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Volumn 107, Issue 50, 2010, Pages 21242-21247

Source identification in two criminal cases using phylogenetic analysis of HIV-1 DNA sequences

Author keywords

Epidemiology; Evolution; Forensics; HIV transmission; Molecular; Phylogeny

Indexed keywords

ARTICLE; BLOOD SAMPLING; CONTROLLED STUDY; DNA SEQUENCE; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS 1; OFFENDER; PARAPHYLY; PHYLOGENY; PRIORITY JOURNAL; UNITED STATES; VIRUS IDENTIFICATION; VIRUS TRANSMISSION;

EID: 78650746800     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1015673107     Document Type: Article
Times cited : (78)

References (49)
  • 1
    • 5044225199 scopus 로고    scopus 로고
    • Encoded evidence: DNA in forensic analysis
    • Jobling MA, Gill P (2004) Encoded evidence: DNA in forensic analysis. Nat Rev Genet 5: 739-751.
    • (2004) Nat Rev Genet , vol.5 , pp. 739-751
    • Jobling, M.A.1    Gill, P.2
  • 3
    • 62849083222 scopus 로고    scopus 로고
    • The emerging role of nuclear architecture in DNA repair and genome maintenance
    • Misteli T, Soutoglou E (2009) The emerging role of nuclear architecture in DNA repair and genome maintenance. Nat Rev Mol Cell Biol 10:243-254.
    • (2009) Nat Rev Mol Cell Biol , vol.10 , pp. 243-254
    • Misteli, T.1    Soutoglou, E.2
  • 4
    • 0024267430 scopus 로고
    • Fidelity of HIV-1 reverse transcriptase
    • Preston BD, Poiesz BJ, Loeb LA (1988) Fidelity of HIV-1 reverse transcriptase. Science 242:1168-1171.
    • (1988) Science , vol.242 , pp. 1168-1171
    • Preston, B.D.1    Poiesz, B.J.2    Loeb, L.A.3
  • 5
    • 0026778009 scopus 로고
    • Unequal human immunodeficiency virus type 1 reverse transcriptase error rates with RNA and DNA templates
    • Boyer JC, Bebenek K, Kunkel TA (1992) Unequal human immunodeficiency virus type 1 reverse transcriptase error rates with RNA and DNA templates. Proc Natl Acad Sci USA 89:6919-6923.
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 6919-6923
    • Boyer, J.C.1    Bebenek, K.2    Kunkel, T.A.3
  • 6
    • 0029075130 scopus 로고
    • Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted fromthe fidelity of purified reverse transcriptase
    • Mansky LM, Temin HM (1995) Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted fromthe fidelity of purified reverse transcriptase. J Virol 69:5087-5094.
    • (1995) J Virol , vol.69 , pp. 5087-5094
    • Mansky, L.M.1    Temin, H.M.2
  • 7
    • 0036827628 scopus 로고    scopus 로고
    • Human immunodeficiency virus type 1 recombination: Rate, fidelity, and putative hot spots
    • Zhuang J, et al. (2002) Human immunodeficiency virus type 1 recombination: Rate, fidelity, and putative hot spots. J Virol 76:11273-11282.
    • (2002) J Virol , vol.76 , pp. 11273-11282
    • Zhuang, J.1
  • 8
    • 0037062939 scopus 로고    scopus 로고
    • Recombination: Multiply infected spleen cells in HIV patients
    • Jung A, et al. (2002) Recombination: Multiply infected spleen cells in HIV patients. Nature 418:144.
    • (2002) Nature , vol.418 , pp. 144
    • Jung, A.1
  • 9
    • 0141676563 scopus 로고    scopus 로고
    • High rates of human immunodeficiency virus type 1 recombination: Near-random segregation of markers one kilobase apart in one round of viral replication
    • Rhodes T, Wargo H, Hu W-S (2003) High rates of human immunodeficiency virus type 1 recombination: Near-random segregation of markers one kilobase apart in one round of viral replication. J Virol 77:11193-11200.
    • (2003) J Virol , vol.77 , pp. 11193-11200
    • Rhodes, T.1    Wargo, H.2    Hu, W.-S.3
  • 10
    • 0028811974 scopus 로고
    • Viral dynamics in human immunodeficiency virus type 1 infection
    • Wei X, et al. (1995) Viral dynamics in human immunodeficiency virus type 1 infection. Nature 373:117-122.
    • (1995) Nature , vol.373 , pp. 117-122
    • Wei, X.1
  • 11
    • 0028874048 scopus 로고
    • Rapid turnover of plasma virions and CD4 lymphocytes in HIV-1 infection
    • Ho DD, et al. (1995) Rapid turnover of plasma virions and CD4 lymphocytes in HIV-1 infection. Nature 373:123-126.
    • (1995) Nature , vol.373 , pp. 123-126
    • Ho, D.D.1
  • 12
    • 0029967721 scopus 로고    scopus 로고
    • HIV-1 dynamics in vivo: Virion clearance rate, infected cell life-span, and viral generation time
    • Perelson AS, Neumann AU, Markowitz M, Leonard JM, Ho DD (1996) HIV-1 dynamics in vivo: Virion clearance rate, infected cell life-span, and viral generation time. Science 271:1582-1586.
    • (1996) Science , vol.271 , pp. 1582-1586
    • Perelson, A.S.1    Neumann, A.U.2    Markowitz, M.3    Leonard, J.M.4    Ho, D.D.5
  • 13
    • 0028952146 scopus 로고
    • HIV population dynamics in vivo: Implications for genetic variation, pathogenesis, and therapy
    • Coffin JM (1995) HIV population dynamics in vivo: Implications for genetic variation, pathogenesis, and therapy. Science 267:483-489.
    • (1995) Science , vol.267 , pp. 483-489
    • Coffin, J.M.1
  • 15
    • 0026777199 scopus 로고
    • Molecular epidemiology of HIV transmission in a dental practice
    • Ou C-Y, et al. (1992) Molecular epidemiology of HIV transmission in a dental practice. Science 256:1165-1171.
    • (1992) Science , vol.256 , pp. 1165-1171
    • Ou, C.-Y.1
  • 16
    • 0028346264 scopus 로고
    • Support for dental HIV transmission
    • Hillis DM, Huelsenbeck JP (1994) Support for dental HIV transmission. Nature 369: 24-25.
    • (1994) Nature , vol.369 , pp. 24-25
    • Hillis, D.M.1    Huelsenbeck, J.P.2
  • 17
    • 0031958110 scopus 로고    scopus 로고
    • Molecular evidence for nosocomial transmission of human immunodeficiency virus from a surgeon to one of his patients
    • Blanchard A, Ferris S, Chamaret S, Guétard D, Montagnier L (1998) Molecular evidence for nosocomial transmission of human immunodeficiency virus from a surgeon to one of his patients. J Virol 72:4537-4540.
    • (1998) J Virol , vol.72 , pp. 4537-4540
    • Blanchard, A.1    Ferris, S.2    Chamaret, S.3    Guétard, D.4    Montagnier, L.5
  • 18
    • 0034048273 scopus 로고    scopus 로고
    • Phylogenetic analyses indicate an atypical nurse-to-patient transmission of human immunodeficiency virus type 1
    • Goujon CP, et al. (2000) Phylogenetic analyses indicate an atypical nurse-to-patient transmission of human immunodeficiency virus type 1. J Virol 74:2525-2532.
    • (2000) J Virol , vol.74 , pp. 2525-2532
    • Goujon, C.P.1
  • 19
    • 0028604415 scopus 로고
    • Lack of HIV transmission in the practice of a dentist with AIDS
    • Jaffe HW, et al. (1994) Lack of HIV transmission in the practice of a dentist with AIDS. Ann Intern Med 121:855-859.
    • (1994) Ann Intern Med , vol.121 , pp. 855-859
    • Jaffe, H.W.1
  • 20
    • 0027175227 scopus 로고
    • Molecular investigation of human immunodeficiency virus (HIV) infection in a patient of an HIVinfected surgeon
    • Holmes EC, Zhang LQ, Simmonds P, Rogers AS, Brown AJL (1993) Molecular investigation of human immunodeficiency virus (HIV) infection in a patient of an HIVinfected surgeon. J Infect Dis 167:1411-1414.
    • (1993) J Infect Dis , vol.167 , pp. 1411-1414
    • Holmes, E.C.1    Zhang, L.Q.2    Simmonds, P.3    Rogers, A.S.4    Brown, A.J.L.5
  • 21
    • 0029130259 scopus 로고
    • Sequence distances between env genes of HIV-1 from individuals infected from the same source: Implications for the investigation of possible transmission events
    • Arnold C, Balfe P, Clewley JP (1995) Sequence distances between env genes of HIV-1 from individuals infected from the same source: Implications for the investigation of possible transmission events. Virology 211:198-203.
    • (1995) Virology , vol.211 , pp. 198-203
    • Arnold, C.1    Balfe, P.2    Clewley, J.P.3
  • 22
    • 0028031329 scopus 로고
    • Analysis of a rape case by direct sequencing of the human immunodeficiency virus type 1 pol and gag genes
    • Albert J, Wahlberg J, Leitner T, Escanilla D, Uhlén M (1994) Analysis of a rape case by direct sequencing of the human immunodeficiency virus type 1 pol and gag genes. J Virol 68:5918-5924.
    • (1994) J Virol , vol.68 , pp. 5918-5924
    • Albert, J.1    Wahlberg, J.2    Leitner, T.3    Escanilla, D.4    Uhlén, M.5
  • 23
    • 0034449123 scopus 로고    scopus 로고
    • Reconstruction of HIV-1 transmission chains for forensic purposes
    • Leitner T, Albert J (2000) Reconstruction of HIV-1 transmission chains for forensic purposes. AIDS Rev 2:241-251.
    • (2000) AIDS Rev , vol.2 , pp. 241-251
    • Leitner, T.1    Albert, J.2
  • 24
    • 0033831613 scopus 로고    scopus 로고
    • Molecular analysis of human immunodeficiency virus strains associated with a case of criminal transmission of the virus
    • Birch CJ, et al. (2000) Molecular analysis of human immunodeficiency virus strains associated with a case of criminal transmission of the virus. J Infect Dis 182:941-944.
    • (2000) J Infect Dis , vol.182 , pp. 941-944
    • Birch, C.J.1
  • 25
    • 70349194918 scopus 로고    scopus 로고
    • Comparison of Bayesian and maximum-likelihood phylogenetic approaches in two legal cases involving accusations of transmission of HIV
    • Kaye M, Chibo D, Birch C (2009) Comparison of Bayesian and maximum-likelihood phylogenetic approaches in two legal cases involving accusations of transmission of HIV. AIDS Res Hum Retroviruses 25:741-748.
    • (2009) AIDS Res Hum Retroviruses , vol.25 , pp. 741-748
    • Kaye, M.1    Chibo, D.2    Birch, C.3
  • 26
    • 27144555816 scopus 로고    scopus 로고
    • Molecular testing of multiple HIV-1 transmissions in a criminal case
    • Lemey P, et al. (2005) Molecular testing of multiple HIV-1 transmissions in a criminal case. AIDS 19:1649-1658.
    • (2005) AIDS , vol.19 , pp. 1649-1658
    • Lemey, P.1
  • 27
    • 0034827865 scopus 로고    scopus 로고
    • Molecular investigation of transmission of human immunodeficiency virus type 1 in a criminal case
    • Machuca R, Jørgensen LB, Theilade P, Nielsen C (2001) Molecular investigation of transmission of human immunodeficiency virus type 1 in a criminal case. Clin Diagn Lab Immunol 8:884-890.
    • (2001) Clin Diagn Lab Immunol , vol.8 , pp. 884-890
    • MacHuca, R.1    Jørgensen, L.B.2    Theilade, P.3    Nielsen, C.4
  • 28
    • 0034450716 scopus 로고    scopus 로고
    • Human immunodeficiency virus type 1 infection after sexual abuse: Value of nucleic acid sequence analysis in identifying the offender
    • Banaschak S, Werwein M, Brinkmann B, Hauber I (2000) Human immunodeficiency virus type 1 infection after sexual abuse: Value of nucleic acid sequence analysis in identifying the offender. Clin Infect Dis 31:1098-1100.
    • (2000) Clin Infect Dis , vol.31 , pp. 1098-1100
    • Banaschak, S.1    Werwein, M.2    Brinkmann, B.3    Hauber, I.4
  • 29
    • 0035904623 scopus 로고    scopus 로고
    • Criminalisation of HIV transmission: Implications for public health in Scotland
    • Bird SM, Brown AJL (2001) Criminalisation of HIV transmission: Implications for public health in Scotland. BMJ 323:1174-1177.
    • (2001) BMJ , vol.323 , pp. 1174-1177
    • Bird, S.M.1    Brown, A.J.L.2
  • 30
    • 0037195104 scopus 로고    scopus 로고
    • Molecular evidence of HIV-1 transmission in a criminal case
    • Metzker ML, et al. (2002) Molecular evidence of HIV-1 transmission in a criminal case. Proc Natl Acad Sci USA 99:14292-14297.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 14292-14297
    • Metzker, M.L.1
  • 31
    • 0345569681 scopus 로고    scopus 로고
    • Inhibiting sexual transmission of HIV-1 infection
    • Shattock RJ, Moore JP (2003) Inhibiting sexual transmission of HIV-1 infection. Nat Rev Microbiol 1:25-34.
    • (2003) Nat Rev Microbiol , vol.1 , pp. 25-34
    • Shattock, R.J.1    Moore, J.P.2
  • 32
    • 44649102135 scopus 로고    scopus 로고
    • Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection
    • Keele BF, et al. (2008) Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection. Proc Natl Acad Sci USA 105: 7552-7557.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 7552-7557
    • Keele, B.F.1
  • 33
    • 59249096215 scopus 로고    scopus 로고
    • Inflammatory genital infections mitigate a severe genetic bottleneck in heterosexual transmission of subtype A and C HIV-1
    • Haaland RE, et al. (2009) Inflammatory genital infections mitigate a severe genetic bottleneck in heterosexual transmission of subtype A and C HIV-1. PLoS Pathog 5: e1000274.
    • (2009) PLoS Pathog , vol.5
    • Haaland, R.E.1
  • 34
    • 64049089430 scopus 로고    scopus 로고
    • Quantitating the multiplicity of infection with human immunodeficiency virus type 1 subtype C reveals a non-poisson distribution of transmitted variants
    • CAPRISA Acute Infection Study Team; Center for HIV-AIDS Vaccine Immunology Consortium
    • Abrahams MR, et al.; CAPRISA Acute Infection Study Team; Center for HIV-AIDS Vaccine Immunology Consortium (2009) Quantitating the multiplicity of infection with human immunodeficiency virus type 1 subtype C reveals a non-poisson distribution of transmitted variants. J Virol 83:3556-3567.
    • (2009) J Virol , vol.83 , pp. 3556-3567
    • Abrahams, M.R.1
  • 35
    • 67449163699 scopus 로고    scopus 로고
    • The effect of ambiguous data on phylogenetic estimates obtained by maximum likelihood and Bayesian inference
    • Lemmon AR, Brown JM, Stanger-Hall K, Lemmon EM (2009) The effect of ambiguous data on phylogenetic estimates obtained by maximum likelihood and Bayesian inference. Syst Biol 58:130-145.
    • (2009) Syst Biol , vol.58 , pp. 130-145
    • Lemmon, A.R.1    Brown, J.M.2    Stanger-Hall, K.3    Lemmon, E.M.4
  • 36
    • 44349167630 scopus 로고    scopus 로고
    • Legislation contagion: The spread of problematic new HIV laws in Western Africa
    • Pearshouse R (2007) Legislation contagion: The spread of problematic new HIV laws in Western Africa. HIV AIDS Policy Law Rev 12:1, 5-11.
    • (2007) HIV AIDS Policy Law Rev , vol.12 , Issue.1 , pp. 5-11
    • Pearshouse, R.1
  • 37
    • 71049122390 scopus 로고    scopus 로고
    • Ten reasons to oppose the criminalization of HIV exposure or transmission
    • Jürgens R, et al. (2009) Ten reasons to oppose the criminalization of HIV exposure or transmission. Reprod Health Matters 17:163-172.
    • (2009) Reprod Health Matters , vol.17 , pp. 163-172
    • Jürgens, R.1
  • 38
    • 71049147827 scopus 로고    scopus 로고
    • Available at, Accessed November 1, 2010
    • UNAIDS (2008) Criminalization of HIV transmission: Policy briefAvailable at http://data.unaids.org/pub/Manual/2008/jc1601-policy-brief-criminalization- long-en.pdf. Accessed November 1, 2010.
    • (2008) Criminalization of HIV Transmission: Policy Brief
  • 39
    • 78650726386 scopus 로고    scopus 로고
    • Available at, Accessed November 1, 2010
    • Family Health International (2008) AWARE-HIV/AIDS, 2003-2008 Closeout report. Available at http://www.fhi.org/en/CountryProfiles/WestAfrica/index.htm. Accessed November 1, 2010.
    • (2008) AWARE-HIV/AIDS, 2003-2008 Closeout Report
  • 40
    • 33749493282 scopus 로고    scopus 로고
    • Criminal prosecution for HIV transmission
    • Lowbury R, Kinghorn GR (2006) Criminal prosecution for HIV transmission. BMJ 333: 666-667.
    • (2006) BMJ , vol.333 , pp. 666-667
    • Lowbury, R.1    Kinghorn, G.R.2
  • 42
    • 48749123403 scopus 로고    scopus 로고
    • The case against criminalization of HIV transmission
    • Burris S, Cameron E (2008) The case against criminalization of HIV transmission. JAMA 300:578-581.
    • (2008) JAMA , vol.300 , pp. 578-581
    • Burris, S.1    Cameron, E.2
  • 43
    • 78650749597 scopus 로고    scopus 로고
    • Available at, Accessed November 1, 2010
    • Lamba Legal (2010) State criminal statutes on HIV exposure. Available at http://www.lambdalegal.org/our-work/publications/general/state-criminal- statutes-hiv.html. Accessed November 1, 2010.
    • (2010) State Criminal Statutes on HIV Exposure
  • 44
    • 0031670813 scopus 로고    scopus 로고
    • Quantitation of mixed-base populations of HIV-1 variants by automated DNA sequencing with BODIPY dye-labeled primers
    • 450-452, 454 passim
    • Metzker ML, Ansari-Lari MA, Liu X-M, Holder DJ, Gibbs RA (1998) Quantitation of mixed-base populations of HIV-1 variants by automated DNA sequencing with BODIPY dye-labeled primers. Biotechniques 25:446-447, 450-452, 454 passim.
    • (1998) Biotechniques , vol.25 , pp. 446-447
    • Metzker, M.L.1    Ansari-Lari, M.A.2    Liu, X.-M.3    Holder, D.J.4    Gibbs, R.A.5
  • 45
    • 28844463698 scopus 로고    scopus 로고
    • Emerging technologies in DNA sequencing
    • Metzker ML (2005) Emerging technologies in DNA sequencing. Genome Res 15: 1767-1776.
    • (2005) Genome Res , vol.15 , pp. 1767-1776
    • Metzker, M.L.1
  • 49
    • 37249003697 scopus 로고    scopus 로고
    • The importance of data partitioning and the utility of Bayes factors in Bayesian phylogenetics
    • Brown JM, Lemmon AR (2007) The importance of data partitioning and the utility of Bayes factors in Bayesian phylogenetics. Syst Biol 56:643-655.
    • (2007) Syst Biol , vol.56 , pp. 643-655
    • Brown, J.M.1    Lemmon, A.R.2


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