메뉴 건너뛰기




Volumn 54, Issue 8, 2016, Pages 1964-1974

Expansion of microbial forensics

Author keywords

[No Author keywords available]

Indexed keywords

FORENSIC IDENTIFICATION; FORENSIC PATHOLOGY; GENETIC MARKER; GENETIC SCREENING; HOUSEKEEPING GENE; INTESTINE FLORA; MASSIVELY PARALLEL SEQUENCING; METAGENOMICS; MICROBIAL DIVERSITY; MICROBIAL FORENSIC; NONHUMAN; POSTMORTEM CHANGE; PRIORITY JOURNAL; REVIEW; SEQUENCE ANALYSIS; VALIDATION PROCESS; BIOLOGY; FORENSIC MEDICINE; HIGH THROUGHPUT SEQUENCING; HUMAN; MICROBIOLOGICAL EXAMINATION; PROCEDURES; TRENDS;

EID: 84979642626     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.00046-16     Document Type: Review
Times cited : (81)

References (112)
  • 2
    • 33744527832 scopus 로고    scopus 로고
    • Microbial forensics: Application to bioterrorism preparedness and response
    • Morse SA, Budowle B. 2006. Microbial forensics: application to bioterrorism preparedness and response. Infect Dis Clin North Am 20:455-473. http://dx. doi. org/10. 1016/j. idc. 2006. 03. 004.
    • (2006) Infect Dis Clin North Am , vol.20 , pp. 455-473
    • Morse, S.A.1    Budowle, B.2
  • 4
    • 84979511344 scopus 로고    scopus 로고
    • Centers for Disease Control and Prevention. Centers for Disease Control and Prevention, Atlanta, GA
    • Centers for Disease Control and Prevention. 2016. Bioterrorism agents/diseases. Centers for Disease Control and Prevention, Atlanta, GA. http://emergency. cdc. gov/agent/agentlist. asp.
    • (2016) Bioterrorism Agents/diseases
  • 6
    • 84979628613 scopus 로고    scopus 로고
    • Institute of Medicine In The science and applications of microbial genomics: workshop summary. The National Academies Press, Washington, DC
    • Institute of Medicine. 2013. Workshop overview, p 12. In The science and applications of microbial genomics: workshop summary. The National Academies Press, Washington, D.C.
    • (2013) Workshop Overview , pp. 12
  • 7
    • 84979584863 scopus 로고    scopus 로고
    • Institute of Medicine. In The science and applications of microbial genomics: workshop summary. The National Academies Press, Washington, DC
    • Institute of Medicine. 2013. Workshop overview, p 26. In The science and applications of microbial genomics: workshop summary. The National Academies Press, Washington, D.C.
    • (2013) Workshop Overview , pp. 26
  • 18
    • 84858439578 scopus 로고    scopus 로고
    • The human microbiome: At the interface of health and disease
    • Cho I, Blaser MJ. 2012. The human microbiome: at the interface of health and disease. Nat Rev Genet 13:260-270.
    • (2012) Nat Rev Genet , vol.13 , pp. 260-270
    • Cho, I.1    Blaser, M.J.2
  • 20
    • 84938791971 scopus 로고    scopus 로고
    • Risks of antibiotic exposures early in life on the developing microbiome
    • Schulfer A, Blaser MJ. 2015. Risks of antibiotic exposures early in life on the developing microbiome. PLoS Pathog 11:e1004903. http://dx. doi. org /10. 1371/journal. ppat. 1004903.
    • (2015) PLoS Pathog , vol.11 , pp. e1004903
    • Schulfer, A.1    Blaser, M.J.2
  • 22
    • 0028031329 scopus 로고
    • Analysis of a rape case by direct sequencing of the human immunodeficiency virus type 1 pol and gag genes
    • Albert J, Wahlberg J, Leitner T, Escanilla D, Uhlen M. 1994. Analysis of a rape case by direct sequencing of the human immunodeficiency virus type 1 pol and gag genes. J Virol 68:5918-5924.
    • (1994) J Virol , vol.68 , pp. 5918-5924
    • Albert, J.1    Wahlberg, J.2    Leitner, T.3    Escanilla, D.4    Uhlen, M.5
  • 24
    • 0034827865 scopus 로고    scopus 로고
    • Molecular investigation of transmission of human immunodeficiency virus type 1 in a criminal case
    • Machuca R, Jørgensen LB, Theilade P, Nielsen C. 2001. Molecular investigation of transmission of human immunodeficiency virus type 1 in a criminal case. Clin Diagn Lab Immunol 8:884-890.
    • (2001) Clin Diagn Lab Immunol , vol.8 , pp. 884-890
    • Machuca, R.1    Jørgensen, L.B.2    Theilade, P.3    Nielsen, C.4
  • 27
    • 78650746800 scopus 로고    scopus 로고
    • Source identification in two criminal cases using phylogenetic analysis of HIV-1 DNA sequences
    • Scaduto Di, Brown JM, Haaland WC, Zwickl DJ, Hillis DM, Metzker ML. 2010. Source identification in two criminal cases using phylogenetic analysis of HIV-1 DNA sequences. Proc Natl Acad Sci U S A 107:21242-21247. http://dx. doi. org/10. 1073/pnas. 1015673107.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 21242-21247
    • Scaduto, D.I.1    Brown, J.M.2    Haaland, W.C.3    Zwickl, D.J.4    Hillis, D.M.5    Metzker, M.L.6
  • 28
    • 84880673210 scopus 로고    scopus 로고
    • Molecular evolution in court: Analysis of a large hepatitis C virus outbreak from an evolving source
    • González-Candelas F, Bracho MA, Wróbel B, Moya A. 2013. Molecular evolution in court: analysis of a large hepatitis C virus outbreak from an evolving source. BMC Biol 11:76. http://dx. doi. org/10. 1186/1741-7007-11-76.
    • (2013) BMC Biol , vol.11 , pp. 76
    • González-Candelas, F.1    Bracho, M.A.2    Wróbel, B.3    Moya, A.4
  • 30
    • 84891826092 scopus 로고    scopus 로고
    • The potential use of bacterial community succession in forensics as described by high throughput metagenomic sequencing
    • Pechal JL, Crippen TL, Benbow ME, Tarone AM, Dowd S, Tomberlin JK. 2014. The potential use of bacterial community succession in forensics as described by high throughput metagenomic sequencing. Int J Legal Med 128:193-205. http://dx. doi. org/10. 1007/s00414-013-0872-1.
    • (2014) Int J Legal Med , vol.128 , pp. 193-205
    • Pechal, J.L.1    Crippen, T.L.2    Benbow, M.E.3    Tarone, A.M.4    Dowd, S.5    Tomberlin, J.K.6
  • 32
    • 84862276328 scopus 로고    scopus 로고
    • Structure, function and diversity of the healthy human microbiome
    • Human Microbiome Project Consortium
    • Human Microbiome Project Consortium. 2012. Structure, function and diversity of the healthy human microbiome. Nature 486:207-214. http://dx. doi. org/10. 1038/nature11234.
    • (2012) Nature , vol.486 , pp. 207-214
  • 33
    • 84862286169 scopus 로고    scopus 로고
    • A framework for human microbiome research
    • Human Microbiome Project Consortium
    • Human Microbiome Project Consortium. 2012. A framework for human microbiome research. Nature 486:215-221. http://dx. doi. org/10 . 1038/nature11209.
    • (2012) Nature , vol.486 , pp. 215-221
  • 35
    • 72949091232 scopus 로고    scopus 로고
    • Bacterial community variation in human body habitats across space and time
    • Costello EK, Lauber CL, Hamady M, Fierer N, Gordon JI, Knight R. 2009. Bacterial community variation in human body habitats across space and time. Science 326:1694-1697. http://dx. doi. org/10 . 1126/science. 1177486.
    • (2009) Science , vol.326 , pp. 1694-1697
    • Costello, E.K.1    Lauber, C.L.2    Hamady, M.3    Fierer, N.4    Gordon, J.I.5    Knight, R.6
  • 36
    • 84925590143 scopus 로고    scopus 로고
    • Selection and implementation of expanded CODiS core loci in the United States
    • Hares DR. 2015. Selection and implementation of expanded CODiS core loci in the United States. Forensic Sci Int Genet 17:33-34. http://dx . doi. org/10. 1016/j. fsigen. 2015. 03. 006.
    • (2015) Forensic Sci Int Genet , vol.17 , pp. 33-34
    • Hares, D.R.1
  • 37
    • 0037057127 scopus 로고    scopus 로고
    • The propensity of individuals to deposit DNA and secondary transfer of low level DNA from individuals to inert surfaces
    • Lowe A, Murray C, Whitaker J, Tully G, Gill P. 2002. The propensity of individuals to deposit DNA and secondary transfer of low level DNA from individuals to inert surfaces. Forensic Sci Int 129:25-34. http://dx . doi. org/10. 1016/S0379-0738(02)00207-4.
    • (2002) Forensic Sci Int , vol.129 , pp. 25-34
    • Lowe, A.1    Murray, C.2    Whitaker, J.3    Tully, G.4    Gill, P.5
  • 38
    • 84868125182 scopus 로고    scopus 로고
    • An evaluation of the transfer of saliva-derived DNA
    • Warshauer DH, Marshall P, Kelley S, King J, Budowle B. 2012. An evaluation of the transfer of saliva-derived DNA. Int J Legal Med 126: 851-861. http://dx. doi. org/10. 1007/s00414-012-0743-1.
    • (2012) Int J Legal Med , vol.126 , pp. 851-861
    • Warshauer, D.H.1    Marshall, P.2    Kelley, S.3    King, J.4    Budowle, B.5
  • 40
    • 43249088516 scopus 로고    scopus 로고
    • Forensically relevant SNP classes
    • Budowle B, Van Daal A. 2008. Forensically relevant SNP classes. Biotechniques 44:603-610.
    • (2008) Biotechniques , vol.44 , pp. 603-610
    • Budowle, B.1    Van Daal, A.2
  • 41
    • 0032587334 scopus 로고    scopus 로고
    • Male DNA typing from 25-yearold vaginal swabs using y chromosomal STR polymorphisms in a retrial request case
    • Honda K, Roewer L, de Knijff P. 1999. Male DNA typing from 25-yearold vaginal swabs using Y chromosomal STR polymorphisms in a retrial request case. J Forensic Sci 44:868-872.
    • (1999) J Forensic Sci , vol.44 , pp. 868-872
    • Honda, K.1    Roewer, L.2    De Knijff, P.3
  • 42
    • 0034710344 scopus 로고    scopus 로고
    • An investigation of the rigor of interpretation rules for STRs derived from less than 100 pg of DNA
    • Gill P, Whitaker J, Flaxman C, Brown N, Buckleton J. 2000. An investigation of the rigor of interpretation rules for STRs derived from less than 100 pg of DNA. Forensic Sci Int 112:17-40. http://dx. doi. org /10. 1016/S0379-0738(00)00158-4.
    • (2000) Forensic Sci Int , vol.112 , pp. 17-40
    • Gill, P.1    Whitaker, J.2    Flaxman, C.3    Brown, N.4    Buckleton, J.5
  • 44
    • 70149118729 scopus 로고    scopus 로고
    • Validity of low copy number typing and applications to forensic science
    • Budowle B, Eisenberg AJ, van Daal A. 2009. Validity of low copy number typing and applications to forensic science. Croat Med J 50:207-217. http://dx. doi. org/10. 3325/cmj. 2009. 50. 207.
    • (2009) Croat Med J , vol.50 , pp. 207-217
    • Budowle, B.1    Eisenberg, A.J.2    Van Daal, A.3
  • 46
    • 84867003002 scopus 로고    scopus 로고
    • Comparison of bacterial DNA profiles of footwear insoles and soles of feet for the forensic discrimination of footwear owners
    • Goga H. 2012. Comparison of bacterial DNA profiles of footwear insoles and soles of feet for the forensic discrimination of footwear owners. Int J Legal Med 126:815-823. http://dx. doi. org/10. 1007/s00414-012-0733-3.
    • (2012) Int J Legal Med , vol.126 , pp. 815-823
    • Goga, H.1
  • 47
    • 79952200492 scopus 로고    scopus 로고
    • Microbial DNA fingerprinting of human fingerprints: Dynamic colonization of fingertip microflora challenges human host inferences for forensic purposes
    • Tims S, van Wamel W, Endtz HP, van Belkum A, Kayser M. 2010. Microbial DNA fingerprinting of human fingerprints: dynamic colonization of fingertip microflora challenges human host inferences for forensic purposes. Int J Legal Med 124:477-481. http://dx. doi. org/10. 1007 /s00414-009-0352-9.
    • (2010) Int J Legal Med , vol.124 , pp. 477-481
    • Tims, S.1    Van Wamel, W.2    Endtz, H.P.3    Van Belkum, A.4    Kayser, M.5
  • 48
    • 56649124715 scopus 로고    scopus 로고
    • The influence of sex, handedness, and washing on the diversity of hand surface bacteria
    • Fierer N, Hamady M, Lauber CL, Knight R. 2008. The influence of sex, handedness, and washing on the diversity of hand surface bacteria. Proc Natl Acad Sci U S A 105:17994-17999. http://dx. doi. org/10. 1073/pnas . 0807920105.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 17994-17999
    • Fierer, N.1    Hamady, M.2    Lauber, C.L.3    Knight, R.4
  • 50
    • 84880471652 scopus 로고    scopus 로고
    • Long-term temporal analysis of the human fecal microbiota revealed a stable core of dominant bacterial species
    • Martínez I, Muller CE, Walter J. 2013. Long-term temporal analysis of the human fecal microbiota revealed a stable core of dominant bacterial species. PLoS One 8:e69621. http://dx. doi. org/10. 1371/journal. pone . 0069621.
    • (2013) PLoS One , vol.8 , pp. e69621
    • Martínez, I.1    Muller, C.E.2    Walter, J.3
  • 51
    • 79952748287 scopus 로고    scopus 로고
    • Unravelling the effects of the environment and host genotype on the gut microbiome
    • Spor A, Koren O, Ley R. 2011. Unravelling the effects of the environment and host genotype on the gut microbiome. Nat Rev Microbiol 9:279-290. http://dx. doi. org/10. 1038/nrmicro2540.
    • (2011) Nat Rev Microbiol , vol.9 , pp. 279-290
    • Spor, A.1    Koren, O.2    Ley, R.3
  • 52
    • 78049494788 scopus 로고    scopus 로고
    • Short-term antibiotic treatment has differing long-term impacts on the human throat and gut microbiome
    • Jakobsson HE, Jernberg C, Andersson AF, Sjölund-Karlsson M, Jansson JK, Engstrand L. 2010. Short-term antibiotic treatment has differing long-term impacts on the human throat and gut microbiome. PLoS One 5:e9836. http://dx. doi. org/10. 1371/journal. pone. 0009836.
    • (2010) PLoS One , vol.5 , pp. e9836
    • Jakobsson, H.E.1    Jernberg, C.2    Andersson, A.F.3    Sjölund-Karlsson, M.4    Jansson, J.K.5    Engstrand, L.6
  • 53
    • 0043032926 scopus 로고    scopus 로고
    • Messenger RNA profiling: A prototype method to supplant conventional methods for body fluid identification
    • Juusola J, Ballantyne J. 2003. Messenger RNA profiling: a prototype method to supplant conventional methods for body fluid identification. Forensic Sci Int 135:85-96. http://dx. doi. org/10. 1016/S0379-0738(03)00197-X.
    • (2003) Forensic Sci Int , vol.135 , pp. 85-96
    • Juusola, J.1    Ballantyne, J.2
  • 54
    • 38649138798 scopus 로고    scopus 로고
    • Stable RNA markers for identification of blood and saliva stains revealed from whole genome expression analysis of time-wise degraded samples
    • Zubakov D, Hanekamp E, Kokshoorn M, van Ijcken W, Kayser M. 2008. Stable RNA markers for identification of blood and saliva stains revealed from whole genome expression analysis of time-wise degraded samples. Int J Legal Med 122:135-142. http://dx. doi. org/10. 1007/s00414-007-0182-6.
    • (2008) Int J Legal Med , vol.122 , pp. 135-142
    • Zubakov, D.1    Hanekamp, E.2    Kokshoorn, M.3    Van Ijcken, W.4    Kayser, M.5
  • 55
    • 79951791071 scopus 로고    scopus 로고
    • DNA methylation-based forensic tissue identification
    • Frumkin D, Wasserstrom A, Budowle B, Davidson A. 2011. DNA methylation-based forensic tissue identification. Forensic Sci Int Genet 5:517-524. http://dx. doi. org/10. 1016/j. fsigen. 2010. 12. 001.
    • (2011) Forensic Sci Int Genet , vol.5 , pp. 517-524
    • Frumkin, D.1    Wasserstrom, A.2    Budowle, B.3    Davidson, A.4
  • 56
    • 84858334986 scopus 로고    scopus 로고
    • Detection of bacterial 16S ribosomal RNA genes for forensic identification of vaginal fluid
    • Akutsu T, Motani H, Watanabe K, Iwase H, Sakurada K. 2012. Detection of bacterial 16S ribosomal RNA genes for forensic identification of vaginal fluid. Leg Med (Tokyo) 14:160-162. http://dx. doi. org/10 . 1016/j. legalmed. 2012. 01. 005.
    • (2012) Leg Med (Tokyo) , vol.14 , pp. 160-162
    • Akutsu, T.1    Motani, H.2    Watanabe, K.3    Iwase, H.4    Sakurada, K.5
  • 57
    • 84901976189 scopus 로고    scopus 로고
    • A simple identification method for vaginal secretions using relative quantification of Lactobacillus DNA
    • Doi M, Gamo S, Okiura T, Nishimukai H, Asano M. 2014. A simple identification method for vaginal secretions using relative quantification of Lactobacillus DNA. Forensic Sci Int Genet 12:93-99. http://dx. doi. org /10. 1016/j. fsigen. 2014. 05. 005.
    • (2014) Forensic Sci Int Genet , vol.12 , pp. 93-99
    • Doi, M.1    Gamo, S.2    Okiura, T.3    Nishimukai, H.4    Asano, M.5
  • 58
    • 77956940747 scopus 로고    scopus 로고
    • The use of bacteria for the identification of vaginal secretions
    • Fleming RI, Harbison S. 2010. The use of bacteria for the identification of vaginal secretions. Forensic Sci Int Genet 4:311-315. http://dx. doi. org /10. 1016/j. fsigen. 2009. 11. 008.
    • (2010) Forensic Sci Int Genet , vol.4 , pp. 311-315
    • Fleming, R.I.1    Harbison, S.2
  • 59
    • 58149156419 scopus 로고    scopus 로고
    • A novel method for the identification of saliva by detecting oral streptococci using PCR
    • Nakanishi H, Kido A, Ohmori T, Takada A, Hara M, Adachi N, Saito K. 2009. A novel method for the identification of saliva by detecting oral streptococci using PCR. Forensic Sci Int 183:20-23. http://dx. doi. org/10 . 1016/j. forsciint. 2008. 10. 003.
    • (2009) Forensic Sci Int , vol.183 , pp. 20-23
    • Nakanishi, H.1    Kido, A.2    Ohmori, T.3    Takada, A.4    Hara, M.5    Adachi, N.6    Saito, K.7
  • 60
    • 84891779174 scopus 로고    scopus 로고
    • Body fluid identification by integrated analysis of DNA methylation and body fluid-specific microbial DNA
    • Choi A, Shin K-J, Yang WI, Lee HY. 2014. Body fluid identification by integrated analysis of DNA methylation and body fluid-specific microbial DNA. Int J Legal Med 128:33-41. http://dx. doi. org/10. 1007/s00414-013-0918-4.
    • (2014) Int J Legal Med , vol.128 , pp. 33-41
    • Choi, A.1    Shin, K.-J.2    Yang, W.I.3    Lee, H.Y.4
  • 61
    • 0030434642 scopus 로고    scopus 로고
    • Survival of nosocomial bacteria at ambient temperature
    • Smith S, Eng R, Padberg FJ, Jr. 1996. Survival of nosocomial bacteria at ambient temperature. J Med 27:293-302.
    • (1996) J Med , vol.27 , pp. 293-302
    • Smith, S.1    Eng, R.2    Padberg, F.J.3
  • 62
    • 59049105354 scopus 로고    scopus 로고
    • Investigation of bacterial pathogens on 70 frequently used environmental surfaces in a large urban U. S. University
    • Brooke JS, Annand JW, Hammer A, Dembkowski K, Shulman ST. 2009. Investigation of bacterial pathogens on 70 frequently used environmental surfaces in a large urban U. S. university. J Environ Health 71:17-22.
    • (2009) J Environ Health , vol.71 , pp. 17-22
    • Brooke, J.S.1    Annand, J.W.2    Hammer, A.3    Dembkowski, K.4    Shulman, S.T.5
  • 63
    • 0024669234 scopus 로고
    • Infectious complications in drug addicts: Seven-year review of 269 hospitalized narcotics abusers in Switzerland
    • Scheidegger C, Zimmerli W. 1989. Infectious complications in drug addicts: seven-year review of 269 hospitalized narcotics abusers in Switzerland. Rev Infect Dis 11:486-493. http://dx. doi. org/10. 1093/clinids/11 . 3. 486.
    • (1989) Rev Infect Dis , vol.11 , pp. 486-493
    • Scheidegger, C.1    Zimmerli, W.2
  • 65
    • 0030746910 scopus 로고    scopus 로고
    • Nasal carriage of Staphylococcus aureus: Epidemiology, underlying mechanisms, and associated risks
    • Kluytmans J, van Belkum A, Verbrugh H. 1997. Nasal carriage of Staphylococcus aureus: epidemiology, underlying mechanisms, and associated risks. Clin Microbiol Rev 10:505-520.
    • (1997) Clin Microbiol Rev , vol.10 , pp. 505-520
    • Kluytmans, J.1    Van Belkum, A.2    Verbrugh, H.3
  • 73
    • 84888867050 scopus 로고    scopus 로고
    • Structure and function of the human skin microbiome
    • Schommer NN, Gallo RL. 2013. Structure and function of the human skin microbiome. Trends Microbiol 21:660-668.
    • (2013) Trends Microbiol , vol.21 , pp. 660-668
    • Schommer, N.N.1    Gallo, R.L.2
  • 77
    • 34548696115 scopus 로고    scopus 로고
    • 16S rRNA gene sequencing for bacterial identification in the diagnostic laboratory: Pluses, perils, and pitfalls
    • Janda JM, Abbott SL. 2007. 16S rRNA gene sequencing for bacterial identification in the diagnostic laboratory: pluses, perils, and pitfalls. J Clin Microbiol 45:2761-2764. http://dx. doi. org/10. 1128/JCM. 01228-07.
    • (2007) J Clin Microbiol , vol.45 , pp. 2761-2764
    • Janda, J.M.1    Abbott, S.L.2
  • 78
    • 0030067991 scopus 로고    scopus 로고
    • Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
    • Suzuki MT, Giovannoni SJ. 1996. Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl Environ Microbiol 62:625-630.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 625-630
    • Suzuki, M.T.1    Giovannoni, S.J.2
  • 79
    • 84862631902 scopus 로고    scopus 로고
    • Selection of primers for optimal taxonomic classification of environmental 16S rRNA gene sequences
    • Soergel DAW, Dey N, Knight R, Brenner SE. 2012. Selection of primers for optimal taxonomic classification of environmental 16S rRNA gene sequences. ISME J 6:1440-1444. http://dx. doi. org/10. 1038/ismej. 2011 . 208.
    • (2012) ISME J , vol.6 , pp. 1440-1444
    • Soergel, D.A.W.1    Dey, N.2    Knight, R.3    Brenner, S.E.4
  • 80
    • 0034074410 scopus 로고    scopus 로고
    • RRNA operon copy number reflects ecological strategies of bacteria
    • Klappenbach JA, Dunbar JM, Schmidt TM. 2000. rRNA operon copy number reflects ecological strategies of bacteria. Appl Environ Microbiol 66:1328-1333. http://dx. doi. org/10. 1128/AEM. 66. 4. 1328-1333. 2000.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 1328-1333
    • Klappenbach, J.A.1    Dunbar, J.M.2    Schmidt, T.M.3
  • 81
    • 0030977047 scopus 로고    scopus 로고
    • The actinomycete Thermobispora bispora contains two distinct types of transcriptionally active 16S rRNA genes
    • Wang Y, Zhang Z, Ramanan N. 1997. The actinomycete Thermobispora bispora contains two distinct types of transcriptionally active 16S rRNA genes. J Bacteriol 179:3270-3276.
    • (1997) J Bacteriol , vol.179 , pp. 3270-3276
    • Wang, Y.1    Zhang, Z.2    Ramanan, N.3
  • 82
    • 0026585263 scopus 로고
    • How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity
    • Fox GE, Wisotzkey JD, Jurtshuk P, Jr. 1992. How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity. Int J Syst Bacteriol 42:166-170. http://dx. doi. org/10. 1099/00207713-42-1-166.
    • (1992) Int J Syst Bacteriol , vol.42 , pp. 166-170
    • Fox, G.E.1    Wisotzkey, J.D.2    Jurtshuk, P.3
  • 83
    • 0033515041 scopus 로고    scopus 로고
    • An Escherichia coli strain with all chromosomal rRNA operons inactivated: Complete exchange of rRNA genes between bacteria
    • Asai T, Zaporojets D, Squires C, Squires CL. 1999. An Escherichia coli strain with all chromosomal rRNA operons inactivated: complete exchange of rRNA genes between bacteria. Proc Natl Acad Sci U S A 96: 1971-1976. http://dx. doi. org/10. 1073/pnas. 96. 5. 1971.
    • (1999) Proc Natl Acad Sci U S A , vol.96 , pp. 1971-1976
    • Asai, T.1    Zaporojets, D.2    Squires, C.3    Squires, C.L.4
  • 84
    • 0344666688 scopus 로고    scopus 로고
    • Horizontal transfer of segments of the 16S rRNA genes between species of the Streptococcus anginosus group
    • Schouls LM, Schot CS, Jacobs JA. 2003. Horizontal transfer of segments of the 16S rRNA genes between species of the Streptococcus anginosus group. J Bacteriol 185:7241-7246. http://dx. doi. org/10. 1128/JB. 185. 24 . 7241-7246. 2003.
    • (2003) J Bacteriol , vol.185 , pp. 7241-7246
    • Schouls, L.M.1    Schot, C.S.2    Jacobs, J.A.3
  • 86
    • 23144435334 scopus 로고    scopus 로고
    • The multilocus sequence typing network: Mlst
    • Aanensen DM, Spratt BG. 2005. The multilocus sequence typing network: mlst. net. Nucleic Acids Res 33:W728-W733. http://dx. doi. org/10 . 1093/nar/gki415.
    • (2005) Net. Nucleic Acids Res , vol.33 , pp. W728-W733
    • Aanensen, D.M.1    Spratt, B.G.2
  • 87
    • 13244267001 scopus 로고    scopus 로고
    • MlstdbNet-distributed multi-locus sequence typing (MLST) databases
    • Jolley KA, Chan M-S, Maiden MCJ. 2004. mlstdbNet-distributed multi-locus sequence typing (MLST) databases. BMC Bioinformatics 5:86. http://dx. doi. org/10. 1186/1471-2105-5-86.
    • (2004) BMC Bioinformatics , vol.5 , pp. 86
    • Jolley, K.A.1    Chan, M.-S.2    Maiden, M.C.J.3
  • 88
    • 78650827616 scopus 로고    scopus 로고
    • BIGSdb: Scalable analysis of bacterial genome variation at the population level
    • Jolley KA, Maiden MCJ. 2010. BIGSdb: scalable analysis of bacterial genome variation at the population level. BMC Bioinformatics 11:595. http://dx. doi. org/10. 1186/1471-2105-11-595.
    • (2010) BMC Bioinformatics , vol.11 , pp. 595
    • Jolley, K.A.1    Maiden, M.C.J.2
  • 89
    • 84872686112 scopus 로고    scopus 로고
    • Massively parallel sequencing of enriched target amplicons for high-resolution genotyping of Salmonella serovars
    • Singh P, Foley SL, Nayak R, Kwon YM. 2013. Massively parallel sequencing of enriched target amplicons for high-resolution genotyping of Salmonella serovars. Mol Cell Probes 27:80-85. http://dx. doi. org/10 . 1016/j. mcp. 2012. 11. 004.
    • (2013) Mol Cell Probes , vol.27 , pp. 80-85
    • Singh, P.1    Foley, S.L.2    Nayak, R.3    Kwon, Y.M.4
  • 90
    • 83955165265 scopus 로고    scopus 로고
    • Multilocus sequence typing of Salmonella strains by high-throughput sequencing of selectively amplified target genes
    • Singh P, Foley SL, Nayak R, Kwon YM. 2012. Multilocus sequence typing of Salmonella strains by high-throughput sequencing of selectively amplified target genes. J Microbiol Methods 88:127-133. http://dx . doi. org/10. 1016/j. mimet. 2011. 11. 004.
    • (2012) J Microbiol Methods , vol.88 , pp. 127-133
    • Singh, P.1    Foley, S.L.2    Nayak, R.3    Kwon, Y.M.4
  • 91
    • 84866902363 scopus 로고    scopus 로고
    • Short read sequence typing (SRST): Multi-locus sequence types from short reads
    • Inouye M, Conway TC, Zobel J, Holt KE. 2012. Short read sequence typing (SRST): multi-locus sequence types from short reads. BMC Genomics 13:338. http://dx. doi. org/10. 1186/1471-2164-13-338.
    • (2012) BMC Genomics , vol.13 , pp. 338
    • Inouye, M.1    Conway, T.C.2    Zobel, J.3    Holt, K.E.4
  • 93
    • 4444308959 scopus 로고    scopus 로고
    • Anthrax molecular epidemiology and forensics: Using the appro-priate marker for different evolutionary scales
    • Keim P, Van Ert MN, Pearson T, Vogler AJ, Huynh LY, Wagner DM. 2004. Anthrax molecular epidemiology and forensics: using the appro-priate marker for different evolutionary scales. Infect Genet Evol 4:205-213. http://dx. doi. org/10. 1016/j. meegid. 2004. 02. 005.
    • (2004) Infect Genet Evol , vol.4 , pp. 205-213
    • Keim, P.1    Van Ert, M.N.2    Pearson, T.3    Vogler, A.J.4    Huynh, L.Y.5    Wagner, D.M.6
  • 96
    • 55649110049 scopus 로고    scopus 로고
    • A simple, fast, and accurate method of phylogenomic inference
    • Wu M, Eisen JA. 2008. A simple, fast, and accurate method of phylogenomic inference. Genome Biol 9:R151. http://dx. doi. org/10. 1186/gb-2008-9-10-r151.
    • (2008) Genome Biol , vol.9 , pp. R151
    • Wu, M.1    Eisen, J.A.2
  • 97
    • 79960869431 scopus 로고    scopus 로고
    • Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences
    • Liu B, Gibbons T, Ghodsi M, Treangen T, Pop M. 2011. Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences. BMC Genomics 12:S4. http://dx. doi. org/10. 1186/1471-2164-12-S2-S4.
    • (2011) BMC Genomics , vol.12 , pp. S4
    • Liu, B.1    Gibbons, T.2    Ghodsi, M.3    Treangen, T.4    Pop, M.5
  • 98
    • 84877788966 scopus 로고    scopus 로고
    • A phylum-level bacterial phylogenetic marker database
    • Wang Z, Wu M. 2013. A phylum-level bacterial phylogenetic marker database. Mol Biol Evol 30:1258-1262. http://dx. doi. org/10. 1093 /molbev/mst059.
    • (2013) Mol Biol Evol , vol.30 , pp. 1258-1262
    • Wang, Z.1    Wu, M.2
  • 99
    • 84885819796 scopus 로고    scopus 로고
    • Systematic identification of gene families for use as markers for phylogenetic and phylogeny-driven ecological studies of bacteria and archaea and their major subgroups
    • Wu D, Jospin G, Eisen JA. 2013. Systematic identification of gene families for use as markers for phylogenetic and phylogeny-driven ecological studies of bacteria and archaea and their major subgroups. PLoS One 8:e77033. http://dx. doi. org/10. 1371/journal. pone. 0077033.
    • (2013) PLoS One , vol.8 , pp. e77033
    • Wu, D.1    Jospin, G.2    Eisen, J.A.3
  • 100
    • 84895751645 scopus 로고    scopus 로고
    • PhyloSift: Phylogenetic analysis of genomes and metagenomes
    • Darling AE, Jospin G, Lowe E, Matsen FA, IV, Bik HM, Eisen JA. 2014. PhyloSift: phylogenetic analysis of genomes and metagenomes. PeerJ 2:e243. http://dx. doi. org/10. 7717/peerj. 243.
    • (2014) PeerJ , vol.2 , pp. e243
    • Darling, A.E.1    Jospin, G.2    Lowe, E.3    Matsen, F.A.4    Bik, H.M.5    Eisen, J.A.6
  • 101
    • 84883464181 scopus 로고    scopus 로고
    • Accurate and universal delineation of prokaryotic species
    • Mende DR, Sunagawa S, Zeller G, Bork P. 2013. Accurate and universal delineation of prokaryotic species. Nat Methods 10:881-884. http://dx . doi. org/10. 1038/nmeth. 2575.
    • (2013) Nat Methods , vol.10 , pp. 881-884
    • Mende, D.R.1    Sunagawa, S.2    Zeller, G.3    Bork, P.4
  • 106
    • 77954678952 scopus 로고    scopus 로고
    • Use of forensic methods under exigent circumstances without full validation
    • Schutzer SE, Keim P, Czerwinski K, Budowle B. 2009. Use of forensic methods under exigent circumstances without full validation. Sci Transl Med 1:8cm7.
    • (2009) Sci Transl Med , vol.1 , pp. 8cm7
    • Schutzer, S.E.1    Keim, P.2    Czerwinski, K.3    Budowle, B.4
  • 107
    • 84882894090 scopus 로고    scopus 로고
    • Microbial forensic investigation of the anthrax-letter attacks
    • In Budowle B, Schutzer SE, Breeze RG, Keim PS, Morse SA (ed),. Academic Press, Amsterdam, The Netherlands
    • Keim P, Budowle B, Ravel J. 2011. Microbial forensic investigation of the anthrax-letter attacks, p 15-25. In Budowle B, Schutzer SE, Breeze RG, Keim PS, Morse SA (ed), Microbial forensics, 2nd ed. Academic Press, Amsterdam, The Netherlands.
    • (2011) Microbial Forensics, 2nd Ed , pp. 15-25
    • Keim, P.1    Budowle, B.2    Ravel, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.