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Volumn 17, Issue 1, 2016, Pages

The beagle dog MicroRNA tissue atlas: Identifying translatable biomarkers of organ toxicity

Author keywords

[No Author keywords available]

Indexed keywords

ALANINE AMINOTRANSFERASE; ASPARTATE AMINOTRANSFERASE; BIOLOGICAL MARKER; CERULETIDE; MICRORNA; MICRORNA 122; MICRORNA 885; UNCLASSIFIED DRUG; TRANSCRIPTOME;

EID: 84982190021     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/s12864-016-2958-x     Document Type: Article
Times cited : (52)

References (61)
  • 1
    • 4644309196 scopus 로고    scopus 로고
    • The functions of animal microRNAs
    • Ambros V. The functions of animal microRNAs. Nature. 2004;431(7006):350-5.
    • (2004) Nature , vol.431 , Issue.7006 , pp. 350-355
    • Ambros, V.1
  • 4
    • 82755187564 scopus 로고    scopus 로고
    • Extracellular microRNA: a new source of biomarkers
    • Etheridge A, Lee I, Hood L, Galas D, Wang K. Extracellular microRNA: a new source of biomarkers. Mutat Res. 2011;717(1-2):85-90.
    • (2011) Mutat Res , vol.717 , Issue.1-2 , pp. 85-90
    • Etheridge, A.1    Lee, I.2    Hood, L.3    Galas, D.4    Wang, K.5
  • 8
    • 84896703318 scopus 로고    scopus 로고
    • Clinical relevance of circulating cell-free microRNAs in cancer
    • Schwarzenbach H, Nishida N, Calin GA, Pantel K. Clinical relevance of circulating cell-free microRNAs in cancer. Nat Rev Clin Oncol. 2014;11(3):145-56.
    • (2014) Nat Rev Clin Oncol , vol.11 , Issue.3 , pp. 145-156
    • Schwarzenbach, H.1    Nishida, N.2    Calin, G.A.3    Pantel, K.4
  • 13
    • 63049087072 scopus 로고    scopus 로고
    • Rapid evolution of mammalian X-linked testis microRNAs
    • Guo X, Su B, Zhou Z, Sha J. Rapid evolution of mammalian X-linked testis microRNAs. BMC Genomics. 2009;10:97.
    • (2009) BMC Genomics , vol.10 , pp. 97
    • Guo, X.1    Su, B.2    Zhou, Z.3    Sha, J.4
  • 14
    • 84873607017 scopus 로고    scopus 로고
    • Human microRNAs originated from two periods at accelerated rates in mammalian evolution
    • Iwama H, Kato K, Imachi H, Murao K, Masaki T. Human microRNAs originated from two periods at accelerated rates in mammalian evolution. Mol Biol Evol. 2013;30(3):613-26.
    • (2013) Mol Biol Evol , vol.30 , Issue.3 , pp. 613-626
    • Iwama, H.1    Kato, K.2    Imachi, H.3    Murao, K.4    Masaki, T.5
  • 15
    • 84891818318 scopus 로고    scopus 로고
    • miRBase: annotating high confidence microRNAs using deep sequencing data
    • Kozomara A, Griffiths-Jones S. miRBase: annotating high confidence microRNAs using deep sequencing data. Nucleic Acids Res. 2014;42(Database issue):D68-73.
    • (2014) Nucleic Acids Res , vol.42 , Issue.DATABASE ISSUE , pp. D68-D73
    • Kozomara, A.1    Griffiths-Jones, S.2
  • 16
    • 84881009556 scopus 로고    scopus 로고
    • Human placental microRNAs and preeclampsia
    • Chen DB, Wang W. Human placental microRNAs and preeclampsia. Biol Reprod. 2013;88(5):130.
    • (2013) Biol Reprod , vol.88 , Issue.5 , pp. 130
    • Chen, D.B.1    Wang, W.2
  • 17
    • 84899134393 scopus 로고    scopus 로고
    • Liver biomarker and in vitro assessment confirm the hepatic origin of aminotransferase elevations lacking histopathological correlate in beagle dogs treated with GABAA receptor antagonist NP260
    • Harrill AH, Eaddy JS, Rose K, Cullen JM, Ramanathan L, Wanaski S, Collins S, Ho Y, Watkins PB, Lecluyse EL. Liver biomarker and in vitro assessment confirm the hepatic origin of aminotransferase elevations lacking histopathological correlate in beagle dogs treated with GABAA receptor antagonist NP260. Toxicol Appl Pharmacol. 2014;277(2):131-7.
    • (2014) Toxicol Appl Pharmacol , vol.277 , Issue.2 , pp. 131-137
    • Harrill, A.H.1    Eaddy, J.S.2    Rose, K.3    Cullen, J.M.4    Ramanathan, L.5    Wanaski, S.6    Collins, S.7    Ho, Y.8    Watkins, P.B.9    Lecluyse, E.L.10
  • 19
    • 78649837734 scopus 로고    scopus 로고
    • Plasma microRNA-122 as a biomarker for viral-, alcohol-, and chemical-related hepatic diseases
    • Zhang Y, Jia Y, Zheng R, Guo Y, Wang Y, Guo H, Fei M, Sun S. Plasma microRNA-122 as a biomarker for viral-, alcohol-, and chemical-related hepatic diseases. Clin Chem. 2010;56(12):1830-8.
    • (2010) Clin Chem , vol.56 , Issue.12 , pp. 1830-1838
    • Zhang, Y.1    Jia, Y.2    Zheng, R.3    Guo, Y.4    Wang, Y.5    Guo, H.6    Fei, M.7    Sun, S.8
  • 21
    • 34347376692 scopus 로고    scopus 로고
    • Characterization of microRNA expression profiles in normal human tissues
    • Liang Y, Ridzon D, Wong L, Chen C. Characterization of microRNA expression profiles in normal human tissues. BMC Genomics. 2007;8:166.
    • (2007) BMC Genomics , vol.8 , pp. 166
    • Liang, Y.1    Ridzon, D.2    Wong, L.3    Chen, C.4
  • 22
    • 34347263808 scopus 로고    scopus 로고
    • Preclinical cardiovascular risk assessment in modern drug development
    • Guth BD. Preclinical cardiovascular risk assessment in modern drug development. Toxicol Sci. 2007;97(1):4-20.
    • (2007) Toxicol Sci , vol.97 , Issue.1 , pp. 4-20
    • Guth, B.D.1
  • 23
    • 84875871399 scopus 로고    scopus 로고
    • Current practices in preclinical drug development: gaps in hemostasis testing to assess risk of thromboembolic injury
    • Schultze AE, Walker DB, Turk JR, Tarrant JM, Brooks MB, Pettit SD. Current practices in preclinical drug development: gaps in hemostasis testing to assess risk of thromboembolic injury. Toxicol Pathol. 2013;41(3):445-53.
    • (2013) Toxicol Pathol , vol.41 , Issue.3 , pp. 445-453
    • Schultze, A.E.1    Walker, D.B.2    Turk, J.R.3    Tarrant, J.M.4    Brooks, M.B.5    Pettit, S.D.6
  • 26
    • 84982132856 scopus 로고
    • Controlling the false discovery rate: a practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. Ser. B Methodol. 1995;1:289-300. http://www.stat.purdue.edu/~doerge/BIOINFORM.D/FALL06/Benjamini%20and%20Y%20FDR.pdf.
    • (1995) J. R. Stat. Soc. Ser. B Methodol , vol.1 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 27
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method
    • Livak KJ, Schmittgen TD. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods. 2001;25(4):402-8.
    • (2001) Methods , vol.25 , Issue.4 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 29
    • 84896714429 scopus 로고    scopus 로고
    • Brain microRNAs and insights into biological functions and therapeutic potential of brain enriched miRNA-128
    • Adlakha YK, Saini N. Brain microRNAs and insights into biological functions and therapeutic potential of brain enriched miRNA-128. Mol Cancer. 2014;13:33.
    • (2014) Mol Cancer , vol.13 , pp. 33
    • Adlakha, Y.K.1    Saini, N.2
  • 30
    • 84924703578 scopus 로고    scopus 로고
    • Circulating miR-9* and miR-384-5p as potential indicators for trimethyltin-induced neurotoxicity
    • Ogata K, Sumida K, Miyata K, Kushida M, Kuwamura M, Yamate J. Circulating miR-9* and miR-384-5p as potential indicators for trimethyltin-induced neurotoxicity. Toxicol Pathol. 2015;43(2):198-208.
    • (2015) Toxicol Pathol , vol.43 , Issue.2 , pp. 198-208
    • Ogata, K.1    Sumida, K.2    Miyata, K.3    Kushida, M.4    Kuwamura, M.5    Yamate, J.6
  • 32
    • 84862680867 scopus 로고    scopus 로고
    • MicroRNA-449 and microRNA-34b/c function redundantly in murine testes by targeting E2F transcription factor-retinoblastoma protein (E2F-pRb) pathway
    • Bao J, Li D, Wang L, Wu J, Hu Y, Wang Z, Chen Y, Cao X, Jiang C, Yan W, et al. MicroRNA-449 and microRNA-34b/c function redundantly in murine testes by targeting E2F transcription factor-retinoblastoma protein (E2F-pRb) pathway. J Biol Chem. 2012;287(26):21686-98.
    • (2012) J Biol Chem , vol.287 , Issue.26 , pp. 21686-21698
    • Bao, J.1    Li, D.2    Wang, L.3    Wu, J.4    Hu, Y.5    Wang, Z.6    Chen, Y.7    Cao, X.8    Jiang, C.9    Yan, W.10
  • 33
    • 84906331490 scopus 로고    scopus 로고
    • Evaluation of miR-216a and miR-217 as potential biomarkers of acute pancreatic injury in rats and mice
    • Goodwin D, Rosenzweig B, Zhang J, Xu L, Stewart S, Thompson K, Rouse R. Evaluation of miR-216a and miR-217 as potential biomarkers of acute pancreatic injury in rats and mice. Biomarkers. 2014;19(6):517-29.
    • (2014) Biomarkers , vol.19 , Issue.6 , pp. 517-529
    • Goodwin, D.1    Rosenzweig, B.2    Zhang, J.3    Xu, L.4    Stewart, S.5    Thompson, K.6    Rouse, R.7
  • 34
    • 84883419512 scopus 로고    scopus 로고
    • MiR-216a and miR-216b as markers for acute phased pancreatic injury
    • Endo K, Weng H, Kito N, Fukushima Y, Iwai N. MiR-216a and miR-216b as markers for acute phased pancreatic injury. Biomed Res. 2013;34(4):179-88.
    • (2013) Biomed Res , vol.34 , Issue.4 , pp. 179-188
    • Endo, K.1    Weng, H.2    Kito, N.3    Fukushima, Y.4    Iwai, N.5
  • 35
    • 79251638583 scopus 로고    scopus 로고
    • Serum microRNA characterization identifies miR-885-5p as a potential marker for detecting liver pathologies
    • Gui J, Tian Y, Wen X, Zhang W, Zhang P, Gao J, Run W, Tian L, Jia X, Gao Y. Serum microRNA characterization identifies miR-885-5p as a potential marker for detecting liver pathologies. Clin Sci (Lond). 2011;120(5):183-93.
    • (2011) Clin Sci (Lond) , vol.120 , Issue.5 , pp. 183-193
    • Gui, J.1    Tian, Y.2    Wen, X.3    Zhang, W.4    Zhang, P.5    Gao, J.6    Run, W.7    Tian, L.8    Jia, X.9    Gao, Y.10
  • 36
    • 84865128457 scopus 로고    scopus 로고
    • Circulating microRNAs: novel biomarkers for cardiovascular diseases
    • Xu J, Zhao J, Evan G, Xiao C, Cheng Y, Xiao J. Circulating microRNAs: novel biomarkers for cardiovascular diseases. J Mol Med (Berl). 2012;90(8):865-75.
    • (2012) J Mol Med (Berl) , vol.90 , Issue.8 , pp. 865-875
    • Xu, J.1    Zhao, J.2    Evan, G.3    Xiao, C.4    Cheng, Y.5    Xiao, J.6
  • 37
    • 84879123880 scopus 로고    scopus 로고
    • The altered expression profile of microRNAs in cardiopulmonary bypass canine models and the effects of mir-499 on myocardial ischemic reperfusion injury
    • Qin H, Chen GX, Liang MY, Rong J, Yao JP, Liu H, Wu ZK. The altered expression profile of microRNAs in cardiopulmonary bypass canine models and the effects of mir-499 on myocardial ischemic reperfusion injury. J Transl Med. 2013;11(1):154.
    • (2013) J Transl Med , vol.11 , Issue.1 , pp. 154
    • Qin, H.1    Chen, G.X.2    Liang, M.Y.3    Rong, J.4    Yao, J.P.5    Liu, H.6    Wu, Z.K.7
  • 38
    • 55249117284 scopus 로고    scopus 로고
    • MicroRNA-206: the skeletal muscle-specific myomiR
    • McCarthy JJ. MicroRNA-206: the skeletal muscle-specific myomiR. Biochim Biophys Acta. 2008;1779(11):682-91.
    • (2008) Biochim Biophys Acta , vol.1779 , Issue.11 , pp. 682-691
    • McCarthy, J.J.1
  • 39
    • 84922380984 scopus 로고    scopus 로고
    • MiR-206, a key modulator of skeletal muscle development and disease
    • Ma G, Wang Y, Li Y, Cui L, Zhao Y, Zhao B, Li K. MiR-206, a key modulator of skeletal muscle development and disease. Int J Biol Sci. 2015;11(3):345-52.
    • (2015) Int J Biol Sci , vol.11 , Issue.3 , pp. 345-352
    • Ma, G.1    Wang, Y.2    Li, Y.3    Cui, L.4    Zhao, Y.5    Zhao, B.6    Li, K.7
  • 43
    • 51349111360 scopus 로고    scopus 로고
    • Identification of suitable endogenous control genes for microRNA gene expression analysis in human breast cancer
    • Davoren PA, McNeill RE, Lowery AJ, Kerin MJ, Miller N. Identification of suitable endogenous control genes for microRNA gene expression analysis in human breast cancer. BMC Mol Biol. 2008;9:76.
    • (2008) BMC Mol Biol , vol.9 , pp. 76
    • Davoren, P.A.1    McNeill, R.E.2    Lowery, A.J.3    Kerin, M.J.4    Miller, N.5
  • 44
    • 77951587943 scopus 로고    scopus 로고
    • MicroRNA expression profiling to identify and validate reference genes for relative quantification in colorectal cancer
    • Chang KH, Mestdagh P, Vandesompele J, Kerin MJ, Miller N. MicroRNA expression profiling to identify and validate reference genes for relative quantification in colorectal cancer. BMC Cancer. 2010;10:173.
    • (2010) BMC Cancer , vol.10 , pp. 173
    • Chang, K.H.1    Mestdagh, P.2    Vandesompele, J.3    Kerin, M.J.4    Miller, N.5
  • 45
    • 78649785019 scopus 로고    scopus 로고
    • Suitable reference genes for relative quantification of miRNA expression in prostate cancer
    • Schaefer A, Jung M, Miller K, Lein M, Kristiansen G, Erbersdobler A, Jung K. Suitable reference genes for relative quantification of miRNA expression in prostate cancer. Exp Mol Med. 2010;42(11):749-58.
    • (2010) Exp Mol Med , vol.42 , Issue.11 , pp. 749-758
    • Schaefer, A.1    Jung, M.2    Miller, K.3    Lein, M.4    Kristiansen, G.5    Erbersdobler, A.6    Jung, K.7
  • 48
    • 84896698163 scopus 로고    scopus 로고
    • Screening plasma miRNAs as biomarkers for renal ischemia-reperfusion injury in rats
    • Wang JF, Zha YF, Li HW, Wang F, Bian Q, Lai XL, Yu G. Screening plasma miRNAs as biomarkers for renal ischemia-reperfusion injury in rats. Med Sci Monit. 2014;20:283-9.
    • (2014) Med Sci Monit , vol.20 , pp. 283-289
    • Wang, J.F.1    Zha, Y.F.2    Li, H.W.3    Wang, F.4    Bian, Q.5    Lai, X.L.6    Yu, G.7
  • 49
    • 84890904166 scopus 로고    scopus 로고
    • MicroRNA-22 is a master regulator of bone morphogenetic protein-7/6 homeostasis in the kidney
    • Long J, Badal SS, Wang Y, Chang BH, Rodriguez A, Danesh FR. MicroRNA-22 is a master regulator of bone morphogenetic protein-7/6 homeostasis in the kidney. J Biol Chem. 2013;288(51):36202-14.
    • (2013) J Biol Chem , vol.288 , Issue.51 , pp. 36202-36214
    • Long, J.1    Badal, S.S.2    Wang, Y.3    Chang, B.H.4    Rodriguez, A.5    Danesh, F.R.6
  • 50
    • 84906851450 scopus 로고    scopus 로고
    • Circulating microRNAs as potential biomarkers for nephrotic syndrome
    • Sui W, Lin H, Li H, Yan Q, Chen J, Dai Y. Circulating microRNAs as potential biomarkers for nephrotic syndrome. Iran J Kidney Dis. 2014;8(5):371-6.
    • (2014) Iran J Kidney Dis , vol.8 , Issue.5 , pp. 371-376
    • Sui, W.1    Lin, H.2    Li, H.3    Yan, Q.4    Chen, J.5    Dai, Y.6
  • 52
    • 84902301134 scopus 로고    scopus 로고
    • Identification of tubular injury microRNA biomarkers in urine: comparison of next-generation sequencing and qPCR-based profiling platforms
    • Nassirpour R, Mathur S, Gosink MM, Li Y, Shoieb AM, Wood J, O'Neil SP, Homer BL, Whiteley LO. Identification of tubular injury microRNA biomarkers in urine: comparison of next-generation sequencing and qPCR-based profiling platforms. BMC Genomics. 2014;15:485.
    • (2014) BMC Genomics , vol.15 , pp. 485
    • Nassirpour, R.1    Mathur, S.2    Gosink, M.M.3    Li, Y.4    Shoieb, A.M.5    Wood, J.6    O'Neil, S.P.7    Homer, B.L.8    Whiteley, L.O.9
  • 53
    • 84908260835 scopus 로고    scopus 로고
    • Identification of urinary miRNA biomarkers for detecting cisplatin-induced proximal tubular injury in rats
    • Kanki M, Moriguchi A, Sasaki D, Mitori H, Yamada A, Unami A, Miyamae Y. Identification of urinary miRNA biomarkers for detecting cisplatin-induced proximal tubular injury in rats. Toxicology. 2014;324:158-68.
    • (2014) Toxicology , vol.324 , pp. 158-168
    • Kanki, M.1    Moriguchi, A.2    Sasaki, D.3    Mitori, H.4    Yamada, A.5    Unami, A.6    Miyamae, Y.7
  • 54
    • 78149407836 scopus 로고    scopus 로고
    • Normalization strategies for microRNA profiling experiments: a 'normal' way to a hidden layer of complexity?
    • Meyer SU, Pfaffl MW, Ulbrich SE. Normalization strategies for microRNA profiling experiments: a 'normal' way to a hidden layer of complexity? Biotechnol Lett. 2010;32(12):1777-88.
    • (2010) Biotechnol Lett , vol.32 , Issue.12 , pp. 1777-1788
    • Meyer, S.U.1    Pfaffl, M.W.2    Ulbrich, S.E.3
  • 55
    • 30344456035 scopus 로고    scopus 로고
    • Facile means for quantifying microRNA expression by real-time PCR
    • Shi R, Chiang VL. Facile means for quantifying microRNA expression by real-time PCR. Biotechniques. 2005;39(4):519-25.
    • (2005) Biotechniques , vol.39 , Issue.4 , pp. 519-525
    • Shi, R.1    Chiang, V.L.2
  • 61
    • 84881027019 scopus 로고    scopus 로고
    • Mechanistic biomarkers provide early and sensitive detection of acetaminophen-induced acute liver injury at first presentation to hospital
    • Antoine DJ, Dear JW, Lewis PS, Platt V, Coyle J, Masson M, Thanacoody RH, Gray AJ, Webb DJ, Moggs JG, et al. Mechanistic biomarkers provide early and sensitive detection of acetaminophen-induced acute liver injury at first presentation to hospital. Hepatology. 2013;58(2):777-87.
    • (2013) Hepatology , vol.58 , Issue.2 , pp. 777-787
    • Antoine, D.J.1    Dear, J.W.2    Lewis, P.S.3    Platt, V.4    Coyle, J.5    Masson, M.6    Thanacoody, R.H.7    Gray, A.J.8    Webb, D.J.9    Moggs, J.G.10


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.