-
1
-
-
84859401055
-
Transcriptional and epigenetic control of T helper cell specification: molecular mechanisms underlying commitment and plasticity
-
[1] Kanno, Y., Vahedi, G., Hirahara, K., Singleton, K., O'Shea, J.J., Transcriptional and epigenetic control of T helper cell specification: molecular mechanisms underlying commitment and plasticity. Annu. Rev. Immunol. 30 (2012), 707–731.
-
(2012)
Annu. Rev. Immunol.
, vol.30
, pp. 707-731
-
-
Kanno, Y.1
Vahedi, G.2
Hirahara, K.3
Singleton, K.4
O'Shea, J.J.5
-
2
-
-
77952313777
-
Differentiation of effector CD4 T cell populations (*)
-
[2] Zhu, J., Yamane, H., Paul, W.E., Differentiation of effector CD4 T cell populations (*). Annu. Rev. Immunol. 28 (2010), 445–489.
-
(2010)
Annu. Rev. Immunol.
, vol.28
, pp. 445-489
-
-
Zhu, J.1
Yamane, H.2
Paul, W.E.3
-
3
-
-
61949463911
-
IL-17 and Th17 cells
-
[3] Korn, T., Bettelli, E., Oukka, M., Kuchroo, V.K., IL-17 and Th17 cells. Annu. Rev. Immunol. 27 (2009), 485–517.
-
(2009)
Annu. Rev. Immunol.
, vol.27
, pp. 485-517
-
-
Korn, T.1
Bettelli, E.2
Oukka, M.3
Kuchroo, V.K.4
-
4
-
-
33646012294
-
T helper cell differentiation: regulation by cis elements and epigenetics
-
[4] Lee, G.R., Kim, S.T., Spilianakis, C.G., Fields, P.E., Flavell, R.A., T helper cell differentiation: regulation by cis elements and epigenetics. Immunity 24 (2006), 369–379.
-
(2006)
Immunity
, vol.24
, pp. 369-379
-
-
Lee, G.R.1
Kim, S.T.2
Spilianakis, C.G.3
Fields, P.E.4
Flavell, R.A.5
-
5
-
-
58849092225
-
Epigenetic control of T-helper-cell differentiation
-
[5] Wilson, C.B., Rowell, E., Sekimata, M., Epigenetic control of T-helper-cell differentiation. Nat. Rev. Immunol. 9 (2009), 91–105.
-
(2009)
Nat. Rev. Immunol.
, vol.9
, pp. 91-105
-
-
Wilson, C.B.1
Rowell, E.2
Sekimata, M.3
-
6
-
-
0032412441
-
Modulation of chromatin structure regulates cytokine gene expression during T cell differentiation
-
[6] Agarwal, S., Rao, A., Modulation of chromatin structure regulates cytokine gene expression during T cell differentiation. Immunity 9 (1998), 765–775.
-
(1998)
Immunity
, vol.9
, pp. 765-775
-
-
Agarwal, S.1
Rao, A.2
-
7
-
-
45449086449
-
Long-range regulation of cytokine gene expression
-
[7] Rowell, E., Merkenschlager, M., Wilson, C.B., Long-range regulation of cytokine gene expression. Curr. Opin. Immunol. 20 (2008), 272–280.
-
(2008)
Curr. Opin. Immunol.
, vol.20
, pp. 272-280
-
-
Rowell, E.1
Merkenschlager, M.2
Wilson, C.B.3
-
8
-
-
0031593671
-
Th2-specific DNase I-hypersensitive sites in the murine IL-13 and IL-4 intergenic region
-
[8] Takemoto, N., Koyano-Nakagawa, N., Yokota, T., Arai, N., Miyatake, S., Arai, K., Th2-specific DNase I-hypersensitive sites in the murine IL-13 and IL-4 intergenic region. Int. Immunol. 10 (1998), 1981–1985.
-
(1998)
Int. Immunol.
, vol.10
, pp. 1981-1985
-
-
Takemoto, N.1
Koyano-Nakagawa, N.2
Yokota, T.3
Arai, N.4
Miyatake, S.5
Arai, K.6
-
9
-
-
0037963472
-
Regulation of the Th2 cytokine locus by a locus control region
-
[9] Lee, G.R., Fields, P.E., Griffin, T.J., Flavell, R.A., Regulation of the Th2 cytokine locus by a locus control region. Immunity 19 (2003), 145–153.
-
(2003)
Immunity
, vol.19
, pp. 145-153
-
-
Lee, G.R.1
Fields, P.E.2
Griffin, T.J.3
Flavell, R.A.4
-
10
-
-
10344234192
-
Th2-specific chromatin remodeling and enhancer activity in the Th2 cytokine locus control region
-
[10] Fields, P.E., Lee, G.R., Kim, S.T., Bartsevich, V.V., Flavell, R.A., Th2-specific chromatin remodeling and enhancer activity in the Th2 cytokine locus control region. Immunity 21 (2004), 865–876.
-
(2004)
Immunity
, vol.21
, pp. 865-876
-
-
Fields, P.E.1
Lee, G.R.2
Kim, S.T.3
Bartsevich, V.V.4
Flavell, R.A.5
-
11
-
-
8644220507
-
Molecular analysis of a locus control region in the T helper 2 cytokine gene cluster: a target for STAT6 but not GATA3
-
[11] Lee, D.U., Rao, A., Molecular analysis of a locus control region in the T helper 2 cytokine gene cluster: a target for STAT6 but not GATA3. Proc. Natl. Acad. Sci. U. S. A. 101 (2004), 16010–16015.
-
(2004)
Proc. Natl. Acad. Sci. U. S. A.
, vol.101
, pp. 16010-16015
-
-
Lee, D.U.1
Rao, A.2
-
12
-
-
12344250807
-
Hypersensitive site 7 of the TH2 locus control region is essential for expressing TH2 cytokine genes and for long-range intrachromosomal interactions
-
[12] Lee, G.R., Spilianakis, C.G., Flavell, R.A., Hypersensitive site 7 of the TH2 locus control region is essential for expressing TH2 cytokine genes and for long-range intrachromosomal interactions. Nat. Immunol. 6 (2005), 42–48.
-
(2005)
Nat. Immunol.
, vol.6
, pp. 42-48
-
-
Lee, G.R.1
Spilianakis, C.G.2
Flavell, R.A.3
-
13
-
-
84876841993
-
Hypersensitive site 6 of the Th2 locus control region is essential for Th2 cytokine expression
-
[13] Williams, A., Lee, G.R., Spilianakis, C.G., Hwang, S.S., Eisenbarth, S.C., Flavell, R.A., Hypersensitive site 6 of the Th2 locus control region is essential for Th2 cytokine expression. Proc. Natl. Acad. Sci. U. S. A. 110 (2013), 6955–6960.
-
(2013)
Proc. Natl. Acad. Sci. U. S. A.
, vol.110
, pp. 6955-6960
-
-
Williams, A.1
Lee, G.R.2
Spilianakis, C.G.3
Hwang, S.S.4
Eisenbarth, S.C.5
Flavell, R.A.6
-
14
-
-
5444237577
-
Long-range intrachromosomal interactions in the T helper type 2 cytokine locus
-
[14] Spilianakis, C.G., Flavell, R.A., Long-range intrachromosomal interactions in the T helper type 2 cytokine locus. Nat. Immunol. 5 (2004), 1017–1027.
-
(2004)
Nat. Immunol.
, vol.5
, pp. 1017-1027
-
-
Spilianakis, C.G.1
Flavell, R.A.2
-
15
-
-
20444494936
-
Interchromosomal associations between alternatively expressed loci
-
[15] Spilianakis, C.G., Lalioti, M.D., Town, T., Lee, G.R., Flavell, R.A., Interchromosomal associations between alternatively expressed loci. Nature 435 (2005), 637–645.
-
(2005)
Nature
, vol.435
, pp. 637-645
-
-
Spilianakis, C.G.1
Lalioti, M.D.2
Town, T.3
Lee, G.R.4
Flavell, R.A.5
-
16
-
-
84898047989
-
Oct-1 regulates IL-17 expression by directing interchromosomal associations in conjunction with CTCF in T cells
-
[16] Kim, L.K., Esplugues, E., Zorca, C.E., Parisi, F., Kluger, Y., Kim, T.H., Galjart, N.J., Flavell, R.A., Oct-1 regulates IL-17 expression by directing interchromosomal associations in conjunction with CTCF in T cells. Mol. Cell 54 (2014), 56–66.
-
(2014)
Mol. Cell
, vol.54
, pp. 56-66
-
-
Kim, L.K.1
Esplugues, E.2
Zorca, C.E.3
Parisi, F.4
Kluger, Y.5
Kim, T.H.6
Galjart, N.J.7
Flavell, R.A.8
-
17
-
-
77955127618
-
GATA-binding protein-3 regulates T helper type 2 cytokine and ifng loci through interaction with metastasis-associated protein 2
-
[17] Hwang, S.S., Lee, S., Lee, W., Lee, G.R., GATA-binding protein-3 regulates T helper type 2 cytokine and ifng loci through interaction with metastasis-associated protein 2. Immunology 131 (2010), 50–58.
-
(2010)
Immunology
, vol.131
, pp. 50-58
-
-
Hwang, S.S.1
Lee, S.2
Lee, W.3
Lee, G.R.4
-
18
-
-
84871948166
-
Transcription factor YY1 is essential for regulation of the Th2 cytokine locus and for Th2 cell differentiation
-
[18] Hwang, S.S., Kim, Y.U., Lee, S., Jang, S.W., Kim, M.K., Koh, B.H., Lee, W., Kim, J., Souabni, A., Busslinger, M., Lee, G.R., Transcription factor YY1 is essential for regulation of the Th2 cytokine locus and for Th2 cell differentiation. Proc. Natl. Acad. Sci. U. S. A. 110 (2013), 276–281.
-
(2013)
Proc. Natl. Acad. Sci. U. S. A.
, vol.110
, pp. 276-281
-
-
Hwang, S.S.1
Kim, Y.U.2
Lee, S.3
Jang, S.W.4
Kim, M.K.5
Koh, B.H.6
Lee, W.7
Kim, J.8
Souabni, A.9
Busslinger, M.10
Lee, G.R.11
-
19
-
-
78650304399
-
The enhancer HS2 critically regulates GATA-3-mediated Il4 transcription in T(H)2 cells
-
[19] Tanaka, S., Motomura, Y., Suzuki, Y., Yagi, R., Inoue, H., Miyatake, S., Kubo, M., The enhancer HS2 critically regulates GATA-3-mediated Il4 transcription in T(H)2 cells. Nat. Immunol. 12 (2011), 77–85.
-
(2011)
Nat. Immunol.
, vol.12
, pp. 77-85
-
-
Tanaka, S.1
Motomura, Y.2
Suzuki, Y.3
Yagi, R.4
Inoue, H.5
Miyatake, S.6
Kubo, M.7
-
20
-
-
79959354832
-
CCCTC-binding factor (CTCF) and cohesin influence the genomic architecture of the Igh locus and antisense transcription in pro-B cells
-
[20] Degner, S.C., Verma-Gaur, J., Wong, T.P., Bossen, C., Iverson, G.M., Torkamani, A., Vettermann, C., Lin, Y.C., Ju, Z., Schulz, D., Murre, C.S., Birshtein, B.K., Schork, N.J., Schlissel, M.S., Riblet, R., Murre, C., Feeney, A.J., CCCTC-binding factor (CTCF) and cohesin influence the genomic architecture of the Igh locus and antisense transcription in pro-B cells. Proc. Natl. Acad. Sci. U. S. A. 108 (2011), 9566–9571.
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
, pp. 9566-9571
-
-
Degner, S.C.1
Verma-Gaur, J.2
Wong, T.P.3
Bossen, C.4
Iverson, G.M.5
Torkamani, A.6
Vettermann, C.7
Lin, Y.C.8
Ju, Z.9
Schulz, D.10
Murre, C.S.11
Birshtein, B.K.12
Schork, N.J.13
Schlissel, M.S.14
Riblet, R.15
Murre, C.16
Feeney, A.J.17
-
21
-
-
70349756895
-
CCCTC-binding factor and the transcription factor T-bet orchestrate T helper 1 cell-specific structure and function at the interferon-gamma locus
-
[21] Sekimata, M., Perez-Melgosa, M., Miller, S.A., Weinmann, A.S., Sabo, P.J., Sandstrom, R., Dorschner, M.O., Stamatoyannopoulos, J.A., Wilson, C.B., CCCTC-binding factor and the transcription factor T-bet orchestrate T helper 1 cell-specific structure and function at the interferon-gamma locus. Immunity 31 (2009), 551–564.
-
(2009)
Immunity
, vol.31
, pp. 551-564
-
-
Sekimata, M.1
Perez-Melgosa, M.2
Miller, S.A.3
Weinmann, A.S.4
Sabo, P.J.5
Sandstrom, R.6
Dorschner, M.O.7
Stamatoyannopoulos, J.A.8
Wilson, C.B.9
-
22
-
-
67650997080
-
Cohesins form chromosomal cis-interactions at the developmentally regulated IFNG locus
-
[22] Hadjur, S., Williams, L.M., Ryan, N.K., Cobb, B.S., Sexton, T., Fraser, P., Fisher, A.G., Merkenschlager, M., Cohesins form chromosomal cis-interactions at the developmentally regulated IFNG locus. Nature 460 (2009), 410–413.
-
(2009)
Nature
, vol.460
, pp. 410-413
-
-
Hadjur, S.1
Williams, L.M.2
Ryan, N.K.3
Cobb, B.S.4
Sexton, T.5
Fraser, P.6
Fisher, A.G.7
Merkenschlager, M.8
-
23
-
-
84862781260
-
Transcription of Il17 and Il17f is controlled by conserved noncoding sequence 2
-
[23] Wang, X., Zhang, Y., Yang, X.O., Nurieva, R.I., Chang, S.H., Ojeda, S.S., Kang, H.S., Schluns, K.S., Gui, J., Jetten, A.M., Dong, C., Transcription of Il17 and Il17f is controlled by conserved noncoding sequence 2. Immunity 36 (2012), 23–31.
-
(2012)
Immunity
, vol.36
, pp. 23-31
-
-
Wang, X.1
Zhang, Y.2
Yang, X.O.3
Nurieva, R.I.4
Chang, S.H.5
Ojeda, S.S.6
Kang, H.S.7
Schluns, K.S.8
Gui, J.9
Jetten, A.M.10
Dong, C.11
-
24
-
-
36749019654
-
Activation-dependent intrachromosomal interactions formed by the TNF gene promoter and two distal enhancers
-
[24] Tsytsykova, A.V., Rajsbaum, R., Falvo, J.V., Ligeiro, F., Neely, S.R., Goldfeld, A.E., Activation-dependent intrachromosomal interactions formed by the TNF gene promoter and two distal enhancers. Proc. Natl. Acad. Sci. U. S. A. 104 (2007), 16850–16855.
-
(2007)
Proc. Natl. Acad. Sci. U. S. A.
, vol.104
, pp. 16850-16855
-
-
Tsytsykova, A.V.1
Rajsbaum, R.2
Falvo, J.V.3
Ligeiro, F.4
Neely, S.R.5
Goldfeld, A.E.6
-
25
-
-
52949133457
-
The meaning of gene positioning
-
[25] Takizawa, T., Meaburn, K.J., Misteli, T., The meaning of gene positioning. Cell 135 (2008), 9–13.
-
(2008)
Cell
, vol.135
, pp. 9-13
-
-
Takizawa, T.1
Meaburn, K.J.2
Misteli, T.3
-
26
-
-
84959422185
-
Transcription factors Oct-1 and GATA-3 cooperatively regulate Th2 cytokine gene expression via the RHS5 within the Th2 locus control region
-
e0148576
-
[26] Kim, K., Kim, N., Lee, G.R., Transcription factors Oct-1 and GATA-3 cooperatively regulate Th2 cytokine gene expression via the RHS5 within the Th2 locus control region. PLoS One, 11, 2016, e0148576.
-
(2016)
PLoS One
, vol.11
-
-
Kim, K.1
Kim, N.2
Lee, G.R.3
-
27
-
-
1242303895
-
Embryonic lethality, decreased erythropoiesis, and defective octamer-dependent promoter activation in Oct-1-deficient mice
-
[27] Wang, V.E., Schmidt, T., Chen, J., Sharp, P.A., Tantin, D., Embryonic lethality, decreased erythropoiesis, and defective octamer-dependent promoter activation in Oct-1-deficient mice. Mol. Cell. Biol. 24 (2004), 1022–1032.
-
(2004)
Mol. Cell. Biol.
, vol.24
, pp. 1022-1032
-
-
Wang, V.E.1
Schmidt, T.2
Chen, J.3
Sharp, P.A.4
Tantin, D.5
-
28
-
-
28244489613
-
The octamer binding transcription factor Oct-1 is a stress sensor
-
[28] Tantin, D., Schild-Poulter, C., Wang, V., Hache, R.J., Sharp, P.A., The octamer binding transcription factor Oct-1 is a stress sensor. Cancer Res. 65 (2005), 10750–10758.
-
(2005)
Cancer Res.
, vol.65
, pp. 10750-10758
-
-
Tantin, D.1
Schild-Poulter, C.2
Wang, V.3
Hache, R.J.4
Sharp, P.A.5
-
29
-
-
61849161672
-
Oct1 loss of function induces a coordinate metabolic shift that opposes tumorigenicity
-
[29] Shakya, A., Cooksey, R., Cox, J.E., Wang, V., McClain, D.A., Tantin, D., Oct1 loss of function induces a coordinate metabolic shift that opposes tumorigenicity. Nat. Cell Biol. 11 (2009), 320–327.
-
(2009)
Nat. Cell Biol.
, vol.11
, pp. 320-327
-
-
Shakya, A.1
Cooksey, R.2
Cox, J.E.3
Wang, V.4
McClain, D.A.5
Tantin, D.6
-
30
-
-
78650940891
-
Oct1 is a switchable, bipotential stabilizer of repressed and inducible transcriptional states
-
[30] Shakya, A., Kang, J., Chumley, J., Williams, M.A., Tantin, D., Oct1 is a switchable, bipotential stabilizer of repressed and inducible transcriptional states. J. Biol. Chem. 286 (2011), 450–459.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 450-459
-
-
Shakya, A.1
Kang, J.2
Chumley, J.3
Williams, M.A.4
Tantin, D.5
-
31
-
-
84963643413
-
Oct1 and OCA-B are selectively required for CD4 memory T cell function
-
[31] Shakya, A., Goren, A., Shalek, A., German, C.N., Snook, J., Kuchroo, V.K., Yosef, N., Chan, R.C., Regev, A., Williams, M.A., Tantin, D., Oct1 and OCA-B are selectively required for CD4 memory T cell function. J. Exp. Med. 212 (2015), 2115–2131.
-
(2015)
J. Exp. Med.
, vol.212
, pp. 2115-2131
-
-
Shakya, A.1
Goren, A.2
Shalek, A.3
German, C.N.4
Snook, J.5
Kuchroo, V.K.6
Yosef, N.7
Chan, R.C.8
Regev, A.9
Williams, M.A.10
Tantin, D.11
-
32
-
-
58849156573
-
A general mechanism for transcription regulation by Oct1 and Oct4 in response to genotoxic and oxidative stress
-
[32] Kang, J., Gemberling, M., Nakamura, M., Whitby, F.G., Handa, H., Fairbrother, W.G., Tantin, D., A general mechanism for transcription regulation by Oct1 and Oct4 in response to genotoxic and oxidative stress. Genes Dev. 23 (2009), 208–222.
-
(2009)
Genes Dev.
, vol.23
, pp. 208-222
-
-
Kang, J.1
Gemberling, M.2
Nakamura, M.3
Whitby, F.G.4
Handa, H.5
Fairbrother, W.G.6
Tantin, D.7
-
33
-
-
33750465872
-
SATB1 packages densely looped, transcriptionally active chromatin for coordinated expression of cytokine genes
-
[33] Cai, S., Lee, C.C., Kohwi-Shigematsu, T., SATB1 packages densely looped, transcriptionally active chromatin for coordinated expression of cytokine genes. Nat. Genet. 38 (2006), 1278–1288.
-
(2006)
Nat. Genet.
, vol.38
, pp. 1278-1288
-
-
Cai, S.1
Lee, C.C.2
Kohwi-Shigematsu, T.3
-
34
-
-
84875127327
-
CTCF and cohesin: linking gene regulatory elements with their targets
-
[34] Merkenschlager, M., Odom, D.T., CTCF and cohesin: linking gene regulatory elements with their targets. Cell 152 (2013), 1285–1297.
-
(2013)
Cell
, vol.152
, pp. 1285-1297
-
-
Merkenschlager, M.1
Odom, D.T.2
-
35
-
-
67549119096
-
CTCF: master weaver of the genome
-
[35] Phillips, J.E., Corces, V.G., CTCF: master weaver of the genome. Cell 137 (2009), 1194–1211.
-
(2009)
Cell
, vol.137
, pp. 1194-1211
-
-
Phillips, J.E.1
Corces, V.G.2
-
36
-
-
84890388970
-
CTCF and BORIS in genome regulation and cancer
-
[36] Marshall, A.D., Bailey, C.G., Rasko, J.E., CTCF and BORIS in genome regulation and cancer. Curr. Opin. Genet. Dev. 24 (2014), 8–15.
-
(2014)
Curr. Opin. Genet. Dev.
, vol.24
, pp. 8-15
-
-
Marshall, A.D.1
Bailey, C.G.2
Rasko, J.E.3
-
37
-
-
0029929793
-
An exceptionally conserved transcriptional repressor, CTCF, employs different combinations of zinc fingers to bind diverged promoter sequences of avian and mammalian c-myc oncogenes
-
[37] Filippova, G.N., Fagerlie, S., Klenova, E.M., Myers, C., Dehner, Y., Goodwin, G., Neiman, P.E., Collins, S.J., Lobanenkov, V.V., An exceptionally conserved transcriptional repressor, CTCF, employs different combinations of zinc fingers to bind diverged promoter sequences of avian and mammalian c-myc oncogenes. Mol. Cell. Biol. 16 (1996), 2802–2813.
-
(1996)
Mol. Cell. Biol.
, vol.16
, pp. 2802-2813
-
-
Filippova, G.N.1
Fagerlie, S.2
Klenova, E.M.3
Myers, C.4
Dehner, Y.5
Goodwin, G.6
Neiman, P.E.7
Collins, S.J.8
Lobanenkov, V.V.9
-
38
-
-
0034655584
-
Transcriptional repression by the insulator protein CTCF involves histone deacetylases
-
[38] Lutz, M., Burke, L.J., Barreto, G., Goeman, F., Greb, H., Arnold, R., Schultheiss, H., Brehm, A., Kouzarides, T., Lobanenkov, V., Renkawitz, R., Transcriptional repression by the insulator protein CTCF involves histone deacetylases. Nucleic Acids Res. 28 (2000), 1707–1713.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 1707-1713
-
-
Lutz, M.1
Burke, L.J.2
Barreto, G.3
Goeman, F.4
Greb, H.5
Arnold, R.6
Schultheiss, H.7
Brehm, A.8
Kouzarides, T.9
Lobanenkov, V.10
Renkawitz, R.11
-
39
-
-
38549161074
-
CTCFBSDB: a CTCF-binding site database for characterization of vertebrate genomic insulators
-
[39] Bao, L., Zhou, M., Cui, Y., CTCFBSDB: a CTCF-binding site database for characterization of vertebrate genomic insulators. Nucleic Acids Res. 36 (2008), D83–D87.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. D83-D87
-
-
Bao, L.1
Zhou, M.2
Cui, Y.3
-
40
-
-
60149095014
-
Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains
-
[40] Cuddapah, S., Jothi, R., Schones, D.E., Roh, T.Y., Cui, K., Zhao, K., Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains. Genome Res. 19 (2009), 24–32.
-
(2009)
Genome Res.
, vol.19
, pp. 24-32
-
-
Cuddapah, S.1
Jothi, R.2
Schones, D.E.3
Roh, T.Y.4
Cui, K.5
Zhao, K.6
-
41
-
-
73349127026
-
Cohesin: its roles and mechanisms
-
[41] Nasmyth, K., Haering, C.H., Cohesin: its roles and mechanisms. Annu. Rev. Genet. 43 (2009), 525–558.
-
(2009)
Annu. Rev. Genet.
, vol.43
, pp. 525-558
-
-
Nasmyth, K.1
Haering, C.H.2
-
42
-
-
3543018516
-
Interaction between differentially methylated regions partitions the imprinted genes Igf2 and H19 into parent-specific chromatin loops
-
[42] Murrell, A., Heeson, S., Reik, W., Interaction between differentially methylated regions partitions the imprinted genes Igf2 and H19 into parent-specific chromatin loops. Nat. Genet. 36 (2004), 889–893.
-
(2004)
Nat. Genet.
, vol.36
, pp. 889-893
-
-
Murrell, A.1
Heeson, S.2
Reik, W.3
-
43
-
-
84859160178
-
Cohesin, CTCF and lymphocyte antigen receptor locus rearrangement
-
[43] Seitan, V.C., Krangel, M.S., Merkenschlager, M., Cohesin, CTCF and lymphocyte antigen receptor locus rearrangement. Trends Immunol. 33 (2012), 153–159.
-
(2012)
Trends Immunol.
, vol.33
, pp. 153-159
-
-
Seitan, V.C.1
Krangel, M.S.2
Merkenschlager, M.3
-
44
-
-
0037008674
-
A dyad Oct-binding sequence functions as a maintenance sequence for the unmethylated state within the H19/Igf2-imprinted control region
-
[44] Hori, N., Nakano, H., Takeuchi, T., Kato, H., Hamaguchi, S., Oshimura, M., Sato, K., A dyad Oct-binding sequence functions as a maintenance sequence for the unmethylated state within the H19/Igf2-imprinted control region. J. Biol. Chem. 277 (2002), 27960–27967.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 27960-27967
-
-
Hori, N.1
Nakano, H.2
Takeuchi, T.3
Kato, H.4
Hamaguchi, S.5
Oshimura, M.6
Sato, K.7
-
45
-
-
77950523023
-
Analysis of the IGF2/H19 imprinting control region uncovers new genetic defects, including mutations of OCT-binding sequences, in patients with 11p15 fetal growth disorders
-
[45] Demars, J., Shmela, M.E., Rossignol, S., Okabe, J., Netchine, I., Azzi, S., Cabrol, S., Le Caignec, C., David, A., Le Bouc, Y., El-Osta, A., Gicquel, C., Analysis of the IGF2/H19 imprinting control region uncovers new genetic defects, including mutations of OCT-binding sequences, in patients with 11p15 fetal growth disorders. Hum. Mol. Genet. 19 (2010), 803–814.
-
(2010)
Hum. Mol. Genet.
, vol.19
, pp. 803-814
-
-
Demars, J.1
Shmela, M.E.2
Rossignol, S.3
Okabe, J.4
Netchine, I.5
Azzi, S.6
Cabrol, S.7
Le Caignec, C.8
David, A.9
Le Bouc, Y.10
El-Osta, A.11
Gicquel, C.12
-
46
-
-
84855812755
-
Beckwith-Wiedemann syndrome caused by maternally inherited mutation of an OCT-binding motif in the IGF2/H19-imprinting control region, ICR1
-
[46] Poole, R.L., Leith, D.J., Docherty, L.E., Shmela, M.E., Gicquel, C., Splitt, M., Temple, I.K., Mackay, D.J., Beckwith-Wiedemann syndrome caused by maternally inherited mutation of an OCT-binding motif in the IGF2/H19-imprinting control region, ICR1. Eur. J. Hum. Genet. 20 (2012), 240–243.
-
(2012)
Eur. J. Hum. Genet.
, vol.20
, pp. 240-243
-
-
Poole, R.L.1
Leith, D.J.2
Docherty, L.E.3
Shmela, M.E.4
Gicquel, C.5
Splitt, M.6
Temple, I.K.7
Mackay, D.J.8
-
47
-
-
45149084413
-
Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions
-
[47] Guelen, L., Pagie, L., Brasset, E., Meuleman, W., Faza, M.B., Talhout, W., Eussen, B.H., de Klein, A., Wessels, L., de Laat, W., van Steensel, B., Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions. Nature 453 (2008), 948–951.
-
(2008)
Nature
, vol.453
, pp. 948-951
-
-
Guelen, L.1
Pagie, L.2
Brasset, E.3
Meuleman, W.4
Faza, M.B.5
Talhout, W.6
Eussen, B.H.7
de Klein, A.8
Wessels, L.9
de Laat, W.10
van Steensel, B.11
-
48
-
-
43149091675
-
The integrity of a lamin-B1-dependent nucleoskeleton is a fundamental determinant of RNA synthesis in human cells
-
[48] Tang, C.W., Maya-Mendoza, A., Martin, C., Zeng, K., Chen, S., Feret, D., Wilson, S.A., Jackson, D.A., The integrity of a lamin-B1-dependent nucleoskeleton is a fundamental determinant of RNA synthesis in human cells. J. Cell Sci. 121 (2008), 1014–1024.
-
(2008)
J. Cell Sci.
, vol.121
, pp. 1014-1024
-
-
Tang, C.W.1
Maya-Mendoza, A.2
Martin, C.3
Zeng, K.4
Chen, S.5
Feret, D.6
Wilson, S.A.7
Jackson, D.A.8
-
49
-
-
0842310349
-
CTCF tethers an insulator to subnuclear sites, suggesting shared insulator mechanisms across species
-
[49] Yusufzai, T.M., Tagami, H., Nakatani, Y., Felsenfeld, G., CTCF tethers an insulator to subnuclear sites, suggesting shared insulator mechanisms across species. Mol. Cell 13 (2004), 291–298.
-
(2004)
Mol. Cell
, vol.13
, pp. 291-298
-
-
Yusufzai, T.M.1
Tagami, H.2
Nakatani, Y.3
Felsenfeld, G.4
-
50
-
-
67650076211
-
The pluripotency factor Oct4 interacts with Ctcf and also controls X-chromosome pairing and counting
-
[50] Donohoe, M.E., Silva, S.S., Pinter, S.F., Xu, N., Lee, J.T., The pluripotency factor Oct4 interacts with Ctcf and also controls X-chromosome pairing and counting. Nature 460 (2009), 128–132.
-
(2009)
Nature
, vol.460
, pp. 128-132
-
-
Donohoe, M.E.1
Silva, S.S.2
Pinter, S.F.3
Xu, N.4
Lee, J.T.5
-
51
-
-
65349131389
-
The nuclear envelope—a scaffold for silencing?
-
[51] Towbin, B.D., Meister, P., Gasser, S.M., The nuclear envelope—a scaffold for silencing?. Curr. Opin. Genet. Dev. 19 (2009), 180–186.
-
(2009)
Curr. Opin. Genet. Dev.
, vol.19
, pp. 180-186
-
-
Towbin, B.D.1
Meister, P.2
Gasser, S.M.3
-
52
-
-
77951616674
-
The nuclear envelope in genome organization, expression and stability
-
[52] Mekhail, K., Moazed, D., The nuclear envelope in genome organization, expression and stability. Nat. Rev. Mol. Cell Biol. 11 (2010), 317–328.
-
(2010)
Nat. Rev. Mol. Cell Biol.
, vol.11
, pp. 317-328
-
-
Mekhail, K.1
Moazed, D.2
-
53
-
-
25144515509
-
Nuclear envelope, nuclear lamina, and inherited disease
-
[53] Worman, H.J., Courvalin, J.C., Nuclear envelope, nuclear lamina, and inherited disease. Int. Rev. Cytol. 246 (2005), 231–279.
-
(2005)
Int. Rev. Cytol.
, vol.246
, pp. 231-279
-
-
Worman, H.J.1
Courvalin, J.C.2
-
54
-
-
59849092583
-
Lamin B1 controls oxidative stress responses via Oct-1
-
[54] Malhas, A.N., Lee, C.F., Vaux, D.J., Lamin B1 controls oxidative stress responses via Oct-1. J. Cell Biol. 184 (2009), 45–55.
-
(2009)
J. Cell Biol.
, vol.184
, pp. 45-55
-
-
Malhas, A.N.1
Lee, C.F.2
Vaux, D.J.3
-
55
-
-
0029953723
-
A soluble transcription factor, Oct-1, is also found in the insoluble nuclear matrix and possesses silencing activity in its alanine-rich domain
-
[55] Kim, M.K., Lesoon-Wood, L.A., Weintraub, B.D., Chung, J.H., A soluble transcription factor, Oct-1, is also found in the insoluble nuclear matrix and possesses silencing activity in its alanine-rich domain. Mol. Cell. Biol. 16 (1996), 4366–4377.
-
(1996)
Mol. Cell. Biol.
, vol.16
, pp. 4366-4377
-
-
Kim, M.K.1
Lesoon-Wood, L.A.2
Weintraub, B.D.3
Chung, J.H.4
-
56
-
-
0030681031
-
Dissociation of Oct-1 from the nuclear peripheral structure induces the cellular aging-associated collagenase gene expression
-
[56] Imai, S., Nishibayashi, S., Takao, K., Tomifuji, M., Fujino, T., Hasegawa, M., Takano, T., Dissociation of Oct-1 from the nuclear peripheral structure induces the cellular aging-associated collagenase gene expression. Mol. Biol. Cell 8 (1997), 2407–2419.
-
(1997)
Mol. Biol. Cell
, vol.8
, pp. 2407-2419
-
-
Imai, S.1
Nishibayashi, S.2
Takao, K.3
Tomifuji, M.4
Fujino, T.5
Hasegawa, M.6
Takano, T.7
-
57
-
-
0028269562
-
Coordinate regulation of multiple human lymphokine genes by Oct-1 and potentially novel 45 and 43 kDa polypeptides
-
[57] Kaushansky, K., Shoemaker, S.G., O'Rork, C.A., McCarty, J.M., Coordinate regulation of multiple human lymphokine genes by Oct-1 and potentially novel 45 and 43 kDa polypeptides. J. Immunol. 152 (1994), 1812–1820.
-
(1994)
J. Immunol.
, vol.152
, pp. 1812-1820
-
-
Kaushansky, K.1
Shoemaker, S.G.2
O'Rork, C.A.3
McCarty, J.M.4
-
58
-
-
0028034556
-
Octamer factors exert a dual effect on the IL-2 and IL-4 promoters
-
[58] Pfeuffer, I., Klein-Hessling, S., Heinfling, A., Chuvpilo, S., Escher, C., Brabletz, T., Hentsch, B., Schwarzenbach, H., Matthias, P., Serfling, E., Octamer factors exert a dual effect on the IL-2 and IL-4 promoters. J. Immunol. 153 (1994), 5572–5585.
-
(1994)
J. Immunol.
, vol.153
, pp. 5572-5585
-
-
Pfeuffer, I.1
Klein-Hessling, S.2
Heinfling, A.3
Chuvpilo, S.4
Escher, C.5
Brabletz, T.6
Hentsch, B.7
Schwarzenbach, H.8
Matthias, P.9
Serfling, E.10
-
59
-
-
33644854871
-
A specific CpG site demethylation in the human interleukin 2 gene promoter is an epigenetic memory
-
[59] Murayama, A., Sakura, K., Nakama, M., Yasuzawa-Tanaka, K., Fujita, E., Tateishi, Y., Wang, Y., Ushijima, T., Baba, T., Shibuya, K., Shibuya, A., Kawabe, Y., Yanagisawa, J., A specific CpG site demethylation in the human interleukin 2 gene promoter is an epigenetic memory. EMBO J. 25 (2006), 1081–1092.
-
(2006)
EMBO J.
, vol.25
, pp. 1081-1092
-
-
Murayama, A.1
Sakura, K.2
Nakama, M.3
Yasuzawa-Tanaka, K.4
Fujita, E.5
Tateishi, Y.6
Wang, Y.7
Ushijima, T.8
Baba, T.9
Shibuya, K.10
Shibuya, A.11
Kawabe, Y.12
Yanagisawa, J.13
-
60
-
-
0001076497
-
The large subunit of basal transcription factor SNAPc is a Myb domain protein that interacts with Oct-1
-
[60] Wong, M.W., Henry, R.W., Ma, B., Kobayashi, R., Klages, N., Matthias, P., Strubin, M., Hernandez, N., The large subunit of basal transcription factor SNAPc is a Myb domain protein that interacts with Oct-1. Mol. Cell. Biol. 18 (1998), 368–377.
-
(1998)
Mol. Cell. Biol.
, vol.18
, pp. 368-377
-
-
Wong, M.W.1
Henry, R.W.2
Ma, B.3
Kobayashi, R.4
Klages, N.5
Matthias, P.6
Strubin, M.7
Hernandez, N.8
-
61
-
-
0033569643
-
Crystal structure of an OCA-B peptide bound to an Oct-1 POU domain/octamer DNA complex: specific recognition of a protein-DNA interface
-
[61] Chasman, D., Cepek, K., Sharp, P.A., Pabo, C.O., Crystal structure of an OCA-B peptide bound to an Oct-1 POU domain/octamer DNA complex: specific recognition of a protein-DNA interface. Genes Dev. 13 (1999), 2650–2657.
-
(1999)
Genes Dev.
, vol.13
, pp. 2650-2657
-
-
Chasman, D.1
Cepek, K.2
Sharp, P.A.3
Pabo, C.O.4
-
62
-
-
0035810956
-
Expression of the Oct-1 transcription factor and characterization of its interactions with the Bob1 coactivator
-
[62] Lee, L., Stollar, E., Chang, J., Grossmann, J.G., O'Brien, R., Ladbury, J., Carpenter, B., Roberts, S., Luisi, B., Expression of the Oct-1 transcription factor and characterization of its interactions with the Bob1 coactivator. Biochemistry 40 (2001), 6580–6588.
-
(2001)
Biochemistry
, vol.40
, pp. 6580-6588
-
-
Lee, L.1
Stollar, E.2
Chang, J.3
Grossmann, J.G.4
O'Brien, R.5
Ladbury, J.6
Carpenter, B.7
Roberts, S.8
Luisi, B.9
-
63
-
-
0030816433
-
Inducible expression and phosphorylation of coactivator BOB.1/OBF.1 in T cells
-
[63] Zwilling, S., Dieckmann, A., Pfisterer, P., Angel, P., Wirth, T., Inducible expression and phosphorylation of coactivator BOB.1/OBF.1 in T cells. Science 277 (1997), 221–225.
-
(1997)
Science
, vol.277
, pp. 221-225
-
-
Zwilling, S.1
Dieckmann, A.2
Pfisterer, P.3
Angel, P.4
Wirth, T.5
-
64
-
-
84876806691
-
Dynamic regulatory network controlling TH17 cell differentiation
-
[64] Yosef, N., Shalek, A.K., Gaublomme, J.T., Jin, H., Lee, Y., Awasthi, A., Wu, C., Karwacz, K., Xiao, S., Jorgolli, M., Gennert, D., Satija, R., Shakya, A., Lu, D.Y., Trombetta, J.J., Pillai, M.R., Ratcliffe, P.J., Coleman, M.L., Bix, M., Tantin, D., Park, H., Kuchroo, V.K., Regev, A., Dynamic regulatory network controlling TH17 cell differentiation. Nature 496 (2013), 461–468.
-
(2013)
Nature
, vol.496
, pp. 461-468
-
-
Yosef, N.1
Shalek, A.K.2
Gaublomme, J.T.3
Jin, H.4
Lee, Y.5
Awasthi, A.6
Wu, C.7
Karwacz, K.8
Xiao, S.9
Jorgolli, M.10
Gennert, D.11
Satija, R.12
Shakya, A.13
Lu, D.Y.14
Trombetta, J.J.15
Pillai, M.R.16
Ratcliffe, P.J.17
Coleman, M.L.18
Bix, M.19
Tantin, D.20
Park, H.21
Kuchroo, V.K.22
Regev, A.23
more..
-
65
-
-
34447343833
-
BOB.1/OBF.1 controls the balance of TH1 and TH2 immune responses
-
[65] Brunner, C., Sindrilaru, A., Girkontaite, I., Fischer, K.D., Sunderkotter, C., Wirth, T., BOB.1/OBF.1 controls the balance of TH1 and TH2 immune responses. EMBO J. 26 (2007), 3191–3202.
-
(2007)
EMBO J.
, vol.26
, pp. 3191-3202
-
-
Brunner, C.1
Sindrilaru, A.2
Girkontaite, I.3
Fischer, K.D.4
Sunderkotter, C.5
Wirth, T.6
-
66
-
-
60549091427
-
Critical role for the transcription regulator CCCTC-binding factor in the control of Th2 cytokine expression
-
[66] Ribeiro de Almeida, C., Heath, H., Krpic, S., Dingjan, G.M., van Hamburg, J.P., Bergen, I., van de Nobelen, S., Sleutels, F., Grosveld, F., Galjart, N., Hendriks, R.W., Critical role for the transcription regulator CCCTC-binding factor in the control of Th2 cytokine expression. J. Immunol. 182 (2009), 999–1010.
-
(2009)
J. Immunol.
, vol.182
, pp. 999-1010
-
-
Ribeiro de Almeida, C.1
Heath, H.2
Krpic, S.3
Dingjan, G.M.4
van Hamburg, J.P.5
Bergen, I.6
van de Nobelen, S.7
Sleutels, F.8
Grosveld, F.9
Galjart, N.10
Hendriks, R.W.11
|