence of enteric pathogens
    • Papenfort, K., and Vogel, J. (2014) Small RNA functions in carbon metabolism and virulence of enteric pathogens. Front Cell Infect Microbiol 4: 91.
    • (2014) Front Cell Infect Microbiol , vol.4 , pp. 91
    • Papenfort, K.1    Vogel, J.2
  • 75
    • 33751383274 scopus 로고    scopus 로고
    • SigmaE-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay
    • Papenfort, K., Pfeiffer, V., Mika, F., Lucchini, S., Hinton, J.C., and Vogel, J. (2006) SigmaE-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay. Mol Microbiol 62: 1674–1688.
    • (2006) Mol Microbiol , vol.62 , pp. 1674-1688
    • Papenfort, K.1    Pfeiffer, V.2    Mika, F.3    Lucchini, S.4    Hinton, J.C.5    Vogel, J.6
  • 76
    • 70350176597 scopus 로고    scopus 로고
    • Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA
    • Papenfort, K., Said, N., Welsink, T., Lucchini, S., Hinton, J.C., and Vogel, J. (2009) Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA. Mol Microbiol 74: 139–158.
    • (2009) Mol Microbiol , vol.74 , pp. 139-158
    • Papenfort, K.1    Said, N.2    Welsink, T.3    Lucchini, S.4    Hinton, J.C.5    Vogel, J.6
  • 77
    • 78650532236 scopus 로고    scopus 로고
    • Evidence for an autonomous 5' target recognition domain in an Hfq-associated small RNA
    • Papenfort, K., Bouvier, M., Mika, F., Sharma, C.M., and Vogel, J. (2010) Evidence for an autonomous 5' target recognition domain in an Hfq-associated small RNA. Proc Natl Acad Sci U S A 107: 20435–20440.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 20435-20440
    • Papenfort, K.1    Bouvier, M.2    Mika, F.3    Sharma, C.M.4    Vogel, J.5
  • 78
    • 84859451156 scopus 로고    scopus 로고
    • The ancestral SgrS RNA discriminates horizontally acquired Salmonella mRNAs through a single G-U wobble pair
    • Papenfort, K., Podkaminski, D., Hinton, J.C., and Vogel, J. (2012) The ancestral SgrS RNA discriminates horizontally acquired Salmonella mRNAs through a single G-U wobble pair. Proc Natl Acad Sci U S A 109: E757–764.
    • (2012) Proc Natl Acad Sci U S A , vol.109 , pp. E757-764
    • Papenfort, K.1    Podkaminski, D.2    Hinton, J.C.3    Vogel, J.4
  • 79
    • 84876234571 scopus 로고    scopus 로고
    • Small RNA-mediated activation of sugar phosphatase mRNA regulates glucose homeostasis
    • Papenfort, K., Sun, Y., Miyakoshi, M., Vanderpool, C.K., and Vogel, J. (2013) Small RNA-mediated activation of sugar phosphatase mRNA regulates glucose homeostasis. Cell 153: 426–437.
    • (2013) Cell , vol.153 , pp. 426-437
    • Papenfort, K.1    Sun, Y.2    Miyakoshi, M.3    Vanderpool, C.K.4    Vogel, J.5
  • 80
    • 84940404135 scopus 로고    scopus 로고
    • Small RNA-based feedforward loop with AND-gate logic regulates extrachromosomal DNA transfer in Salmonella
    • Papenfort, K., Espinosa, E., Casadesus, J., and Vogel, J. (2015a) Small RNA-based feedforward loop with AND-gate logic regulates extrachromosomal DNA transfer in Salmonella. Proc Natl Acad Sci U S A 112: E4772–4781.
    • (2015) Proc Natl Acad Sci U S A , vol.112 , pp. E4772-4781
    • Papenfort, K.1    Espinosa, E.2    Casadesus, J.3    Vogel, J.4
  • 81
    • 84922440514 scopus 로고    scopus 로고
    • Differential RNA-seq of Vibrio cholerae identifies the VqmR small RNA as a regulator of biofilm formation
    • Papenfort, K., Forstner, K.U., Cong, J.P., Sharma, C.M., and Bassler, B.L. (2015b) Differential RNA-seq of Vibrio cholerae identifies the VqmR small RNA as a regulator of biofilm formation. Proc Natl Acad Sci U S A 112: E766–775.
    • (2015) Proc Natl Acad Sci U S A , vol.112 , pp. E766-775
    • Papenfort, K.1    Forstner, K.U.2    Cong, J.P.3    Sharma, C.M.4    Bassler, B.L.5
  • 83
    • 36148969305 scopus 로고    scopus 로고
    • A small non-coding RNA of the invasion gene island (SPI-1) represses outer membrane protein synthesis from the Salmonella core genome
    • Pfeiffer, V., Sittka, A., Tomer, R., Tedin, K., Brinkmann, V., and Vogel, J. (2007) A small non-coding RNA of the invasion gene island (SPI-1) represses outer membrane protein synthesis from the Salmonella core genome. Mol Microbiol 66: 1174–1191.
    • (2007) Mol Microbiol , vol.66 , pp. 1174-1191
    • Pfeiffer, V.1    Sittka, A.2    Tomer, R.3    Tedin, K.4    Brinkmann, V.5    Vogel, J.6
  • 84
    • 68249156618 scopus 로고    scopus 로고
    • Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation
    • Pfeiffer, V., Papenfort, K., Lucchini, S., Hinton, J.C., and Vogel, J. (2009) Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation. Nat Struct Mol Biol 16: 840–846.
    • (2009) Nat Struct Mol Biol , vol.16 , pp. 840-846
    • Pfeiffer, V.1    Papenfort, K.2    Lucchini, S.3    Hinton, J.C.4    Vogel, J.5
  • 85
    • 84860211390 scopus 로고    scopus 로고
    • An in silico model for identification of small RNAs in whole bacterial genomes: characterization of antisense RNAs in pathogenic Escherichia coli and Streptococcus agalactiae strains
    • Pichon, C., du Merle, L., Caliot, M.E., Trieu-Cuot, P., and Le Bouguenec, C. (2012) An in silico model for identification of small RNAs in whole bacterial genomes: characterization of antisense RNAs in pathogenic Escherichia coli and Streptococcus agalactiae strains. Nucleic Acids Res 40: 2846–2861.
    • (2012) Nucleic Acids Res , vol.40 , pp. 2846-2861
    • Pichon, C.1    du Merle, L.2    Caliot, M.E.3    Trieu-Cuot, P.4    Le Bouguenec, C.5
  • 86
    • 84878608047 scopus 로고    scopus 로고
    • The AfaR small RNA controls expression of the AfaD-VIII invasin in pathogenic Escherichia coli strains
    • Pichon, C., du Merle, L., Lequeutre, I., and Le Bouguenec, C. (2013) The AfaR small RNA controls expression of the AfaD-VIII invasin in pathogenic Escherichia coli strains. Nucleic Acids Res 41: 5469–5482.
    • (2013) Nucleic Acids Res , vol.41 , pp. 5469-5482
    • Pichon, C.1    du Merle, L.2    Lequeutre, I.3    Le Bouguenec, C.4
  • 87
    • 84867056798 scopus 로고    scopus 로고
    • Small RNA binding-site multiplicity involved in translational regulation of a polycistronic mRNA
    • Rice, J.B., Balasubramanian, D., and Vanderpool, C.K. (2012) Small RNA binding-site multiplicity involved in translational regulation of a polycistronic mRNA. Proc Natl Acad Sci U S A 109: E2691–2698.
    • (2012) Proc Natl Acad Sci U S A , vol.109 , pp. E2691-2698
    • Rice, J.B.1    Balasubramanian, D.2    Vanderpool, C.K.3
  • 88
    • 78649586895 scopus 로고    scopus 로고
    • The Vibrio cholerae virulence regulatory cascade controls glucose uptake through activation of TarA, a small regulatory RNA
    • Richard, A.L., Withey, J.H., Beyhan, S., Yildiz, F., and DiRita, V.J. (2010) The Vibrio cholerae virulence regulatory cascade controls glucose uptake through activation of TarA, a small regulatory RNA. Mol Microbiol 78: 1171–1181.
    • (2010) Mol Microbiol , vol.78 , pp. 1171-1181
    • Richard, A.L.1    Withey, J.H.2    Beyhan, S.3    Yildiz, F.4    DiRita, V.J.5
  • 89
    • 0033186120 scopus 로고    scopus 로고
    • The virulence plasmids of Salmonella
    • Rotger, R., and Casadesus, J. (1999) The virulence plasmids of Salmonella. Int Microbiol 2: 177–184.
    • (1999) Int Microbiol , vol.2 , pp. 177-184
    • Rotger, R.1    Casadesus, J.2
  • 90
    • 77749314807 scopus 로고    scopus 로고
    • So similar, yet so different: uncovering distinctive features in the genomes of Salmonella enterica serovars Typhimurium and Typhi
    • Sabbagh, S.C., Forest, C.G., Lepage, C., Leclerc, J.M., and Daigle, F. (2010) So similar, yet so different: uncovering distinctive features in the genomes of Salmonella enterica serovars Typhimurium and Typhi. FEMS Microbiol Lett 305: 1–13.
    • (2010) FEMS Microbiol Lett , vol.305 , pp. 1-13
    • Sabbagh, S.C.1    Forest, C.G.2    Lepage, C.3    Leclerc, J.M.4    Daigle, F.5
  • 91
    • 84861442326 scopus 로고    scopus 로고
    • Regulating iron storage and metabolism with RNA: an overview of posttranscriptional controls of intracellular iron homeostasis
    • Salvail, H., and Masse, E. (2012) Regulating iron storage and metabolism with RNA: an overview of posttranscriptional controls of intracellular iron homeostasis. Wiley Interdiscip Rev RNA 3: 26–36.
    • (2012) Wiley Interdiscip Rev RNA , vol.3 , pp. 26-36
    • Salvail, H.1    Masse, E.2
  • 92
    • 80051962605 scopus 로고    scopus 로고
    • Structural basis for RNA 3'-end recognition by Hfq
    • Sauer, E., and Weichenrieder, O. (2011) Structural basis for RNA 3'-end recognition by Hfq. Proc Natl Acad Sci U S A 108: 13065–13070.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 13065-13070
    • Sauer, E.1    Weichenrieder, O.2
  • 93
    • 0016611081 scopus 로고
    • Temperate Bacteriophage which causes the production of a new major outer membrane protein by Escherichia coli
    • Schnaitman, C., Smith, D., and de Salsas, M.F. (1975) Temperate Bacteriophage which causes the production of a new major outer membrane protein by Escherichia coli. J Virol 15: 1121–1130.
    • (1975) J Virol , vol.15 , pp. 1121-1130
    • Schnaitman, C.1    Smith, D.2    de Salsas, M.F.3
  • 94
    • 84901638934 scopus 로고    scopus 로고
    • Quorum regulatory small RNAs repress type VI secretion in Vibrio cholerae
    • Shao, Y., and Bassler, B.L. (2014) Quorum regulatory small RNAs repress type VI secretion in Vibrio cholerae. Mol Microbiol 92: 921–930.
    • (2014) Mol Microbiol , vol.92 , pp. 921-930
    • Shao, Y.1    Bassler, B.L.2
  • 95
    • 35948970194 scopus 로고    scopus 로고
    • A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites
    • Sharma, C.M., Darfeuille, F., Plantinga, T.H., and Vogel, J. (2007) A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites. Genes Dev 21: 2804–2817.
    • (2007) Genes Dev , vol.21 , pp. 2804-2817
    • Sharma, C.M.1    Darfeuille, F.2    Plantinga, T.H.3    Vogel, J.4
  • 96
    • 80051929071 scopus 로고    scopus 로고
    • Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA
    • Sharma, C.M., Papenfort, K., Pernitzsch, S.R., Mollenkopf, H.J., Hinton, J.C., and Vogel, J. (2011) Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA. Mol Microbiol 81: 1144–1165.
    • (2011) Mol Microbiol , vol.81 , pp. 1144-1165
    • Sharma, C.M.1    Papenfort, K.2    Pernitzsch, S.R.3    Mollenkopf, H.J.4    Hinton, J.C.5    Vogel, J.6
  • 97
    • 72849114230 scopus 로고    scopus 로고
    • Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity
    • Sorek, R., and Cossart, P. (2010) Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity. Nat Rev Genet 11: 9–16.
    • (2010) Nat Rev Genet , vol.11 , pp. 9-16
    • Sorek, R.1    Cossart, P.2
  • 98
    • 84948990820 scopus 로고    scopus 로고
    • RNA-seq brings new insights to the intra-macrophage transcriptome of Salmonella Typhimurium
    • Srikumar, S., Kroger, C., Hebrard, M., Colgan, A., Owen, S.V., Sivasankaran, S.K., et al., (2015) RNA-seq brings new insights to the intra-macrophage transcriptome of Salmonella Typhimurium. PLoS Pathog 11: e1005262.
    • (2015) PLoS Pathog , vol.11
    • Srikumar, S.1    Kroger, C.2    Hebrard, M.3    Colgan, A.4    Owen, S.V.5    Sivasankaran, S.K.6
  • 99
    • 84896480985 scopus 로고    scopus 로고
    • A novel small regulatory RNA enhances cell motility in enterohemorrhagic Escherichia coli
    • Sudo, N., Soma, A., Muto, A., Iyoda, S., Suh, M., Kurihara, N., et al. (2014) A novel small regulatory RNA enhances cell motility in enterohemorrhagic Escherichia coli. J Gen Appl Microbiol 60: 44–50.
    • (2014) J Gen Appl Microbiol , vol.60 , pp. 44-50
    • Sudo, N.1    Soma, A.2    Muto, A.3    Iyoda, S.4    Suh, M.5    Kurihara, N.6
  • 100
    • 0036714801 scopus 로고    scopus 로고
    • Predicted structure and phyletic distribution of the RNA-binding protein Hfq
    • Sun, X., Zhulin, I., and Wartell, R.M. (2002) Predicted structure and phyletic distribution of the RNA-binding protein Hfq. Nucleic Acids Res 30: 3662–3671.
    • (2002) Nucleic Acids Res , vol.30 , pp. 3662-3671
    • Sun, X.1    Zhulin, I.2    Wartell, R.M.3
  • 101
    • 0026579213 scopus 로고
    • Regulation of the expression of the cell-cycle gene ftsZ by DicF antisense RNA. Division does not require a fixed number of FtsZ molecules
    • Tetart, F., and Bouche, J.P. (1992) Regulation of the expression of the cell-cycle gene ftsZ by DicF antisense RNA. Division does not require a fixed number of FtsZ molecules. Mol Microbiol 6: 615–620.
    • (1992) Mol Microbiol , vol.6 , pp. 615-620
    • Tetart, F.1    Bouche, J.P.2
  • 102
    • 84904467798 scopus 로고    scopus 로고
    • Identification of bacteriophage-encoded anti-sRNAs in pathogenic Escherichia coli
    • Tree, J.J., Granneman, S., McAteer, S.P., Tollervey, D., and Gally, D.L. (2014) Identification of bacteriophage-encoded anti-sRNAs in pathogenic Escherichia coli. Mol Cell 55: 199–213.
    • (2014) Mol Cell , vol.55 , pp. 199-213
    • Tree, J.J.1    Granneman, S.2    McAteer, S.P.3    Tollervey, D.4    Gally, D.L.5
  • 103
    • 8544271637 scopus 로고    scopus 로고
    • Involvement of a novel transcriptional activator and small RNA in post-transcriptional regulation of the glucose phosphoenolpyruvate phosphotransferase system
    • Vanderpool, C.K., and Gottesman, S. (2004) Involvement of a novel transcriptional activator and small RNA in post-transcriptional regulation of the glucose phosphoenolpyruvate phosphotransferase system. Mol Microbiol 54: 1076–1089.
    • (2004) Mol Microbiol , vol.54 , pp. 1076-1089
    • Vanderpool, C.K.1    Gottesman, S.2
  • 104
    • 84946073992 scopus 로고    scopus 로고
    • Transcriptomic analysis of Shiga-toxigenic bacteriophage carriage reveals a profound regulatory effect on acid resistance in Escherichia coli
    • Veses-Garcia, M., Liu, X., Rigden, D.J., Kenny, J.G., McCarthy, A.J., and Allison, H.E. (2015) Transcriptomic analysis of Shiga-toxigenic bacteriophage carriage reveals a profound regulatory effect on acid resistance in Escherichia coli. Appl Environ Microbiol 81: 8118–8125.
    • (2015) Appl Environ Microbiol , vol.81 , pp. 8118-8125
    • Veses-Garcia, M.1    Liu, X.2    Rigden, D.J.3    Kenny, J.G.4    McCarthy, A.J.5    Allison, H.E.6
  • 105
    • 79960433506 scopus 로고    scopus 로고
    • Hfq and its constellation of RNA
    • Vogel, J., and B.F. Luisi, (2011) Hfq and its constellation of RNA. Nat Rev Microbiol 9: 578–589.
    • (2011) Nat Rev Microbiol , vol.9 , pp. 578-589
    • Vogel, J.1    Luisi, B.F.2
  • 106
    • 84969794511 scopus 로고    scopus 로고
    • Hfqs in Bacillus anthracis: role of protein sequence variation in the structure and function of proteins in the Hfq family
    • Vrentas, C., Ghirlando, R., Keefer, A., Hu, Z., Tomczak, A., Gittis, A.G., et al. (2015) Hfqs in Bacillus anthracis: role of protein sequence variation in the structure and function of proteins in the Hfq family. Protein Sci 24: 1808–1819.
    • (2015) Protein Sci , vol.24 , pp. 1808-1819
    • Vrentas, C.1    Ghirlando, R.2    Keefer, A.3    Hu, Z.4    Tomczak, A.5    Gittis, A.G.6
  • 107
    • 38049115217 scopus 로고    scopus 로고
    • A dual function for a bacterial small RNA: SgrS performs base pairing-dependent regulation and encodes a functional polypeptide
    • Wadler, C.S., and Vanderpool, C.K. (2007) A dual function for a bacterial small RNA: SgrS performs base pairing-dependent regulation and encodes a functional polypeptide. Proc Natl Acad Sci U S A 104: 20454–20459.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 20454-20459
    • Wadler, C.S.1    Vanderpool, C.K.2
  • 108
    • 84879014020 scopus 로고    scopus 로고
    • Cycling of RNAs on Hfq
    • Wagner, E.G. (2013) Cycling of RNAs on Hfq. RNA Biol 10: 619–626.
    • (2013) RNA Biol , vol.10 , pp. 619-626
    • Wagner, E.G.1
  • 110
    • 84964262313 scopus 로고    scopus 로고
    • Dual RNA-seq unveils noncoding RNA functions in host-pathogen interactions
    • Westermann, A.J., Forstner, K.U., Amman, F., Barquist, L., Chao, Y., Schulte, L.N., et al., (2016) Dual RNA-seq unveils noncoding RNA functions in host-pathogen interactions. Nature 529: 496–501.
    • (2016) Nature , vol.529 , pp. 496-501
    • Westermann, A.J.1    Forstner, K.U.2    Amman, F.3    Barquist, L.4    Chao, Y.5    Schulte, L.N.6
  • 111
    • 77956932251 scopus 로고    scopus 로고
    • The amazing world of bacterial structured RNAs
    • Westhof, E. (2010) The amazing world of bacterial structured RNAs. Genome Biol 11: 108.
    • (2010) Genome Biol , vol.11 , pp. 108
    • Westhof, E.1
  • 112
    • 84910091088 scopus 로고    scopus 로고
    • Integrated circuits: how transcriptional silencing and counter-silencing facilitate bacterial evolution
    • Will, W.R., Navarre, W.W., and Fang, F.C. (2015) Integrated circuits: how transcriptional silencing and counter-silencing facilitate bacterial evolution. Curr Opin Microbiol 23: 8–13.
    • (2015) Curr Opin Microbiol , vol.23 , pp. 8-13
    • Will, W.R.1    Navarre, W.W.2    Fang, F.C.3
  • 113
    • 59649095559 scopus 로고    scopus 로고
    • Coordinated regulation of virulence during systemic infection of Salmonella enterica serovar Typhimurium
    • Yoon, H., McDermott, J.E., Porwollik, S., McClelland, M., and Heffron, F. (2009) Coordinated regulation of virulence during systemic infection of Salmonella enterica serovar Typhimurium. PLoS Pathog 5: e1000306.
    • (2009) PLoS Pathog , vol.5
    • Yoon, H.1    McDermott, J.E.2    Porwollik, S.3    McClelland, M.4    Heffron, F.5
  • 114
    • 78650485610 scopus 로고    scopus 로고
    • Quorum sensing and a global regulator TsrA control expression of type VI secretion and virulence in Vibrio cholerae
    • Zheng, J., Shin, O.S., Cameron, D.E., and Mekalanos, J.J. (2010) Quorum sensing and a global regulator TsrA control expression of type VI secretion and virulence in Vibrio cholerae. Proc Natl Acad Sci U S A 107: 21128–21133.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 21128-21133
    • Zheng, J.1    Shin, O.S.2    Cameron, D.E.3    Mekalanos, J.J.4
  • 115
    • 16844368281 scopus 로고    scopus 로고
    • MinC mutants deficient in MinD- and DicB-mediated cell division inhibition due to loss of interaction with MinD, DicB, or a septal component
    • Zhou, H., and Lutkenhaus, J. (2005) MinC mutants deficient in MinD- and DicB-mediated cell division inhibition due to loss of interaction with MinD, DicB, or a septal component. J Bacteriol 187: 2846–2857.
    • (2005) J Bacteriol , vol.187 , pp. 2846-2857
    • Zhou, H.1    Lutkenhaus, J.2


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