-
1
-
-
0037189323
-
Diversity considerations in HIV-1 vaccine selection
-
Gaschen, B., Taylor, J., Yusim, K., Foley, B., Gao, F., Lang, D., Novitsky, V., Haynes, B., Hahn, B.H., Bhattacharya, T. et al. (2002) Diversity considerations in HIV-1 vaccine selection. Science, 296, 2354-2360.
-
(2002)
Science
, vol.296
, pp. 2354-2360
-
-
Gaschen, B.1
Taylor, J.2
Yusim, K.3
Foley, B.4
Gao, F.5
Lang, D.6
Novitsky, V.7
Haynes, B.8
Hahn, B.H.9
Bhattacharya, T.10
-
2
-
-
84863774072
-
Broadly neutralizing antibodies present new prospects to counter highly antigenically diverse viruses
-
Burton, D.R., Poignard, P., Stanfield, R.L. and Wilson, I.A. (2012) Broadly neutralizing antibodies present new prospects to counter highly antigenically diverse viruses. Science, 337, 183-186.
-
(2012)
Science
, vol.337
, pp. 183-186
-
-
Burton, D.R.1
Poignard, P.2
Stanfield, R.L.3
Wilson, I.A.4
-
3
-
-
80052925616
-
Sequence and structural convergence of broad and potent HIV antibodies that mimic CD4 binding
-
Scheid, J.F., Mouquet, H., Ueberheide, B., Diskin, R., Klein, F., Oliveira, T.Y., Pietzsch, J., Fenyo, D., Abadir, A., Velinzon, K. et al. (2011) Sequence and structural convergence of broad and potent HIV antibodies that mimic CD4 binding. Science, 333, 1633-1637.
-
(2011)
Science
, vol.333
, pp. 1633-1637
-
-
Scheid, J.F.1
Mouquet, H.2
Ueberheide, B.3
Diskin, R.4
Klein, F.5
Oliveira, T.Y.6
Pietzsch, J.7
Fenyo, D.8
Abadir, A.9
Velinzon, K.10
-
4
-
-
80052942203
-
Focused evolution of HIV-1 neutralizing antibodies revealed by structures and deep sequencing
-
Wu, X., Zhou, T., Zhu, J., Zhang, B., Georgiev, I., Wang, C., Chen, X., Longo, N.S., Louder, M., McKee, K. et al. (2011) Focused evolution of HIV-1 neutralizing antibodies revealed by structures and deep sequencing. Science, 333, 1593-1602.
-
(2011)
Science
, vol.333
, pp. 1593-1602
-
-
Wu, X.1
Zhou, T.2
Zhu, J.3
Zhang, B.4
Georgiev, I.5
Wang, C.6
Chen, X.7
Longo, N.S.8
Louder, M.9
McKee, K.10
-
5
-
-
84896739535
-
Global panel of HIV-1 Env reference strains for standardized assessments of vaccine-elicited neutralizing antibodies
-
de Camp, A., Hraber, P., Bailer, R.T., Seaman, M.S., Ochsenbauer, C., Kappes, J., Gottardo, R., Edlefsen, P., Self, S., Tang, H. et al. (2014) Global panel of HIV-1 Env reference strains for standardized assessments of vaccine-elicited neutralizing antibodies. J. Virol., 88, 2489-2507.
-
(2014)
J. Virol.
, vol.88
, pp. 2489-2507
-
-
De Camp, A.1
Hraber, P.2
Bailer, R.T.3
Seaman, M.S.4
Ochsenbauer, C.5
Kappes, J.6
Gottardo, R.7
Edlefsen, P.8
Self, S.9
Tang, H.10
-
6
-
-
73949127978
-
Tiered categorization of a diverse panel of HIV-1 Env pseudoviruses for assessment of neutralizing antibodies
-
Seaman, M.S., Janes, H., Hawkins, N., Grandpre, L.E., Devoy, C., Giri, A., Coffey, R.T., Harris, L., Wood, B., Daniels, M.G. et al. (2010) Tiered categorization of a diverse panel of HIV-1 Env pseudoviruses for assessment of neutralizing antibodies. J. Virol., 84, 1439-1452.
-
(2010)
J. Virol.
, vol.84
, pp. 1439-1452
-
-
Seaman, M.S.1
Janes, H.2
Hawkins, N.3
Grandpre, L.E.4
Devoy, C.5
Giri, A.6
Coffey, R.T.7
Harris, L.8
Wood, B.9
Daniels, M.G.10
-
7
-
-
45849125030
-
Evaluating neutralizing antibodies against HIV, SIV, and SHIV in luciferase reporter gene assays
-
Chapter 12, Unit 12.11
-
Montefiori, D.C. (2005) Evaluating neutralizing antibodies against HIV, SIV, and SHIV in luciferase reporter gene assays. Curr. Protoc. Immunol., Chapter 12, Unit 12.11.
-
(2005)
Curr. Protoc. Immunol.
-
-
Montefiori, D.C.1
-
8
-
-
84879538530
-
Computational analysis of anti-HIV-1 antibody neutralization panel data to identify potential functional epitope residues
-
West, A.P. Jr, Scharf, L., Horwitz, J., Klein, F., Nussenzweig, M.C. and Bjorkman, P.J. (2013) Computational analysis of anti-HIV-1 antibody neutralization panel data to identify potential functional epitope residues. Proc. Natl. Acad. Sci. U.S.A., 110, 10598-10603.
-
(2013)
Proc. Natl. Acad. Sci. U.S.A
, vol.110
, pp. 10598-10603
-
-
West, A.P.1
Scharf, L.2
Horwitz, J.3
Klein, F.4
Nussenzweig, M.C.5
Bjorkman, P.J.6
-
9
-
-
84891799642
-
BNAber: Database of broadly neutralizing HIV antibodies
-
Eroshkin, A.M., Le Blanc, A., Weekes, D., Post, K., Li, Z., Rajput, A., Butera, S.T., Burton, D.R. and Godzik, A. (2014) bNAber: database of broadly neutralizing HIV antibodies. Nucleic Acids Res., 42, D1133-D1139.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D1133-D1139
-
-
Eroshkin, A.M.1
Le Blanc, A.2
Weekes, D.3
Post, K.4
Li, Z.5
Rajput, A.6
Butera, S.T.7
Burton, D.R.8
Godzik, A.9
-
10
-
-
84883381602
-
Residue-level prediction of HIV-1 antibody epitopes based on neutralization of diverse viral strains
-
Chuang, G.Y., Acharya, P., Schmidt, S.D., Yang, Y., Louder, M.K., Zhou, T., Kwon, Y.D., Pancera, M., Bailer, R.T., Doria-Rose, N.A. et al. (2013) Residue-level prediction of HIV-1 antibody epitopes based on neutralization of diverse viral strains. J. Virol., 87, 10047-10058.
-
(2013)
J. Virol.
, vol.87
, pp. 10047-10058
-
-
Chuang, G.Y.1
Acharya, P.2
Schmidt, S.D.3
Yang, Y.4
Louder, M.K.5
Zhou, T.6
Kwon, Y.D.7
Pancera, M.8
Bailer, R.T.9
Doria-Rose, N.A.10
-
11
-
-
84904795502
-
NEP: Web server for epitope prediction based on antibody neutralization of viral strains with diverse sequences
-
Chuang, G.Y., Liou, D., Kwong, P.D. and Georgiev, I.S. (2014) NEP: web server for epitope prediction based on antibody neutralization of viral strains with diverse sequences. Nucleic Acids Res., 42, W64-W71.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. W64-W71
-
-
Chuang, G.Y.1
Liou, D.2
Kwong, P.D.3
Georgiev, I.S.4
-
12
-
-
78349299783
-
Genetic signatures in the envelope glycoproteins of HIV-1 that associate with broadly neutralizing antibodies
-
Gnanakaran, S., Daniels, M.G., Bhattacharya, T., Lapedes, A.S., Sethi, A., Li, M., Tang, H., Greene, K., Gao, H., Haynes, B.F. et al. (2010) Genetic signatures in the envelope glycoproteins of HIV-1 that associate with broadly neutralizing antibodies. PLoS Comput. Biol., 6, e1000955.
-
(2010)
PLoS Comput. Biol.
, vol.6
, pp. e1000955
-
-
Gnanakaran, S.1
Daniels, M.G.2
Bhattacharya, T.3
Lapedes, A.S.4
Sethi, A.5
Li, M.6
Tang, H.7
Greene, K.8
Gao, H.9
Haynes, B.F.10
-
13
-
-
85000360533
-
Reconstructing a B-cell clonal lineage. I. Statistical inference of unobserved ancestors
-
Kepler, T.B. (2013) Reconstructing a B-cell clonal lineage. I. Statistical inference of unobserved ancestors. F1000Res, 2, 103.
-
(2013)
F1000Res
, vol.2
, pp. 103
-
-
Kepler, T.B.1
-
14
-
-
84883563447
-
IgBLAST: An immunoglobulin variable domain sequence analysis tool
-
Ye, J., Ma, N., Madden, T.L. and Ostell, J.M. (2013) IgBLAST: an immunoglobulin variable domain sequence analysis tool. Nucleic Acids Res., 41, W34-W40.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. W34-W40
-
-
Ye, J.1
Ma, N.2
Madden, T.L.3
Ostell, J.M.4
-
15
-
-
79958045471
-
IMGT/V-QUEST: IMGT standardized analysis of the immunoglobulin (IG) and T cell receptor (TR) nucleotide sequences
-
Giudicelli, V., Brochet, X. and Lefranc, M.P. (2011) IMGT/V-QUEST: IMGT standardized analysis of the immunoglobulin (IG) and T cell receptor (TR) nucleotide sequences. Cold Spring Harb. Protoc., 695-715.
-
(2011)
Cold Spring Harb. Protoc.
, pp. 695-715
-
-
Giudicelli, V.1
Brochet, X.2
Lefranc, M.P.3
-
16
-
-
48449094247
-
IMGT/V-QUEST: The highly customized and integrated system for IG and TR standardized V-J and V-D-J sequence analysis
-
Brochet, X., Lefranc, M.P. and Giudicelli, V. (2008) IMGT/V-QUEST: the highly customized and integrated system for IG and TR standardized V-J and V-D-J sequence analysis. Nucleic Acids Res., 36, W503-W508.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. W503-W508
-
-
Brochet, X.1
Lefranc, M.P.2
Giudicelli, V.3
-
17
-
-
34547840205
-
IHMMune-align: Hidden Markov model-based alignment and identification of germline genes in rearranged immunoglobulin gene sequences
-
Gaeta, B.A., Malming, H.R., Jackson, K.J., Bain, M.E., Wilson, P. and Collins, A.M. (2007) iHMMune-align: hidden Markov model-based alignment and identification of germline genes in rearranged immunoglobulin gene sequences. Bioinformatics, 23, 1580-1587.
-
(2007)
Bioinformatics
, vol.23
, pp. 1580-1587
-
-
Gaeta, B.A.1
Malming, H.R.2
Jackson, K.J.3
Bain, M.E.4
Wilson, P.5
Collins, A.M.6
-
18
-
-
2442717677
-
Characterization of the human Ig heavy chain antigen binding complementarity determining region 3 using a newly developed software algorithm, JOINSOLVER
-
Souto-Carneiro, M.M., Longo, N.S., Russ, D.E., Sun, H.W. and Lipsky, P.E. (2004) Characterization of the human Ig heavy chain antigen binding complementarity determining region 3 using a newly developed software algorithm, JOINSOLVER. J. Immunol., 172, 6790-6802.
-
(2004)
J. Immunol.
, vol.172
, pp. 6790-6802
-
-
Souto-Carneiro, M.M.1
Longo, N.S.2
Russ, D.E.3
Sun, H.W.4
Lipsky, P.E.5
-
19
-
-
84876797103
-
Co-evolution of a broadly neutralizing HIV-1 antibody and founder virus
-
Liao, H.X., Lynch, R., Zhou, T., Gao, F., Alam, S.M., Boyd, S.D., Fire, A.Z., Roskin, K.M., Schramm, C.A., Zhang, Z. et al. (2013) Co-evolution of a broadly neutralizing HIV-1 antibody and founder virus. Nature, 496, 469-476.
-
(2013)
Nature
, vol.496
, pp. 469-476
-
-
Liao, H.X.1
Lynch, R.2
Zhou, T.3
Gao, F.4
Alam, S.M.5
Boyd, S.D.6
Fire, A.Z.7
Roskin, K.M.8
Schramm, C.A.9
Zhang, Z.10
-
20
-
-
82755184131
-
Increasing the potency and breadth of an HIV antibody by using structure-based rational design
-
Diskin, R., Scheid, J.F., Marcovecchio, P.M., West, A.P. Jr, Klein, F., Gao, H., Gnanapragasam, P.N., Abadir, A., Seaman, M.S., Nussenzweig, M.C. et al. (2011) Increasing the potency and breadth of an HIV antibody by using structure-based rational design. Science, 334, 1289-1293.
-
(2011)
Science
, vol.334
, pp. 1289-1293
-
-
Diskin, R.1
Scheid, J.F.2
Marcovecchio, P.M.3
West, A.P.4
Klein, F.5
Gao, H.6
Gnanapragasam, P.N.7
Abadir, A.8
Seaman, M.S.9
Nussenzweig, M.C.10
-
21
-
-
82255179322
-
A potent and broad neutralizing antibody recognizes and penetrates the HIV glycan shield
-
Pejchal, R., Doores, K.J., Walker, L.M., Khayat, R., Huang, P.S., Wang, S.K., Stanfield, R.L., Julien, J.P., Ramos, A., Crispin, M. et al. (2011) A potent and broad neutralizing antibody recognizes and penetrates the HIV glycan shield. Science, 334, 1097-1103.
-
(2011)
Science
, vol.334
, pp. 1097-1103
-
-
Pejchal, R.1
Doores, K.J.2
Walker, L.M.3
Khayat, R.4
Huang, P.S.5
Wang, S.K.6
Stanfield, R.L.7
Julien, J.P.8
Ramos, A.9
Crispin, M.10
-
22
-
-
84861374644
-
PGV04, an HIV-1 gp120 CD4 binding site antibody, is broad and potent in neutralization but does not induce conformational changes characteristic of CD4
-
Falkowska, E., Ramos, A., Feng, Y., Zhou, T., Moquin, S., Walker, L.M., Wu, X., Seaman, M.S., Wrin, T., Kwong, P.D. et al. (2012) PGV04, an HIV-1 gp120 CD4 binding site antibody, is broad and potent in neutralization but does not induce conformational changes characteristic of CD4. J. Virol., 86, 4394-4403.
-
(2012)
J. Virol.
, vol.86
, pp. 4394-4403
-
-
Falkowska, E.1
Ramos, A.2
Feng, Y.3
Zhou, T.4
Moquin, S.5
Walker, L.M.6
Wu, X.7
Seaman, M.S.8
Wrin, T.9
Kwong, P.D.10
-
23
-
-
84900467984
-
Structural delineation of a quaternary, cleavage-dependent epitope at the gp41-gp120 interface on intact HIV-1 Env trimers
-
Blattner, C., Lee, J.H., Sliepen, K., Derking, R., Falkowska, E., de la Pena, A.T., Cupo, A., Julien, J.P., van Gils, M., Lee, P.S. et al. (2014) Structural delineation of a quaternary, cleavage-dependent epitope at the gp41-gp120 interface on intact HIV-1 Env trimers. Immunity, 40, 669-680.
-
(2014)
Immunity
, vol.40
, pp. 669-680
-
-
Blattner, C.1
Lee, J.H.2
Sliepen, K.3
Derking, R.4
Falkowska, E.5
De-La-Pena, A.T.6
Cupo, A.7
Julien, J.P.8
Van Gils, M.9
Lee, P.S.10
-
24
-
-
84899909771
-
Antibody 8ANC195 reveals a site of broad vulnerability on the HIV-1 envelope spike
-
Scharf, L., Scheid, J.F., Lee, J.H., West, A.P. Jr, Chen, C., Gao, H., Gnanapragasam, P.N., Mares, R., Seaman, M.S., Ward, A.B. et al. (2014) Antibody 8ANC195 reveals a site of broad vulnerability on the HIV-1 envelope spike. Cell Rep., 7, 785-795.
-
(2014)
Cell Rep.
, vol.7
, pp. 785-795
-
-
Scharf, L.1
Scheid, J.F.2
Lee, J.H.3
West, A.P.4
Chen, C.5
Gao, H.6
Gnanapragasam, P.N.7
Mares, R.8
Seaman, M.S.9
Ward, A.B.10
-
25
-
-
83455254775
-
Structure of HIV-1 gp120 V1/V2 domain with broadly neutralizing antibody PG9
-
McLellan, J.S., Pancera, M., Carrico, C., Gorman, J., Julien, J.P., Khayat, R., Louder, R., Pejchal, R., Sastry, M., Dai, K. et al. (2011) Structure of HIV-1 gp120 V1/V2 domain with broadly neutralizing antibody PG9. Nature, 480, 336-343.
-
(2011)
Nature
, vol.480
, pp. 336-343
-
-
McLellan, J.S.1
Pancera, M.2
Carrico, C.3
Gorman, J.4
Julien, J.P.5
Khayat, R.6
Louder, R.7
Pejchal, R.8
Sastry, M.9
Dai, K.10
-
26
-
-
77954943648
-
Structural basis for broad and potent neutralization of HIV-1 by antibody VRC01
-
Zhou, T., Georgiev, I., Wu, X., Yang, Z.Y., Dai, K., Finzi, A., Kwon, Y.D., Scheid, J.F., Shi, W., Xu, L. et al. (2010) Structural basis for broad and potent neutralization of HIV-1 by antibody VRC01. Science, 329, 811-817.
-
(2010)
Science
, vol.329
, pp. 811-817
-
-
Zhou, T.1
Georgiev, I.2
Wu, X.3
Yang, Z.Y.4
Dai, K.5
Finzi, A.6
Kwon, Y.D.7
Scheid, J.F.8
Shi, W.9
Xu, L.10
-
27
-
-
33847101745
-
Structural definition of a conserved neutralization epitope on HIV-1 gp120
-
Zhou, T., Xu, L., Dey, B., Hessell, A.J., Van Ryk, D., Xiang, S.H., Yang, X., Zhang, M.Y., Zwick, M.B., Arthos, J. et al. (2007) Structural definition of a conserved neutralization epitope on HIV-1 gp120. Nature, 445, 732-737.
-
(2007)
Nature
, vol.445
, pp. 732-737
-
-
Zhou, T.1
Xu, L.2
Dey, B.3
Hessell, A.J.4
Van Ryk, D.5
Xiang, S.H.6
Yang, X.7
Zhang, M.Y.8
Zwick, M.B.9
Arthos, J.10
-
28
-
-
0032543307
-
Structure of an HIV gp120 envelope glycoprotein in complex with the CD4 receptor and a neutralizing human antibody
-
Kwong, P.D., Wyatt, R., Robinson, J., Sweet, R.W., Sodroski, J. and Hendrickson, W.A. (1998) Structure of an HIV gp120 envelope glycoprotein in complex with the CD4 receptor and a neutralizing human antibody. Nature, 393, 648-659.
-
(1998)
Nature
, vol.393
, pp. 648-659
-
-
Kwong, P.D.1
Wyatt, R.2
Robinson, J.3
Sweet, R.W.4
Sodroski, J.5
Hendrickson, W.A.6
-
29
-
-
84869140656
-
Sequences in glycoprotein gp41, the CD4 binding site, and the V2 domain regulate sensitivity and resistance of HIV-1 to broadly neutralizing antibodies
-
O'Rourke, S.M., Schweighardt, B., Phung, P., Mesa, K.A., Vollrath, A.L., Tatsuno, G.P., To, B., Sinangil, F., Limoli, K., Wrin, T. et al. (2012) Sequences in glycoprotein gp41, the CD4 binding site, and the V2 domain regulate sensitivity and resistance of HIV-1 to broadly neutralizing antibodies. J. Virol., 86, 12105-12114.
-
(2012)
J. Virol.
, vol.86
, pp. 12105-12114
-
-
O'Rourke, S.M.1
Schweighardt, B.2
Phung, P.3
Mesa, K.A.4
Vollrath, A.L.5
Tatsuno, G.P.6
To, B.7
Sinangil, F.8
Limoli, K.9
Wrin, T.10
-
30
-
-
84871950126
-
The tale of the long tail: The cytoplasmic domain of HIV-1 gp41
-
Postler, T.S. and Desrosiers, R.C. (2013) The tale of the long tail: the cytoplasmic domain of HIV-1 gp41. J. Virol., 87, 2-15.
-
(2013)
J. Virol.
, vol.87
, pp. 2-15
-
-
Postler, T.S.1
Desrosiers, R.C.2
-
31
-
-
84864387259
-
A short segment of the HIV-1 gp120 V1/V2 region is a major determinant of resistance to V1/V2 neutralizing antibodies
-
Doria-Rose, N.A., Georgiev, I., O'Dell, S., Chuang, G.Y., Staupe, R.P., McLellan, J.S., Gorman, J., Pancera, M., Bonsignori, M., Haynes, B.F. et al. (2012) A short segment of the HIV-1 gp120 V1/V2 region is a major determinant of resistance to V1/V2 neutralizing antibodies. J. Virol., 86, 8319-8323.
-
(2012)
J. Virol.
, vol.86
, pp. 8319-8323
-
-
Doria-Rose, N.A.1
Georgiev, I.2
O'Dell, S.3
Chuang, G.Y.4
Staupe, R.P.5
McLellan, J.S.6
Gorman, J.7
Pancera, M.8
Bonsignori, M.9
Haynes, B.F.10
|