Norovirus Diversity in Diarrheic Children from an African-Descendant Settlement in Belém, Northern Brazil

PLoS ONE

Volumn 8, Issue 2, 2013, Pages

  Aragão, Glicélia Cruz ^a   Mascarenhas, Joana D'Arc Pereira ^b   Kaiano, Jane Haruko Lima ^c   de Lucena, Maria Silvia Sousa ^b   Siqueira, Jones Anderson Monteiro ^c   Fumian, Túlio Machado ^b   Hernandez, Juliana das Mercês ^b   de Oliveira, Consuelo Silva ^b   Oliveira, Darleise de Souza ^b   Araújo, Eliete da Cunha ^c   Soares, Luana da Silva ^b   Linhares, Alexandre Costa ^b   Gabbay, Yvone Benchimol ^b  

^a UNIVERSIDADE DO ESTADO DO PARÁ   (Brazil)

^b INSTITUTO EVANDRO CHAGAS   (Brazil)

^c FEDERAL UNIVERSITY OF PARÁ   (Brazil)

Author keywords

[No Author keywords available]

Indexed keywords

POLYMERASE; UNCLASSIFIED DRUG; VIRUS ENZYME;

ACUTE GASTROENTERITIS; AFRICAN; AMINO ACID SEQUENCE; ARTICLE; ASTROVIRUS; BRAZIL; CHILD; CONTROLLED STUDY; ENZYME IMMUNOASSAY; ETHNIC GROUP; FECES ANALYSIS; FREQUENCY ANALYSIS; GENETIC VARIABILITY; GENOTYPE; HUMAN; INFANT; INFECTIOUS DIARRHEA; MAJOR CLINICAL STUDY; MICROBIAL DIVERSITY; MOLECULAR BIOLOGY; MORBIDITY; NONHUMAN; NOROVIRUS; NOROVIRUS INFECTION; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PROTEIN TARGETING; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SAPOVIRUS; VIRAL GASTROENTERITIS; VIRAL GENETICS; VIRUS CAPSID; VIRUS CHARACTERIZATION; VIRUS DETECTION; VIRUS STRAIN;

AFRICAN CONTINENTAL ANCESTRY GROUP; ANIMALS; BRAZIL; CHILD; DIARRHEA; DOGS; FECES; GASTROENTERITIS; GENETIC VARIATION; HUMANS; MAMASTROVIRUS; NOROVIRUS; SAPOVIRUS;

EID: 84874083004     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0056608     Document Type: Article

References (53)

1. Black RE, Cousens S, Johnson HL, Lawn JE, Rudan I, et al. (2010) Global, regional, and national causes of child mortality in 2008: a systematic analysis. Lancet 375: 1969-1987.
2. Wardlaw T, Salama P, Brocklehurst C, Chopra M, Mason E, (2010) Diarrhoea: why children are still dying and what can be done. Lancet 375: 870-872.
3. Levidiotou S, Gartzonika C, Papaventsis D, Christaki C, Priavali E, et al. (2009) Viral agents of acute gastroenteritis in hospitalized children in Greece. Clin Microbiol Infect 15: 596-598.
4. Glass RI, Bresee B, Jiang J, Gentsch T, Ando R, et al. (2001) Gastroenteritis viruses: an overview. Novartis Found Symp 238: 5-25.
5. Vernacchio L, Vezina RM, Mitchell AA, Lesko SM, Plaut AG, et al. (2006) Diarrhea in American infants and young children in the community setting: incidence, clinical presentation and microbiology. Pediatr Infect Dis J 25: 2-7.
6. Blanton LH, Adams SM, Beard RS, Wei G, Bulens SN, et al. (2006) Molecular and epidemiologic trends of caliciviruses associated with outbreaks of acute gastroenteritis in the United States, 2000-2004. J Infect Dis 193: 413-421.
7. Svraka S, Duizer E, Vennema H, Bruin E, Van der Veer B, et al. (2007) Etiological role of viruses in outbreaks of acute gastroenteritis in the Netherlands from 1994 through 2005. J Clin Microbiol 45: 1389-1394.
8. Bruggink L, Sameer R, Marshall J, (2010) Molecular and epidemiological characteristics of norovirus associated with community-based sporadic gastroenteritis incidents and norovirus outbreaks in Victoria, Australia, 2002-2007. Intervirol 53: 167-72.
9. Karst SM, (2010) Pathogenesis of noroviruses, emerging RNA viruses. Viruses 2: 748-781.
10. Aragão GC, Oliveira DS, Santos MC, Mascarenhas JDP, Oliveira CS, et al. (2010) Molecular characterization of norovirus, sapovirus and astrovirus in children with acute gastroenteritis from Belém, Pará, Brazil. Rev Pan-Amaz Saúde 1: 149-158.
11. Gonzalez-Galan V, Sánchez-Fauqier A, Obando I, Montero V, Fernandez M, et al. (2011) High prevalence of community-acquired norovirus gastroenteritis among hospitalized children: a prospective study. Clin Microbiol Infect 17: 1895-1899.
12. Lopman BA, Hall AJ, Curns AT, Parashar UD, (2011) Increasing rates of gastroenteritis hospital discharges in US adults and the contribution of norovirus, 1996-2007. Clin Infect Dis 52: 466-474.
13. Wiegering V, Kaiser J, Tappe D, Weissbrich B, Morbach H, et al. (2011) Gastroenteritis in childhood: a retrospective study of 650 hospitalized pediatric patients. Int J Infect Dis 15: 401-407.
14. Zheng DP, Ando T, Fankhauser RL, Beard RS, Monroe SS, (2006) Norovirus classification and proposed strain nomenclature. Virol 346: 312-323.
15. Green KY (2007) Caliciviridae: the noroviruses. In: Knipe DM, Howley PM, editors. Fields Virology. Philadelphia: Lippincott Williams & Wilkins. pp. 949-978.
16. Siebenga JJ, Vennema H, Zheng DP, Vinjé J, Lee BE, et al. (2009) Norovirus illness is a global problem: emergence and spread of Norovirus GII.4 Variants, 2001-2007. J Infect Dis 200: 802-812.
17. Donaldson EF, Lindesmith LC, Lobue AD, Baric RS, (2010) Viral shape-shifting: norovirus evasion of the human immune system. Nat Rev Microbiol 8: 231-241.
18. Zheng DP, Widdowson MA, Glass RI, Vinjé J, (2010) Molecular epidemiology of genogroup II-genotype 4 noroviruses in the United States between 1994 and 2006. J Clin Microbiol 48: 168-177.
19. Lysén M, Thorhagen M, Brytting M, Hjertgvist M, Anderson Y, et al. (2009) Genetic diversity among food-borne and waterborne norovirus strains causing outbreaks in Sweden. J Clin Microbiol 47: 2411-2418.
20. Bae JY, Lee JS, Shin MH, Lee SH, Hwang IG, (2011) Effect of wash treatments on reducing human norovirus on iceberg lettuce and perilla leaf. J Food Prot 74: 1908-1911.
21. Silva JAN, (2007) Condições Sanitárias e de Saúde em Caiana dos Crioulos, uma Comunidade Quilombola do Estado da Paraíba. Saúde Soc 16: 111-124.
22. Siqueira JAM, Linhares AC, Oliveira DS, Lucena MSS, Wanzeller AL, et al. (2011) Evaluation of third-generation RIDASCREEN enzyme immunoassay for the detection of norovirus antigens in stool samples of hospitalized children in Belém, Pará, Brazil. Diagn Microbiol Infect Dis 71: 391-395.
23. Boom R, Sol CJ, Salimans MM, Jansen CL, Wertheim-Van Dillen PM, et al. (1990) Rapid and simple method for purification of nucleic acids. J Clin Microbiol 28: 495-503.
24. Jiang X, Huang PW, Zhong WM, Farkas T, Cubitt DW, et al. (1999) Design and evaluation of a primer pair that detects both Norwalk and Sapporo-like caliciviruses by RT-PCR. J Virol Methods 83: 145-154.
25. Anderson AD, Garret VB, Sobel J, Monroe SS, Fankhauser RL, et al. (2001) Multistate outbreak of Norwalk-like virus gastroenteritis associated with a common caterer. Am J Epidemiol 154: 1013-1019.
26. Noel JS, Lee TW, Kurtz JB, Glass RI, Monroe SS, (1995) Typing of human astroviruses from clinical isolates by enzyme immunoassay and nucleotide sequencing. J Clin Microbiol 33: 797-801.
27. Vinjé J, Hamidjaja RA, Sobsey MD, (2004) Development and application of a capsid VP1 (region D) based reverse transcription PCR assay for genotyping of genogroup I and II noroviruses. J Virol Met 116: 109-117.
28. Felsenstein J (1995) PHYLIP (Phylogeny Inference Package) Version 3.57c. Available: http://www.med.nyu.edu/rcr/rcr/phylip/main.html#refs. Accessed: 5 Nov 2012.
29. Tamura K, Petreson D, Peterson N, Stecher G, Nei M, et al. (2011) MEGA5: Molecular evolutionary genetics analysis using maximum likehood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2736-2739.
30. Kroneman A, Vennema H, Deforche K, Avoort HV, Peñaranda S, et al. (2011) An automated genotyping tool for enteroviruses and noroviruses. J Clin Virol 51: 121-125.
31. Ayres M, Ayres Júnior M, Ayres DL, Santos AAS (2007) BioEstat 5.0: Aplicações estatísticas nas áreas das ciências biológicas e médicas. Belém-PA: Mamirauá Press. 364 p.
32. Kayano JHL, Aragão GC, Moura A, Araujo EC, Rodrigues IRC, et al. (2010) Ocorrência de rotavírus e parasitas intestinais em crianças com diarreia aguda na Comunidade Quilombola do Abacatal, Ananindeua, Pará. In: XVI Congresso Brasileiro de Infectologia Pediátrica.
33. Vicentini F, Gomes YM, Barreira DM, Costa MS, Denadai W, et al. (2011) Molecular characterization of noroviruses from children in the "quilombola" communities in the north of Espirito Santo State, Brazil. In: XXII National Meeting of Virology and VI Mercosur Meeting of Virology. Virus Reviews & Research 16: 159-159.
34. Gabbay YB, Glass RI, Monroe SS, Carcamo C, Estes MK, et al. (1994) Prevalence of antibodies to Norwalk Virus among Ameridians in isoleted Amazonia Communities. Am J Epidemiol 139: 728-733.
35. Pang XL, Preiksaitis JK, Wong S, Li V, Lee BE, (2010) Influence of novel norovirus GII.4 variants on gastroenteritis outbreak dynamics in Alberta and the Northern Territories, Canada between 2000 and 2008. PloS One 5: e11599.
36. Siebenga JJ, Lemey P, Pond S, Rambout A, Vennema H, et al. (2010) Phylodynamic reconstruction reveals norovirus GII.4 epidemic expansions and their molecular determinants. PLoS Pathog 6: e1000884.
37. Ferreira MSR, Xavier MPTP, Fumian TM, Victoria M, Oliveira SA, et al. (2008) Acute gastroenteritis cases associated with Noroviruses infection in the state of Rio de Janeiro. J Med Virol 80: 338-344.
38. Mathijs E, Denayer S, Palmeira L, Botteldoorn N, Scipioni A, et al. (2011) Novel norovirus recombinants and of GII.4 sub-lineages associated with outbreaks between 2006 and 2010 in Belgium. Virol J 810.1186/1743-422X-8-310.
39. Zeng M, Xu X, Zhu C, Chen J, Zhu Q, et al. (2012) Clinical and Molecular Epidemiology of Norovirus Infection in Childhood Diarrhea in China. J Med Virol 84: 145-151.
40. Fioretti JM, Ferreira MSR, Victoria M, Vieira CB, Xavier MPTP, et al. (2011) Genetic diversity of noroviruses in Brazil. Mem Inst Oswaldo Cruz 106: 942-947.
41. Ferreira MSR, Victoria M, Carvalho-Costa FA, Vieira CB, Xavier MPTP, et al. (2010) Surveillance of Norovirus Infections in the State of Rio De Janeiro, Brazil 2005-2008. J Med Virol 82: 1442-1448.
42. Fumian TM, Aragão GC, Mascarenhas JDP, Kaiano JH, Siqueira JAM, et al. (2012) Detection of a novel recombinant strain of norovirus in an African-descendant community from the Amazon region of Brazil in 2008. Arch Virol 157: 2389-2392.
43. Eden JS, Bull RA, Tu E, McIver CJ, Lyon MJ, et al. (2010) Norovirus GII.4 variant 2006b caused epidemics of acute gastroenteritis in Australia during 2007 and 2008. J Clin Virol 49: 265-271.
44. Zhou X, Li X, Sun L, Mo Y, Chen S, et al. (2012) Epidemiological and molecular analysis of a waterborne outbreak of norovirus GII.4. Epidemiol Infect 8: 1-8.
45. Vega E, Barclay L, Gregoricus N, Williams K, Lee D, et al. (2011) Novel Surveillance Network for Norovirus Gastroenteritis Outbreaks, United States. Emerg Infect Dis 17: 1389-1395.
46. Barreira DM, Ferreira MS, Fumian TM, Checon R, Sadovsky AD, et al. (2010) Viral load and genotypes of noroviruses in symptomatic and asymptomatic children in southeastern Brazil. J Clin Virol 47: 60-64.
47. Chan-It W, Thongprachum A, Okitsu S, Nishimura S, Kikuta H, et al. (2011) Detection and genetic characterization of norovirus infections in children with acute gastroenteritis in Japan, 2007-2009. Clin Lab 57: 213-220.
48. Nataraju SM, Pativada M, Chatterjee D, Nayak MK, Ganesh B, et al. (2011) Molecular epidemiology of norovirus infections in children and adults: sequence analysis of region C indicates genetic diversity of NVGII strains in Kolkata, India. Epidemiol Infect 139: 910-918.
49. Zeng M, Gong Z, Zhang Y, Zhu Q, Wang X, (2011) Prevalence and genetic diversity of norovirus in outpatient children with acute diarrhea in Shanghai, China. Jpn J Infect Dis 64: 417-422.
50. Nakamura LS, Oliveira DS, Silva PF, Lucena MS, Mascarenhas JDP, et al. (2006) Molecular characterization of calicivirus in feces of children with acute diarrhea, attending a public hospital, in Belém, Pará. In: XVII National Meeting of Virology. Virus Reviews & Research 11: 95-95.
51. Siqueira JAM, Nascimento IS, Oliveira DS, Soares LS, Aragão GC, et al. (2010) Caracterização molecular de calicivírus humano em amostras fecais de crianças atendidas em um posto de saúde de Belém, Pará entre os anos de 1998 e 2000. In: 62a Reunião Anual da Sociedade Brasileira para o Progresso da Ciência.
52. Xavier MPTP, Oliveira SA, Ferreira MSR, Victoria M, Miranda V, et al. (2009) Detection of caliciviruses associated with acute infantile gastroenteritis in Salvador, an urban center in Northeast Brazil. Braz J Med Biol Res 42: 438-444.
53. Gabbay YB, Leite JPG, Oliveira DS, Nakamura LS, Nunes MRT, et al. (2007) Molecular epidemiology of astrovirus type 1 in Belém, Brazil, as an agent of infantile gastroenteritis, over a period of 18 years (1982-2000): Identification of two possible new lineages. Virus Res 129: 166-174.