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Volumn 7, Issue JUN, 2016, Pages

Sterol synthesis in diverse bacteria

Author keywords

Biomarkers; Lipid biosynthesis; Methanotrophs; Myxobacteria; Oxidosqualene cyclase; Planctomycetes; Squalene epoxidase; Sterols

Indexed keywords

24 DEHYDROCHOLESTEROL REDUCTASE; 3 KETO STEROL REDUCTASE; C 24(28) STEROL REDUCTASE; C3 STEROL DEHYDROGENASE; C4 METHYL STEROL OXIDASE; CYCLOARTENOL; LANOSTEROL SYNTHASE; SQUALENE MONOOXYGENASE; STEROL 14ALPHA DEMETHYLASE; STEROL DERIVATIVE; UNCLASSIFIED DRUG;

EID: 84980328084     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2016.00990     Document Type: Article
Times cited : (113)

References (71)
  • 1
    • 33751427434 scopus 로고    scopus 로고
    • Site-directed mutagenesis of conserved aromatic residues in rat squalene epoxidase
    • Abe, I., Abe, T., Lou, W., Masuoka, T., and Noguchi, H. (2007). Site-directed mutagenesis of conserved aromatic residues in rat squalene epoxidase. Biochem. Biophys. Res. Commun. 352, 259-263. doi: 10.1016/j.bbrc.2006.11.014
    • (2007) Biochem. Biophys. Res. Commun , vol.352 , pp. 259-263
    • Abe, I.1    Abe, T.2    Lou, W.3    Masuoka, T.4    Noguchi, H.5
  • 2
    • 55849146271 scopus 로고    scopus 로고
    • Eudoraea adriatica gen. nov., sp. nov., a novel marine bacterium of the family Flavobacteriaceae
    • Alain, K., Intertaglia, L., Catala, P., and Lebaron, P. (2008). Eudoraea adriatica gen. nov., sp. nov., a novel marine bacterium of the family Flavobacteriaceae. Int. J. Syst. Evol. Microbiol. 58, 2275-2281. doi: 10.1099/ijs.0.65446-0
    • (2008) Int. J. Syst. Evol. Microbiol , vol.58 , pp. 2275-2281
    • Alain, K.1    Intertaglia, L.2    Catala, P.3    Lebaron, P.4
  • 3
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J. H., Zhang, Z., Miller, W., et al. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402. doi: 10.1093/nar/25.17.3389
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.H.4    Zhang, Z.5    Miller, W.6
  • 4
    • 84946600436 scopus 로고    scopus 로고
    • A distinct pathway for tetrahymanol synthesis in bacteria
    • Banta, A. B., Wei, J. H., and Welander, P. V. (2015). A distinct pathway for tetrahymanol synthesis in bacteria. Proc. Natl. Acad. Sci. U.S.A. 112, 13478-13483. doi: 10.1073/pnas.1511482112
    • (2015) Proc. Natl. Acad. Sci. U.S.A , vol.112 , pp. 13478-13483
    • Banta, A.B.1    Wei, J.H.2    Welander, P.V.3
  • 5
    • 0030033387 scopus 로고    scopus 로고
    • Cloning and characterization of ERG25, the Saccharomyces cerevisiae gene encoding C-4 sterol methyl oxidase
    • Bard, M., Bruner, D. A., Pierson, C. A., Lees, N. D., Biermann, B., Frye, L., et al. (1996). Cloning and characterization of ERG25, the Saccharomyces cerevisiae gene encoding C-4 sterol methyl oxidase. Proc. Natl. Acad. Sci. U.S.A. 93, 186-190. doi: 10.1073/pnas.93.1.186
    • (1996) Proc. Natl. Acad. Sci. U.S.A , vol.93 , pp. 186-190
    • Bard, M.1    Bruner, D.A.2    Pierson, C.A.3    Lees, N.D.4    Biermann, B.5    Frye, L.6
  • 6
    • 0015228748 scopus 로고
    • Steroids and squalene in Methylococcus capsulatus grown on methane
    • Bird, C. W., Lynch, J. M., Pirt, F. J., and Reid, W. W. (1971). Steroids and squalene in Methylococcus capsulatus grown on methane. Nature 230, 473-474. doi: 10.1038/230473a0
    • (1971) Nature , vol.230 , pp. 473-474
    • Bird, C.W.1    Lynch, J.M.2    Pirt, F.J.3    Reid, W.W.4
  • 7
    • 77956859476 scopus 로고
    • 'Cholesterol: evolution of structure and function, '
    • eds D. E. Vance and J. Vance (Amsterdam: Elsevier)
    • Bloch, K. (1991). "Cholesterol: evolution of structure and function, "in Biochemistry of Lipids, Lipoproteins, and Membranes, eds D. E. Vance and J. Vance (Amsterdam: Elsevier), 363-381.
    • (1991) Biochemistry of Lipids, Lipoproteins, and Membranes , pp. 363-381
    • Bloch, K.1
  • 8
    • 33745116909 scopus 로고    scopus 로고
    • Biosynthesis of hopanoids by sulfate-reducing bacteria (genus Desulfovibrio)
    • Blumenberg, M., Kruger, M., Nauhaus, K., Talbot, H. M., Oppermann, B. I., Seifert, R., et al. (2006). Biosynthesis of hopanoids by sulfate-reducing bacteria (genus Desulfovibrio). Environ. Microbiol. 8, 1220-1227. doi: 10.1111/j.1462-2920.2006.01014.x
    • (2006) Environ. Microbiol , vol.8 , pp. 1220-1227
    • Blumenberg, M.1    Kruger, M.2    Nauhaus, K.3    Talbot, H.M.4    Oppermann, B.I.5    Seifert, R.6
  • 9
    • 0037238414 scopus 로고    scopus 로고
    • Steroid biosynthesis in prokaryotes: identification of myxobacterial steroids and cloning of the first bacterial 2, 3(S)-oxidosqualene cyclase from the myxobacterium Stigmatella aurantiaca
    • Bode, H. B., Zeggel, B., Silakowski, B., Wenzel, S. C., Reichenbach, H., and Muller, R. (2003). Steroid biosynthesis in prokaryotes: identification of myxobacterial steroids and cloning of the first bacterial 2, 3(S)-oxidosqualene cyclase from the myxobacterium Stigmatella aurantiaca. Mol. Microbiol. 47, 471-481. doi: 10.1046/j.1365-2958.2003.03309.x
    • (2003) Mol. Microbiol , vol.47 , pp. 471-481
    • Bode, H.B.1    Zeggel, B.2    Silakowski, B.3    Wenzel, S.C.4    Reichenbach, H.5    Muller, R.6
  • 10
    • 0017101565 scopus 로고
    • δ8(14)-steroids in the bacterium Methylococcus capsulatus
    • Bouvier, P., Rohmer, M., Benveniste, P., and Ourisson, G. (1976). δ8(14)-steroids in the bacterium Methylococcus capsulatus. Biochem. J. 159, 267-271. doi: 10.1042/bj1590267
    • (1976) Biochem. J , vol.159 , pp. 267-271
    • Bouvier, P.1    Rohmer, M.2    Benveniste, P.3    Ourisson, G.4
  • 11
    • 84930749492 scopus 로고    scopus 로고
    • 'The family Methylococcaceae, '
    • eds E. Rosenberg, E. F. Delong, S. Lory, E. Stackenbrandt, and F. Thompson (Berlin: Springer-Verlag)
    • Bowman, J. P. (2014). "The family Methylococcaceae, "in The Prokaryotes: Gammaproteobacteria, eds E. Rosenberg, E. F. Delong, S. Lory, E. Stackenbrandt, and F. Thompson (Berlin: Springer-Verlag), 411-440.
    • (2014) The Prokaryotes: Gammaproteobacteria , pp. 411-440
    • Bowman, J.P.1
  • 12
    • 0027374969 scopus 로고
    • Revised taxonomy of the methanotrophs: description of Methylobacter gen. nov., emendation of Methylococcus, validation of Methylosinus and Methylocystis species, and a proposal that the family Methylococcaceae includes only the group I methanotrophs
    • Bowman, J. P., Sly, L. I., Nichols, P. D., and Hayward, A. C. (1993). Revised taxonomy of the methanotrophs: description of Methylobacter gen. nov., emendation of Methylococcus, validation of Methylosinus and Methylocystis species, and a proposal that the family Methylococcaceae includes only the group I methanotrophs. Int. J. Syst. Bacteriol. 43, 735-753. doi: 10.1099/00207713-43-4-735
    • (1993) Int. J. Syst. Bacteriol , vol.43 , pp. 735-753
    • Bowman, J.P.1    Sly, L.I.2    Nichols, P.D.3    Hayward, A.C.4
  • 13
    • 27144475394 scopus 로고    scopus 로고
    • Biomarker evidence for green and purple sulphur bacteria in a stratified Palaeoproterozoic sea
    • Brocks, J. J., Love, G. D., Summons, R. E., Knoll, A. H., Logan, G. A., and Bowden, S. A. (2005). Biomarker evidence for green and purple sulphur bacteria in a stratified Palaeoproterozoic sea. Nature 437, 866-870. doi: 10.1038/nature04068
    • (2005) Nature , vol.437 , pp. 866-870
    • Brocks, J.J.1    Love, G.D.2    Summons, R.E.3    Knoll, A.H.4    Logan, G.A.5    Bowden, S.A.6
  • 14
    • 24944522320 scopus 로고    scopus 로고
    • Transcriptional regulation of phagocytosis-induced membrane biogenesis by sterol regulatory element binding proteins
    • Castoreno, A. B., Wang, Y., Stockinger, W., Jarzylo, L. A., Du, H., Pagnon, J. C., et al. (2005). Transcriptional regulation of phagocytosis-induced membrane biogenesis by sterol regulatory element binding proteins. Proc. Natl. Acad. Sci. U.S.A. 102, 13129-13134. doi: 10.1073/pnas.0506716102
    • (2005) Proc. Natl. Acad. Sci. U.S.A , vol.102 , pp. 13129-13134
    • Castoreno, A.B.1    Wang, Y.2    Stockinger, W.3    Jarzylo, L.A.4    Du, H.5    Pagnon, J.C.6
  • 15
    • 77949881304 scopus 로고    scopus 로고
    • Phylogenomics of sterol synthesis: insights into the origin, evolution, and diversity of a key eukaryotic feature
    • Desmond, E., and Gribaldo, S. (2009). Phylogenomics of sterol synthesis: insights into the origin, evolution, and diversity of a key eukaryotic feature. Genome. Biol. Evol. 2009, 364-381. doi: 10.1093/gbe/evp036
    • (2009) Genome. Biol. Evol , vol.2009 , pp. 364-381
    • Desmond, E.1    Gribaldo, S.2
  • 16
    • 0029994476 scopus 로고    scopus 로고
    • Transcriptional regulation of a sterol-biosynthetic enzyme by sterol levels in Saccharomyces cerevisiae
    • Dimster-Denk, D., and Rine, J. (1996). Transcriptional regulation of a sterol-biosynthetic enzyme by sterol levels in Saccharomyces cerevisiae. Mol. Cell Biol. 16, 3981-3989. doi: 10.1128/MCB.16.8.3981
    • (1996) Mol. Cell Biol , vol.16 , pp. 3981-3989
    • Dimster-Denk, D.1    Rine, J.2
  • 17
    • 84855492367 scopus 로고    scopus 로고
    • Complex microbiome underlying secondary and primary metabolism in the tunicate-Prochloron symbiosis
    • Donia, M. S., Fricke, W. F., Partensky, F., Cox, J., Elshahawi, S. I., White, J. R., et al. (2011). Complex microbiome underlying secondary and primary metabolism in the tunicate-Prochloron symbiosis. Proc. Natl. Acad. Sci. U.S.A. 108, E1423-E1432. doi: 10.1073/pnas.1111712108
    • (2011) Proc. Natl. Acad. Sci. U.S.A , vol.108 , pp. E1423-E1432
    • Donia, M.S.1    Fricke, W.F.2    Partensky, F.3    Cox, J.4    Elshahawi, S.I.5    White, J.R.6
  • 18
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar, R. C. (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32, 1792-1797. doi: 10.1093/nar/gkh340
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 19
    • 33847209619 scopus 로고    scopus 로고
    • Hypotheses for the origin and early evolution of triterpenoid cyclases
    • Fischer, W. W., and Pearson, A. (2007). Hypotheses for the origin and early evolution of triterpenoid cyclases. Geobiology 5, 19-34. doi: 10.1111/j.1472-4669.2007.00096.x
    • (2007) Geobiology , vol.5 , pp. 19-34
    • Fischer, W.W.1    Pearson, A.2
  • 20
    • 65349154505 scopus 로고    scopus 로고
    • Phylogenetic analysis of the triterpene cyclase protein family in prokaryotes and eukaryotes suggests bidirectional lateral gene transfer
    • Frickey, T., and Kannenberg, E. (2009). Phylogenetic analysis of the triterpene cyclase protein family in prokaryotes and eukaryotes suggests bidirectional lateral gene transfer. Environ. Microbiol. 11, 1224-1241. doi: 10.1111/j.1462-2920.2008.01851.x
    • (2009) Environ. Microbiol , vol.11 , pp. 1224-1241
    • Frickey, T.1    Kannenberg, E.2
  • 21
    • 0032506001 scopus 로고    scopus 로고
    • Characterization of the Saccharomyces cerevisiae ERG26 gene encoding the C-3 sterol dehydrogenase (C-4 decarboxylase) involved in sterol biosynthesis
    • Gachotte, D., Barbuch, R., Gaylor, J., Nickel, E., and Bard, M. (1998). Characterization of the Saccharomyces cerevisiae ERG26 gene encoding the C-3 sterol dehydrogenase (C-4 decarboxylase) involved in sterol biosynthesis. Proc. Natl. Acad. Sci. U.S.A. 95, 13794-13799. doi: 10.1073/pnas.95.23.13794
    • (1998) Proc. Natl. Acad. Sci. U.S.A , vol.95 , pp. 13794-13799
    • Gachotte, D.1    Barbuch, R.2    Gaylor, J.3    Nickel, E.4    Bard, M.5
  • 22
    • 0033607267 scopus 로고    scopus 로고
    • Characterization of the Saccharomyces cerevisiae ERG27 gene encoding the 3-keto reductase involved in C-4 sterol demethylation
    • Gachotte, D., Sen, S. E., Eckstein, J., Barbuch, R., Krieger, M., Ray, B. D., et al. (1999). Characterization of the Saccharomyces cerevisiae ERG27 gene encoding the 3-keto reductase involved in C-4 sterol demethylation. Proc. Natl. Acad. Sci. U.S.A. 96, 12655-12660. doi: 10.1073/pnas.96.22.12655
    • (1999) Proc. Natl. Acad. Sci. U.S.A , vol.96 , pp. 12655-12660
    • Gachotte, D.1    Sen, S.E.2    Eckstein, J.3    Barbuch, R.4    Krieger, M.5    Ray, B.D.6
  • 23
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon, S., and Gascuel, O. (2003). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52, 696-704. doi: 10.1080/10635150390235520
    • (2003) Syst. Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 24
    • 84987723273 scopus 로고    scopus 로고
    • Draft genomes of gammaproteobacterial methanotrophs isolated from terrestrial ecosystems
    • Hamilton, R., Kits, K. D., Ramonovskaya, V. A., Rozova, O. N., Yurimoto, H., Iguchi, H., et al. (2015). Draft genomes of gammaproteobacterial methanotrophs isolated from terrestrial ecosystems. Genome Announc. 3:e00515-15. doi: 10.1128/genomeA.00515-15
    • (2015) Genome Announc , vol.3
    • Hamilton, R.1    Kits, K.D.2    Ramonovskaya, V.A.3    Rozova, O.N.4    Yurimoto, H.5    Iguchi, H.6
  • 25
    • 0032080517 scopus 로고    scopus 로고
    • Plant sterols and the membrane environment
    • Hartmann, M. A. (1998). Plant sterols and the membrane environment. Trends Plant Sci. 3, 170-175. doi: 10.1016/S1360-1385(98)01233-3
    • (1998) Trends Plant Sci , vol.3 , pp. 170-175
    • Hartmann, M.A.1
  • 26
    • 12844254527 scopus 로고    scopus 로고
    • Occurrence of hopanoid lipids in anaerobic Geobacter species
    • Hartner, T., Straub, K. L., and Kannenberg, E. (2005). Occurrence of hopanoid lipids in anaerobic Geobacter species. FEMS Microbiol. Lett. 243, 59-64. doi: 10.1016/j.femsle.2004.11.039
    • (2005) FEMS Microbiol. Lett , vol.243 , pp. 59-64
    • Hartner, T.1    Straub, K.L.2    Kannenberg, E.3
  • 28
    • 84864004325 scopus 로고    scopus 로고
    • Complete genome sequence of the fruiting myxobacterium Corallococcus coralloides DSM 2259
    • Huntley, S., Zhang, Y., Treuner-Lange, A., Kneip, S., Sensen, C. W., and Sogaard-Andersen, L. (2012). Complete genome sequence of the fruiting myxobacterium Corallococcus coralloides DSM 2259. J. Bacteriol. 194, 3012-3013. doi: 10.1128/JB.00397-12
    • (2012) J. Bacteriol , vol.194 , pp. 3012-3013
    • Huntley, S.1    Zhang, Y.2    Treuner-Lange, A.3    Kneip, S.4    Sensen, C.W.5    Sogaard-Andersen, L.6
  • 29
    • 0037216056 scopus 로고    scopus 로고
    • Plesiocystis pacifica gen. nov., sp. nov., a marine myxobacterium that contains dihydrogenated menaquinone, isolated from the Pacific coasts of Japan
    • Iizuka, T., Jojima, Y., Fudou, R., Hiraishi, A., Ahn, J. W., and Yamanaka, S. (2003a). Plesiocystis pacifica gen. nov., sp. nov., a marine myxobacterium that contains dihydrogenated menaquinone, isolated from the Pacific coasts of Japan. Int. J. Syst. Evol. Microbiol. 53, 189-195. doi: 10.1099/ijs.0.02418-0
    • (2003) Int. J. Syst. Evol. Microbiol , vol.53 , pp. 189-195
    • Iizuka, T.1    Jojima, Y.2    Fudou, R.3    Hiraishi, A.4    Ahn, J.W.5    Yamanaka, S.6
  • 30
    • 0038005026 scopus 로고    scopus 로고
    • Enhygromyxa salina gen. nov., sp. nov., a slightly halophilic myxobacterium isolated from the coastal areas of Japan
    • Iizuka, T., Jojima, Y., Fudou, R., Tokura, M., Hiraishi, A., and Yamanaka, S. (2003b). Enhygromyxa salina gen. nov., sp. nov., a slightly halophilic myxobacterium isolated from the coastal areas of Japan. Syst. Appl. Microbiol. 26, 189-196. doi: 10.1078/072320203322346038
    • (2003) Syst. Appl. Microbiol , vol.26 , pp. 189-196
    • Iizuka, T.1    Jojima, Y.2    Fudou, R.3    Tokura, M.4    Hiraishi, A.5    Yamanaka, S.6
  • 31
    • 0034894280 scopus 로고    scopus 로고
    • Taxonomic characterization of new alkaliphilic and alkalitolerant methanotrophs from soda lakes of the Southeastern Transbaikal region and description of Methylomicrobium buryatense sp.nov
    • Kaluzhnaya, M., Khmelenina, V., Eshinimaev, B., Suzina, N., Nikitin, D., Solonin, A., et al. (2001). Taxonomic characterization of new alkaliphilic and alkalitolerant methanotrophs from soda lakes of the Southeastern Transbaikal region and description of Methylomicrobium buryatense sp.nov. Syst. Appl. Microbiol. 24, 166-176. doi: 10.1078/0723-2020-00028
    • (2001) Syst. Appl. Microbiol , vol.24 , pp. 166-176
    • Kaluzhnaya, M.1    Khmelenina, V.2    Eshinimaev, B.3    Suzina, N.4    Nikitin, D.5    Solonin, A.6
  • 32
    • 44449131579 scopus 로고    scopus 로고
    • Classification of halo(alkali)philic and halo(alkali)tolerant methanotrophs provisionally assigned to the genera Methylomicrobium and Methylobacter and emended description of the genus Methylomicrobium
    • Kalyuzhnaya, M. G., Khmelenina, V., Eshinimaev, B., Sorokin, D., Fuse, H., Lidstrom, M., et al. (2008). Classification of halo(alkali)philic and halo(alkali)tolerant methanotrophs provisionally assigned to the genera Methylomicrobium and Methylobacter and emended description of the genus Methylomicrobium. Int. J. Syst. Evol. Microbiol. 58, 591-596. doi: 10.1099/ijs.0.65317-0
    • (2008) Int. J. Syst. Evol. Microbiol , vol.58 , pp. 591-596
    • Kalyuzhnaya, M.G.1    Khmelenina, V.2    Eshinimaev, B.3    Sorokin, D.4    Fuse, H.5    Lidstrom, M.6
  • 33
    • 27844497932 scopus 로고    scopus 로고
    • Methylosarcina lacus sp. nov., a methanotroph from Lake Washington, Seattle, USA, and emended description of the genus Methylosarcina
    • Kalyuzhnaya, M. G., Stolyar, S. M., Auman, A. J., Lara, J. C., Lidstrom, M. E., and Chistoserdova, L. (2005). Methylosarcina lacus sp. nov., a methanotroph from Lake Washington, Seattle, USA, and emended description of the genus Methylosarcina. Int. J. Syst. Evol. Microbiol. 55, 2345-2350. doi: 10.1099/ijs.0.63405-0
    • (2005) Int. J. Syst. Evol. Microbiol , vol.55 , pp. 2345-2350
    • Kalyuzhnaya, M.G.1    Stolyar, S.M.2    Auman, A.J.3    Lara, J.C.4    Lidstrom, M.E.5    Chistoserdova, L.6
  • 34
    • 0030706133 scopus 로고    scopus 로고
    • Isolation and characterization of halotolerant alkaliphilic methanotrophic bacteria from Tuva Soda Lakes
    • Khmelenina, V. N., Kalyuzhnaya, M. G., Starostina, N. G., Suzina, N. E., and Trotsenko, Y. A. (1997). Isolation and characterization of halotolerant alkaliphilic methanotrophic bacteria from Tuva Soda Lakes. Curr. Microbiol. 35, 257-261. doi: 10.1007/s002849900249
    • (1997) Curr. Microbiol , vol.35 , pp. 257-261
    • Khmelenina, V.N.1    Kalyuzhnaya, M.G.2    Starostina, N.G.3    Suzina, N.E.4    Trotsenko, Y.A.5
  • 35
    • 84871053118 scopus 로고    scopus 로고
    • Draft genome sequence of the methane-oxidizing bacterium Methylococcus capsulatus (Texas)
    • Kleiveland, C. R., Hult, L. T., Kuczkowska, K., Jacobsen, M., Lea, T., and Pope, P. B. (2012). Draft genome sequence of the methane-oxidizing bacterium Methylococcus capsulatus (Texas). J. Bacteriol. 194, 6626. doi: 10.1128/JB.01656-12
    • (2012) J. Bacteriol , vol.194 , pp. 6626
    • Kleiveland, C.R.1    Hult, L.T.2    Kuczkowska, K.3    Jacobsen, M.4    Lea, T.5    Pope, P.B.6
  • 37
    • 33845873289 scopus 로고    scopus 로고
    • Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation
    • Letunic, I., and Bork, P. (2007). Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation. Bioinformatics 23, 127-128. doi: 10.1093/bioinformatics/btl529
    • (2007) Bioinformatics , vol.23 , pp. 127-128
    • Letunic, I.1    Bork, P.2
  • 38
    • 79960004119 scopus 로고    scopus 로고
    • Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy
    • Letunic, I., and Bork, P. (2011). Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy. Nucleic Acids Res. 39, 475-478. doi: 10.1093/nar/gkr201
    • (2011) Nucleic Acids Res , vol.39 , pp. 475-478
    • Letunic, I.1    Bork, P.2
  • 39
    • 85014768147 scopus 로고    scopus 로고
    • Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
    • [Epub ahead of print]
    • Letunic, I., and Bork, P. (2016). Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees. Nucleic Acids Res. doi: 10.1093/nar/gkw290. Available online at: http://nar.oxfordjournals.org/content/early/2016/04/19/nar.gkw290.full.pdf+html. [Epub ahead of print].
    • (2016) Nucleic Acids Res
    • Letunic, I.1    Bork, P.2
  • 40
    • 85016968027 scopus 로고    scopus 로고
    • 'Metagenomics for study of fungal ecology, '
    • ed. F. Martin (Hoboken, NJ: John Wiley & Sons, Inc.)
    • Lindahl, B. D., and Kuske, C. R. (2013). "Metagenomics for study of fungal ecology, "in The Ecological Genomics of Fungi, ed F. Martin (Hoboken, NJ: John Wiley & Sons, Inc.), 281-303.
    • (2013) The Ecological Genomics of Fungi , pp. 281-303
    • Lindahl, B.D.1    Kuske, C.R.2
  • 41
    • 8844253028 scopus 로고    scopus 로고
    • Oxidosqualene cyclase second-sphere residues profoundly influence the product profile
    • Lodeiro, S., Segura, M. J., Stahl, M., Schulz-Gasch, T., and Matsuda, S. P. (2004). Oxidosqualene cyclase second-sphere residues profoundly influence the product profile. Chembiochem 5, 1581-1585. doi: 10.1002/cbic.200400086
    • (2004) Chembiochem , vol.5 , pp. 1581-1585
    • Lodeiro, S.1    Segura, M.J.2    Stahl, M.3    Schulz-Gasch, T.4    Matsuda, S.P.5
  • 42
    • 59649113268 scopus 로고    scopus 로고
    • Fossil steroids record the appearance of Demospongiae during the Cryogenian period
    • Love, G. D., Grosjean, E., Stalvies, C., Fike, D. A., Grotzinger, J. P., Bradley, A. S., et al. (2009). Fossil steroids record the appearance of Demospongiae during the Cryogenian period. Nature 457, 718-721. doi: 10.1038/nature07673
    • (2009) Nature , vol.457 , pp. 718-721
    • Love, G.D.1    Grosjean, E.2    Stalvies, C.3    Fike, D.A.4    Grotzinger, J.P.5    Bradley, A.S.6
  • 43
    • 0014624031 scopus 로고
    • Studies on the taxonomy of the Myxobacterales. I. Record of Canadian isolates and survey of methods
    • McCurdy, H. D. (1969). Studies on the taxonomy of the Myxobacterales. I. Record of Canadian isolates and survey of methods. Can. J. Microbiol. 15, 1453-1461. doi: 10.1139/m69-259
    • (1969) Can. J. Microbiol , vol.15 , pp. 1453-1461
    • McCurdy, H.D.1
  • 44
    • 0034680649 scopus 로고    scopus 로고
    • Oxidosqualene cyclase residues that promote formation of cycloartenol, lanosterol, and parkeol
    • Meyer, M. M., Segura, M. J., Wilson, W. K., and Matsuda, S. P. (2000). Oxidosqualene cyclase residues that promote formation of cycloartenol, lanosterol, and parkeol. Angew. Chem. Int. Ed. Engl. 39, 4090-4092. doi: 10.1002/1521-3773(20001117)39:22<4090
    • (2000) Angew. Chem. Int. Ed. Engl , vol.39 , pp. 4090-4092
    • Meyer, M.M.1    Segura, M.J.2    Wilson, W.K.3    Matsuda, S.P.4
  • 45
    • 0037129406 scopus 로고    scopus 로고
    • Directed evolution to generate cycloartenol synthase mutants that produce lanosterol
    • Meyer, M. M., Xu, R., and Matsuda, S. P. (2002). Directed evolution to generate cycloartenol synthase mutants that produce lanosterol. Org. Lett. 4, 1395-1398. doi: 10.1021/ol0257225
    • (2002) Org. Lett , vol.4 , pp. 1395-1398
    • Meyer, M.M.1    Xu, R.2    Matsuda, S.P.3
  • 46
    • 84860765678 scopus 로고    scopus 로고
    • Sandaracinus amylolyticus gen. nov., sp. nov., a starch-degrading soil Myxobacterium, and description of Sandaracinaceae fam. nov
    • Mohr, K. I., Garcia, R. O., Gerth, K., Irschik, H., and Muller, R. (2012). Sandaracinus amylolyticus gen. nov., sp. nov., a starch-degrading soil Myxobacterium, and description of Sandaracinaceae fam. nov. Int. J. Syst. Evol. Microbiol. 62, 1191-1198. doi: 10.1099/ijs.0.033696-0
    • (2012) Int. J. Syst. Evol. Microbiol , vol.62 , pp. 1191-1198
    • Mohr, K.I.1    Garcia, R.O.2    Gerth, K.3    Irschik, H.4    Muller, R.5
  • 47
    • 80054063178 scopus 로고    scopus 로고
    • Biosynthesis of cholesterol and other sterols
    • Nes, W. D. (2011). Biosynthesis of cholesterol and other sterols. Chem. Rev. 111, 6423-6451. doi: 10.1021/cr200021m
    • (2011) Chem. Rev , vol.111 , pp. 6423-6451
    • Nes, W.D.1
  • 48
    • 26244456586 scopus 로고    scopus 로고
    • Fluviicola taffensis gen. nov., sp. nov., a novel freshwater bacterium of the family Cryomorphaceae in the phylum 'Bacteroidetes'
    • O'sullivan, L. A., Rinna, J., Humphreys, G., Weightman, A. J., and Fry, J. C. (2005). Fluviicola taffensis gen. nov., sp. nov., a novel freshwater bacterium of the family Cryomorphaceae in the phylum 'Bacteroidetes'. Int. J. Syst. Evol. Microbiol. 55, 2189-2194. doi: 10.1099/ijs.0.63736-0
    • (2005) Int. J. Syst. Evol. Microbiol , vol.55 , pp. 2189-2194
    • O'sullivan, L.A.1    Rinna, J.2    Humphreys, G.3    Weightman, A.J.4    Fry, J.C.5
  • 49
    • 0347994912 scopus 로고    scopus 로고
    • Phylogenetic and biochemical evidence for sterol synthesis in the bacterium Gemmata obscuriglobus
    • Pearson, A., Budin, M., and Brocks, J. J. (2003). Phylogenetic and biochemical evidence for sterol synthesis in the bacterium Gemmata obscuriglobus. Proc. Natl. Acad. Sci. U.S.A. 100, 15352-15357. doi: 10.1073/pnas.2536559100
    • (2003) Proc. Natl. Acad. Sci. U.S.A , vol.100 , pp. 15352-15357
    • Pearson, A.1    Budin, M.2    Brocks, J.J.3
  • 52
    • 0014727706 scopus 로고
    • Nannocystis exedens gen. nov., spec. nov., a new myxobacterium of the family Sorangiaceae
    • Reichenbach, H. (1970). Nannocystis exedens gen. nov., spec. nov., a new myxobacterium of the family Sorangiaceae. Arch. Mikrobiol. 70, 119-138. doi: 10.1007/BF00412203
    • (1970) Arch. Mikrobiol , vol.70 , pp. 119-138
    • Reichenbach, H.1
  • 53
    • 84870551950 scopus 로고    scopus 로고
    • Cholesterol and its derivatives in Sonic Hedgehog signaling and cancer
    • Riobo, N. A. (2012). Cholesterol and its derivatives in Sonic Hedgehog signaling and cancer. Curr. Opin. Pharmacol. 12, 736-741. doi: 10.1016/j.coph.2012.07.002
    • (2012) Curr. Opin. Pharmacol , vol.12 , pp. 736-741
    • Riobo, N.A.1
  • 54
    • 27844536533 scopus 로고    scopus 로고
    • Single amino acid exchanges in FAD-binding domains of squalene epoxidase of Saccharomyces cerevisiae lead to either loss of functionality or terbinafine sensitivity
    • Ruckenstuhl, C., Eidenberger, A., Lang, S., and Turnowsky, F. (2005). Single amino acid exchanges in FAD-binding domains of squalene epoxidase of Saccharomyces cerevisiae lead to either loss of functionality or terbinafine sensitivity. Biochem. Soc. Trans. 33, 1197-1201. doi: 10.1042/BST0331197
    • (2005) Biochem. Soc. Trans , vol.33 , pp. 1197-1201
    • Ruckenstuhl, C.1    Eidenberger, A.2    Lang, S.3    Turnowsky, F.4
  • 55
    • 0034607638 scopus 로고    scopus 로고
    • Sterols in a psychrophilic methanotroph, Methylosphaera hansonii
    • Schouten, S., Bowman, J. P., Rijpstra, W. I., and Sinninghe Damste, J. S. (2000). Sterols in a psychrophilic methanotroph, Methylosphaera hansonii. FEMS Microbiol. Lett. 186, 193-195. doi: 10.1111/j.1574-6968.2000.tb09103.x
    • (2000) FEMS Microbiol. Lett , vol.186 , pp. 193-195
    • Schouten, S.1    Bowman, J.P.2    Rijpstra, W.I.3    Sinninghe Damste, J.S.4
  • 56
    • 84874545495 scopus 로고    scopus 로고
    • Identification and quantification of polyfunctionalized hopanoids by high temperature gas chromatography-mass spectrometry
    • Sessions, A. L., Zhang, L. C., Welander, P. V., Doughty, D., Summons, R. E., and Newman, D. K. (2013). Identification and quantification of polyfunctionalized hopanoids by high temperature gas chromatography-mass spectrometry. Org. Geochem. 56, 120-130. doi: 10.1016/j.orggeochem.2012.12.009
    • (2013) Org. Geochem , vol.56 , pp. 120-130
    • Sessions, A.L.1    Zhang, L.C.2    Welander, P.V.3    Doughty, D.4    Summons, R.E.5    Newman, D.K.6
  • 58
    • 0021327753 scopus 로고
    • Characterization of a new marine methylotroph
    • Strand, S. E., and Lidstrom, M. E. (1984). Characterization of a new marine methylotroph. FEMS Microbiol. Lett. 21, 247-251. doi: 10.1111/j.1574-6968.1984.tb00219.x
    • (1984) FEMS Microbiol. Lett , vol.21 , pp. 247-251
    • Strand, S.E.1    Lidstrom, M.E.2
  • 59
    • 0027973653 scopus 로고
    • Welwitindolinones, unusual alkaloids from the blue-green algae Hapalosiphon welwitschii and Westiella intricata-relationship to fischerindoles and hapalindoles
    • Stratmann, K., Moore, R. E., Bonjouklian, R., Deeter, J. B., Patterson, G. M. L., Shaffer, S., et al. (1994). Welwitindolinones, unusual alkaloids from the blue-green algae Hapalosiphon welwitschii and Westiella intricata-relationship to fischerindoles and hapalindoles. J. Am. Chem. Soc. 116, 9935-9942. doi: 10.1021/ja00101a015
    • (1994) J. Am. Chem. Soc , vol.116 , pp. 9935-9942
    • Stratmann, K.1    Moore, R.E.2    Bonjouklian, R.3    Deeter, J.B.4    Patterson, G.M.L.5    Shaffer, S.6
  • 61
    • 0031765475 scopus 로고    scopus 로고
    • Stress tolerance in a yeast sterol auxotroph: role of ergosterol, heat shock proteins and trehalose
    • Swan, T. M., and Watson, K. (1998). Stress tolerance in a yeast sterol auxotroph: role of ergosterol, heat shock proteins and trehalose. FEMS Microbiol. Lett. 169, 191-197. doi: 10.1111/j.1574-6968.1998.tb13317.x
    • (1998) FEMS Microbiol. Lett , vol.169 , pp. 191-197
    • Swan, T.M.1    Watson, K.2
  • 62
    • 84893452745 scopus 로고    scopus 로고
    • Methyloceanibacter caenitepidi gen. nov., sp. nov., a facultatively methylotrophic bacterium isolated from marine sediments near a hydrothermal vent
    • Takeuchi, M., Katayama, T., Yamagishi, T., Hanada, S., Tamaki, H., Kamagata, Y., et al. (2014). Methyloceanibacter caenitepidi gen. nov., sp. nov., a facultatively methylotrophic bacterium isolated from marine sediments near a hydrothermal vent. Int. J. Syst. Evol. Microbiol. 64, 462-468. doi: 10.1099/ijs.0.053397-0
    • (2014) Int. J. Syst. Evol. Microbiol , vol.64 , pp. 462-468
    • Takeuchi, M.1    Katayama, T.2    Yamagishi, T.3    Hanada, S.4    Tamaki, H.5    Kamagata, Y.6
  • 63
    • 34547489084 scopus 로고    scopus 로고
    • Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments
    • Talavera, G., and Castresana, J. (2007). Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst. Biol. 56, 564-577. doi: 10.1080/10635150701472164
    • (2007) Syst. Biol , vol.56 , pp. 564-577
    • Talavera, G.1    Castresana, J.2
  • 64
    • 84892654351 scopus 로고    scopus 로고
    • Genetic biomarkers of the sterol-biosynthetic pathway in microalgae
    • Villanueva, L., Rijpstra, W. I., Schouten, S., and Damste, J. S. (2014). Genetic biomarkers of the sterol-biosynthetic pathway in microalgae. Environ. Microbiol. Rep. 6, 35-44. doi: 10.1111/1758-2229.12106
    • (2014) Environ. Microbiol. Rep , vol.6 , pp. 35-44
    • Villanueva, L.1    Rijpstra, W.I.2    Schouten, S.3    Damste, J.S.4
  • 65
    • 0037255404 scopus 로고    scopus 로고
    • Sterols in microorganisms
    • Volkman, J. K. (2003). Sterols in microorganisms. Appl. Microbiol. Biotechnol. 60, 495-506. doi: 10.1007/s00253-002-1172-8
    • (2003) Appl. Microbiol. Biotechnol , vol.60 , pp. 495-506
    • Volkman, J.K.1
  • 66
    • 11844305981 scopus 로고    scopus 로고
    • Sterols and other triterpenoids: source specificity and evolution of biosynthetic pathways
    • Volkman, J. K. (2005). Sterols and other triterpenoids: source specificity and evolution of biosynthetic pathways. Org. Geochem. 36, 139-159. doi: 10.1016/j.orggeochem.2004.06.013
    • (2005) Org. Geochem , vol.36 , pp. 139-159
    • Volkman, J.K.1
  • 67
    • 84864721937 scopus 로고    scopus 로고
    • Discovery, taxonomic distribution, and phenotypic characterization of a gene required for 3-methylhopanoid production
    • Welander, P. V., and Summons, R. E. (2012). Discovery, taxonomic distribution, and phenotypic characterization of a gene required for 3-methylhopanoid production. Proc. Natl. Acad. Sci. U.S.A. 109, 12905-12910. doi: 10.1073/pnas.1208255109
    • (2012) Proc. Natl. Acad. Sci. U.S.A , vol.109 , pp. 12905-12910
    • Welander, P.V.1    Summons, R.E.2
  • 68
    • 0014793109 scopus 로고
    • Enrichment, isolation and some properties of methane-utilizing bacteria
    • Whittenbury, R., Phillips, K. C., and Wilkinson, J. F. (1970). Enrichment, isolation and some properties of methane-utilizing bacteria. J. Gen. Microbiol. 61, 205-218. doi: 10.1099/00221287-61-2-205
    • (1970) J. Gen. Microbiol , vol.61 , pp. 205-218
    • Whittenbury, R.1    Phillips, K.C.2    Wilkinson, J.F.3
  • 70
    • 84921973883 scopus 로고    scopus 로고
    • Vulgatibacter incomptus gen. nov., sp. nov. and Labilithrix luteola gen. nov., sp. nov., two myxobacteria isolated from soil in Yakushima Island, and the description of Vulgatibacteraceae fam. nov., Labilitrichaceae fam. nov. and Anaeromyxobacteraceae fam. nov
    • Yamamoto, E., Muramatsu, H., and Nagai, K. (2014). Vulgatibacter incomptus gen. nov., sp. nov. and Labilithrix luteola gen. nov., sp. nov., two myxobacteria isolated from soil in Yakushima Island, and the description of Vulgatibacteraceae fam. nov., Labilitrichaceae fam. nov. and Anaeromyxobacteraceae fam. nov. Int. J. Syst. Evol. Microbiol. 64, 3360-3368. doi: 10.1099/ijs.0.063198-0
    • (2014) Int. J. Syst. Evol. Microbiol , vol.64 , pp. 3360-3368
    • Yamamoto, E.1    Muramatsu, H.2    Nagai, K.3
  • 71
    • 33747885070 scopus 로고    scopus 로고
    • Nonvesicular sterol transport: two protein families and a sterol sensor?
    • Yang, H. (2006). Nonvesicular sterol transport: two protein families and a sterol sensor? Trends Cell Biol. 16, 427-432. doi: 10.1016/j.tcb.2006.07.002
    • (2006) Trends Cell Biol , vol.16 , pp. 427-432
    • Yang, H.1


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