Development of primers for sequencing the NSP1, NSP3, and VP6 genes of the group A porcine rotavirus

Semina:Ciencias Agrarias

Volumn 35, Issue 2, 2014, Pages 901-904

  Silva, Fernanda Dornelas Florentino ^a   De Oliveira Tonietti, Paloma ^a   Espinoza, Luis Ramiro Luna ^a   Brandão, Paulo Eduardo ^a   Richtzenhain, Leonardo José ^a   Gregori, Fabio ^a  

^a UNIVERSITY OF SÃO PAULO   (Brazil)

Author keywords

Diarrhea; Group A rotaviruses; PCR; Sequencing; Swine

Indexed keywords

EID: 84901421526     PISSN: 1676546X     EISSN: 16790359     Source Type: Journal    
DOI: 10.5433/1679-0359.2014v35n2p901     Document Type: Article

References (14)

1. CHUNG K. T.; McCRAE M. A. Regulation of gene expression by the NSP1 and NSP3 non-structural proteins of rotavirus. Archives of Virology Berlin v. 156 n. 12 p. 2197-2203 2011.
2. DENNEHY P. H. Rotavirus vaccines: an overview. Clinical Microbiology Reviews Washington v. 21 n. 1 p.198-208 2008.
3. ESTES M. K.; KAPIKIAN A. Z. Rotaviruses. In: FIELDS B. N.; KNIPE P. M.; HOWLEY P. M. Field's virology. 5. ed. Filadelfia: Lippincott Williams & Wilkins 2007. p. 1917-1973.
4. GREGORI F.; BRANDAO P. E.; JEREZ J. A. Diversidade intra-genotipica de amostras de rotavirus suinas circulantes no Estado de Sao Paulo Brasil. Ars Veterinaria Jaboticabal v. 28 n. 1 p. 28-35 2012.
5. HALL T. A. Bioedit: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/nt. Nucleic Acids Symposium Series Oxford n. 41 p. 95-98 1999.
6. KAPIKIAN A. Z.; HOSHINO Y.; CHANOCK R. M. Rotaviruses. In: KNIPE D. M.; HOWLEY P. M.; GRIFFIN D. E.; LAMB R. A.; MARTIN M. A.; ROIZMAN B.; STRAIS S. E. Fields virology. 4. ed. Philadelphia: Lipincott William and Wilkins 2001. p. 1787-1833.
7. LARKIN M. A.; BLACKSHIELDS B.; BROWN N. P.; CHENNA R.; Mc GETTIGAN P. A.; Mc WILLIAN H.; VALENTIN F.; WALLACE I. M.; WILM A.; LOPEZ R.; THOMPSON J. D.; GIBSON T. J.; HIGGINS D. G. Clustal W and Clustal X version 2.0. Bioinformatics Oxford v. 23 n. 21 p. 2947-48 2007.
8. MARTELLA V.; BANYAI K.; MATTHIJNSSENS J.; BUONAVOGLIA C.; CIARLET M. C. Zoonotic aspects of rotaviruses. Veterinary Microbiology Barcelona v. 140 n. 3 p. 246-255 2010.
9. Mathijnsens J.; CIARLET M.; Mc DONALD S. M.; ATTOUI H.; BANYAI K.; BRISTER J. R.; BUESA J.; ESONA M. D.; ESTES M. K.; GENTSCH J. R.; ITURRIZA-GOMARA M.; JOHNE R.; KIRKWOOD C. D.; MARTELLA V.; MERTENS P. P. C.; NAKAGOMI O.; PARRENO V.; RAHMAN M.; RUGGERI F. M.; SAIF L. J.; SANTOS N.; STEYER A.; TANIGUCHI K.; PATTON J. T.; DESSELBERGER U.; RANST M. V. Recommendations for the classification of group A rotaviruses using all 11 genomic RNA segments. Archives of Virology Berlin v. 153 n. 8 p. 1621-1629 2008.
10. Mathijnsens J.; CIARLET M.; RAHMAN M.; ATTOUI H.; BANYAI K.; ESTES M. K.; GENTSCH J. R.; ITURRIZA-GOMARA M.; KIRKWOOD C. D.; MARTELLA V.; MERTENS P. P. C.; NAKAGOMI O.; PATTON J. T.; RUGGERI F. M.; SAIF L. J.; SANTOS N.; STEYER A.; TANIGUCHI K.; DESSELBERGER U.; RANST M. V. Uniformity of rotavirus strain nomenclature proposed by the rotavirus classification working Group (RCWG). Archives of Virology Berlin v. 156 n. 8 p. 1397-1413 2011.
11. PARRA G. I.; BOK K.; MART INEZ M.; GOMEZ J. A. Evidence of rotavirus intragenic recombination between two sublineages of the same genotype. Journal of General Virology Great Britain v. 85 n. 6 p. 1713- 1716 2004.
12. RODRIGUEZ C. A. R.; BRANDAO P. E.; FERREIRA F.; GREGORI F.; BUZINARO M. G.; JEREZ J.A. Improved animal rotavirus isolation in MA104 cells using different trypsin concentrations. Arquivos do Instituto Biologico Sao Paulo v. 71 n. 4 p. 437-441 2004.
13. SHEN S.; BURKE B.; DESSELBERGER U. Rearrangement of the VP6 gene of a group A rotavirus in combination with a point mutation affecting trimer stability. Journal of Virology Washington v. 68 n. 3 p. 1682-1688 1994.
14. TANIGUCHI K.; URASAWA S. Diversity in rotavirus genomes. Seminars in Virology London v. 6 n. 2 p. 123-131 1995.