Group A rotavirus in Brazilian bats: description of novel T15 and H15 genotypes

Archives of Virology

Volumn 161, Issue 11, 2016, Pages 3225-3230

  Asano, Karen Miyuki ^a,b   Gregori, Fabio ^b   Hora, Aline Santana ^b   Scheffer, Karin Corrêa ^a   Fahl, Willian Oliveira ^a   Iamamoto, Keila ^a   Mori, Enio ^a   Silva, Fernanda Dornelas Florentino ^b   Taniwaki, Sueli Akemi ^b   Brandão, Paulo Eduardo ^b  

^a Instituto Pasteur de Sao Paulo   (Brazil)

^b UNIVERSITY OF SÃO PAULO   (Brazil)

Author keywords

Bats; Genotype constellation; Rotavirus

Indexed keywords

VIRAL PROTEIN; VIRUS RNA;

ANIMAL; BAT; BRAZIL; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; FEMALE; GENETICS; GENOTYPE; ISOLATION AND PURIFICATION; MALE; MOLECULAR EPIDEMIOLOGY; PHYLOGENY; ROTAVIRUS; ROTAVIRUS INFECTION; SEQUENCE HOMOLOGY; VETERINARY; VIROLOGY;

ANIMALS; BRAZIL; CHIROPTERA; CLUSTER ANALYSIS; FEMALE; GENOTYPE; MALE; MOLECULAR EPIDEMIOLOGY; PHYLOGENY; RNA, VIRAL; ROTAVIRUS; ROTAVIRUS INFECTIONS; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY; VIRAL PROTEINS;

EID: 84982106616     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-016-3010-9     Document Type: Article

References (45)

1. Tate JE, Burton AH, Boschi-Pinto C et al (2012) 2008 estimate of worldwide rotavirus-associated mortality in children younger than 5 years before the introduction of universal rotavirus vaccination programmes: a systematic review and meta-analysis. Lancet Infect Dis 12:136–141
2. Matthijnssens J, Otto PH, Ciarlet M et al (2012) VP6-sequence-based cutoff values as a criterion for rotavirus species demarcation. Arch Virol 157:1177–1182
3. Mihalov-Kovács E, Gellért A, Marton S et al (2015) Candidate new rotavirus species in sheltered dogs, Hungary. Emerg Infect Dis 21:660–663
4. Estes MK, Kapikian AZ (2007) Rotaviruses. In: Knipe DM, Howley PM (eds) Fields virology, 5th edn. Williams and Wilkins, Philadelphia, pp 1917–1975
5. Matthijnssens J, Ciarlet M, Rahman M et al (2008) Recommendations for the classification of group A rotaviruses using all 11 genomic RBA segments. Arch Virol 153:1621–1629
6. Rotavirus Classification Workgroup (RCWG) (2016) Newly assigned genotypes—Update April 20 2016. https://rega.kuleuven.be/cev/viralmetagenomics/virus-classification. Accessed 06 June 2016
7. De Grazia S, Martella V, Giammanco GM et al (2007) Canine-origin G3P[3] rotavirus strain in child with acute gastroenteritis. Emerg Infect Dis 13:1091–1093
8. Grant L, Esona M, Gentsch J et al (2011) Detection of G3P[3] and G3P[9] rotavirus strains in American Indian children with evidence of gene reassortment between human and animal rotaviruses. J Med Virol 83:1288–1299
9. Matthijnssens J, Rahman M, Martella V et al (2006) Full genomic analysis of human rotavirus strain B4106 and lapine rotavirus strain 30/96 provides evidence for interspecies transmission. J Virol 80:3801–3810
10. Esona MD, Mijatovic-Rustempasic S, Conrardy C et al (2010) Reassortant group A rotavirus from straw-colored fruit bat (Eidolon helvum). Emerg Infect Dis 16:1844–1852
11. He B, Yang F, Yang W et al (2013) Characterization of a novel G3P[3] rotavirus isolated from a lesser horseshoe bat: a distant relative of feline/canine rotaviruses. J Virol 87:12357–12366
12. Xia L, Fan Q, He B et al (2014) The complete genome sequence of a G3P[10] Chinese bat rotavirus suggests multiple bat rotavirus inter-host species transmission events. Infect Genet Evol 28:1–4
13. Dacheux L, Cervantes-Gonzalez M, Guigon G et al (2014) A preliminary study of viral metagenomics of French bat species in contact with humans: identification of new mammalian viruses. PloS One 9:e87194
14. Kim HK, Yoon SW, Kim DJ et al (2016) Detection of severe acute respiratory syndrome-like, middle east respiratory syndrome-like bat coronaviruses and group H rotavirus in faeces of Korean bats. Transbound Emerg Dis. doi:10.1111/tbed.12515
15. Luchs A, Timenetsky MCS (2014) G8P[6] rotaviruses isolated from Amerindian children in Mato Grosso do Sul, Brazil, during 2009: close relationship of the G and P genes with those of bovine and bat strains. J Gen Virol 95:627–641
16. Salem ANB, Chupin SA, Bjadovskaya OP et al (2010) Multiplex nested RT-PCR for the detection of porcine enteric viruses. J Virol Methods 165:283–293
17. Gentsch JR, Glass RI, Woods P et al (1992) Identification of group A rotavirus gene 4 types by polymerase chain reaction. J Clin Microbiol 30:1365–1373
18. Gouvea V, Santos N, Timenetsky MC (1994) Identification of bovine and porcine rotavirus G types by PCR. J Clin Microbiol 32:1338–1340
19. Tonietti PO, Hora AS, Silva FD et al (2013) Phylogenetic analyses of the VP4 and VP7 genes of porcine group A rotaviruses in Sao Paulo State, Brazil: first identification of G5P[23] in piglets. J Clin Microbiol 51:2750–2753
20. Silva FDF, Tonietti PO, Espinoza LRL et al (2014) Development of primers for sequencing the NSP1, NSP3, and VP6 genes of the group A porcine rotavirus. Semina: Ciências Agrárias 35:901–904
21. Lee CN, Wang YL, Kao CL et al (2000) NSP4 gene analysis of rotaviruses recovered from infected children with and without diarrhea. J Clin Microbiol 38:4471–4477
22. Hall TA (1999) Bioedit: a user-friedly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95–98
23. Maes P, Matthijnssens J, Rahman M et al (2009) RotaC: a web-based tool for the complete genome classification of group A rotaviruses. BMC Microbiol 9:238
24. Tamura K, Stecher G, Peterson D et al (2013) MEGA6: Molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–2729
25. Kale PL, Andreozzi VL, Nobre FF (2004) Time series analysis of deaths due to diarrhoea in children in Rio de Janeiro, Brazil, 1980–1998. J Health Popul Nutr 22:27–33
26. Fabian ME, Gregorin R (2007) Família Molossidae. In: Reis NR, Peracchi AL, Pedro WA, Lima IP (eds) Morcegos do Brasil. Universidade Estadual de Londrina, Londrina, pp 149–164
27. Pacheco SM, Sodré M, Gama AR et al (2010) Morcegos urbanos: status do conhecimento e plano de ação para a conservação no Brasil. Chiroptera Neotropical 16:629–647
28. Matthijnssens J, De Grazia S, Piessens J et al (2011) Multiple reassortment and interspecies transmission events contribute to the diversity of feline, canine and feline/canine-like human group A rotavirus strains. Infect Genet Evol 11:1396–1406
29. Matthijnssens J, Taraporewala ZF, Yang H et al (2010) Simian rotaviruses possess divergent gene constellations that originated from interspecies transmission and reassortment. J Virol 84:2013–2026
30. Miño S, Matthijnssens J, Badaracco A (2013) Equine G3P[3] rotavirus strain E3198 related to simian RRV and feline/canine-like rotaviruses based on complete genome analyses. Vet Microbiol 161:239–246
31. Aboudy Y, Shif I, Zilberstein I et al (1988) Use of polyclonal and monoclonal antibodies and analysis of viral RNA in the detection of unusual group A human rotaviruses. J Med Virol 25:351–359
32. Khamrin P, Maneekarn N, Peerakome S et al (2006) Molecular characterization of a rare G3P[3] human rotavirus reassortant strain reveals evidence for multiple human-animal interspecies transmissions. J Med Virol 78:986–994
33. Banerjee I, Iturriza-Gomara M, Rajendran P et al (2007) Molecular characterization of G11P[25] and G3P[3] human rotavirus strains associated with asymptomatic infection in South India. J Med Virol 79:1768–1774
34. Wu FT, Bányai K, Lin JS et al (2012) Putative canine origin of rotavirus strain detected in a child with diarrhea. Taiwan. Vector Borne Zoonotic Dis 12:170–173
35. Timenetsky MC, Santos N, Gouvea V (1994) Survey of rotavirus G and P types associated with human gastroenteritis in São Paulo, Brazil, from 1986 to 1992. J Clin Microbiol 32:2622–2624
36. Luchs A, Cilli A, Morillo SG et al (2012) Rare G3P[3] rotavirus strain detected in Brazil: possible human-canine interspecies transmission. J Clin Virol 54:89–92
37. Aragão GC, Mascarenhas JDP, Kaiano JHL et al (2013) Norovirus diversity in diarrheic children from an African-descendant settlement in Belém. Northern Brazil. PLoS One 8:e56608
38. Simmons NB (2005) Order Chiroptera. In: Wilson DE, Reeder DM (eds) Mammals species of the world: a taxonomic and geographic reference, 3rd edn. Johns Hopkins University Press, Baltimore, pp 2125–3529
39. Bredt A, Uieda W, Pinto PP (2002) Visitas de morcegos fitófagos a Muntingia calabura L. (Muntingiaceae), em Brasília, Centro Oeste do Brasil. Revista de Zoociências 4:111–122
40. Solberg OD, Hasing ME, Trueba G et al (2009) Characterization of novel VP7, VP4, and VP6 genotypes of a previously untypeable group A rotavirus. Virology 385:58–67
41. Martin D, Ouldali M, Ménétrey J et al (2011) Structural organisation of the Rotavirus nonstructural protein NSP5. J Mol Biol 413:209–221
42. Parra GI, Espinola EE (2006) Nucleotide mismatches between the VP7 gene and the primer are associated with genotyping failure of a specific lineage from G1 rotavirus strains. Viro J 3:35
43. Taylor LH, Latham SM, Woolhouse ME (2001) Risk factors for human disease emergence. Philos Trans R Soc Lond B Biol Sci 356:983–989
44. Wang LF, Walker PJ, Poon LL (2011) Mass extinctions, biodiversity and mitochondrial function: are bats ‘special’ as reservoirs for emerging viruses? Curr Opin Virol 1:649–657
45. Wong S, Lau S, Woo P et al (2007) Bats as a continuing source of emerging infections in humans. Rev Med Virol 17:67–91