메뉴 건너뛰기




Volumn 1, Issue 1, 2010, Pages

Accurate, rapid and high-throughput detection of strain-specific polymorphisms in Bacillus anthracis and Yersinia pestis by next-generation sequencing

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEOTIDE;

EID: 79953868820     PISSN: None     EISSN: 20412223     Source Type: Journal    
DOI: 10.1186/2041-2223-1-5     Document Type: Article
Times cited : (37)

References (35)
  • 2
    • 0037076771 scopus 로고    scopus 로고
    • Genomics and microbiology. Microbial forensics--"cross-examining pathogens"
    • 10.1126/science.1073125, 12004075
    • Cummings CA, Relman DA. Genomics and microbiology. Microbial forensics--"cross-examining pathogens". Science 2002, 296:1976-1979. 10.1126/science.1073125, 12004075.
    • (2002) Science , vol.296 , pp. 1976-1979
    • Cummings, C.A.1    Relman, D.A.2
  • 3
    • 77951633269 scopus 로고    scopus 로고
    • Amerithrax Investigation Court Documents
    • Amerithrax Investigation Court Documents. , http://www.fbi.gov/page2/august08/amerithrax_docs080608.html
  • 7
    • 77954678952 scopus 로고    scopus 로고
    • Use of forensic methods under exigent circumstances without full validation
    • Schutzer SE, Keim P, Czerwinski K, Budowle B. Use of forensic methods under exigent circumstances without full validation. Sci Transl Med 2009, 1:8cm7.
    • (2009) Sci Transl Med , vol.1
    • Schutzer, S.E.1    Keim, P.2    Czerwinski, K.3    Budowle, B.4
  • 8
    • 63249121217 scopus 로고    scopus 로고
    • Application of 'next-generation' sequencing technologies to microbial genetics
    • MacLean D, Jones JD, Studholme DJ. Application of 'next-generation' sequencing technologies to microbial genetics. Nat Rev Microbiol 2009, 7:287-296.
    • (2009) Nat Rev Microbiol , vol.7 , pp. 287-296
    • MacLean, D.1    Jones, J.D.2    Studholme, D.J.3
  • 9
    • 39649117755 scopus 로고    scopus 로고
    • The impact of next-generation sequencing technology on genetics
    • Mardis ER. The impact of next-generation sequencing technology on genetics. Trends Genet 2008, 24:133-141.
    • (2008) Trends Genet , vol.24 , pp. 133-141
    • Mardis, E.R.1
  • 10
    • 0034020175 scopus 로고    scopus 로고
    • Multiple-locus variable-number tandem repeat analysis reveals genetic relationships within Bacillus anthracis
    • 10.1128/JB.182.10.2928-2936.2000, 102004, 10781564
    • Keim P, Price LB, Klevytska AM, Smith KL, Schupp JM, Okinaka R, Jackson PJ, Hugh-Jones ME. Multiple-locus variable-number tandem repeat analysis reveals genetic relationships within Bacillus anthracis. J Bacteriol 2000, 182:2928-2936. 10.1128/JB.182.10.2928-2936.2000, 102004, 10781564.
    • (2000) J Bacteriol , vol.182 , pp. 2928-2936
    • Keim, P.1    Price, L.B.2    Klevytska, A.M.3    Smith, K.L.4    Schupp, J.M.5    Okinaka, R.6    Jackson, P.J.7    Hugh-Jones, M.E.8
  • 11
    • 4444308959 scopus 로고    scopus 로고
    • Anthrax molecular epidemiology and forensics: using the appropriate marker for different evolutionary scales
    • 10.1016/j.meegid.2004.02.005, 15450200
    • Keim P, Van Ert MN, Pearson T, Vogler AJ, Huynh LY, Wagner DM. Anthrax molecular epidemiology and forensics: using the appropriate marker for different evolutionary scales. Infect Genet Evol 2004, 4:205-213. 10.1016/j.meegid.2004.02.005, 15450200.
    • (2004) Infect Genet Evol , vol.4 , pp. 205-213
    • Keim, P.1    Van Ert, M.N.2    Pearson, T.3    Vogler, A.J.4    Huynh, L.Y.5    Wagner, D.M.6
  • 15
    • 0026774809 scopus 로고
    • Loss of the pigmentation phenotype in Yersinia pestis is due to the spontaneous deletion of 102 kb of chromosomal DNA which is flanked by a repetitive element
    • 10.1111/j.1365-2958.1992.tb01446.x, 1447977
    • Fetherston JD, Schuetze P, Perry RD. Loss of the pigmentation phenotype in Yersinia pestis is due to the spontaneous deletion of 102 kb of chromosomal DNA which is flanked by a repetitive element. Mol Microbiol 1992, 6:2693-2704. 10.1111/j.1365-2958.1992.tb01446.x, 1447977.
    • (1992) Mol Microbiol , vol.6 , pp. 2693-2704
    • Fetherston, J.D.1    Schuetze, P.2    Perry, R.D.3
  • 16
    • 0028106773 scopus 로고
    • The pigmentation locus of Yersinia pestis KIM6+ is flanked by an insertion sequence and includes the structural genes for pesticin sensitivity and HMWP2
    • 10.1111/j.1365-2958.1994.tb00463.x, 7997181
    • Fetherston JD, Perry RD. The pigmentation locus of Yersinia pestis KIM6+ is flanked by an insertion sequence and includes the structural genes for pesticin sensitivity and HMWP2. Mol Microbiol 1994, 13:697-708. 10.1111/j.1365-2958.1994.tb00463.x, 7997181.
    • (1994) Mol Microbiol , vol.13 , pp. 697-708
    • Fetherston, J.D.1    Perry, R.D.2
  • 17
    • 0031977363 scopus 로고    scopus 로고
    • The 102-kilobase unstable region of Yersinia pestis comprises a high-pathogenicity island linked to a pigmentation segment which undergoes internal rearrangement
    • 107171, 9573181
    • Buchrieser C, Prentice M, Carniel E. The 102-kilobase unstable region of Yersinia pestis comprises a high-pathogenicity island linked to a pigmentation segment which undergoes internal rearrangement. J Bacteriol 1998, 180:2321-2329. 107171, 9573181.
    • (1998) J Bacteriol , vol.180 , pp. 2321-2329
    • Buchrieser, C.1    Prentice, M.2    Carniel, E.3
  • 18
    • 67651149484 scopus 로고    scopus 로고
    • Phylogenetic understanding of clonal populations in an era of whole genome sequencing
    • 10.1016/j.meegid.2009.05.014, 19477301
    • Pearson T, Okinaka RT, Foster JT, Keim P. Phylogenetic understanding of clonal populations in an era of whole genome sequencing. Infect Genet Evol 2009, 9:1010-9. 10.1016/j.meegid.2009.05.014, 19477301.
    • (2009) Infect Genet Evol , vol.9 , pp. 1010-1019
    • Pearson, T.1    Okinaka, R.T.2    Foster, J.T.3    Keim, P.4
  • 20
    • 33744988507 scopus 로고    scopus 로고
    • Age, descent and genetic diversity within Yersinia pestis
    • Norwich, UK: Horizon Bioscience, Carniel E, Hinnebusch BJ
    • Achtman M. Age, descent and genetic diversity within Yersinia pestis. Yersinia: Molecular and Cellular Biology 2004, 432. Norwich, UK: Horizon Bioscience, Carniel E, Hinnebusch BJ.
    • (2004) Yersinia: Molecular and Cellular Biology , pp. 432
    • Achtman, M.1
  • 21
    • 0033598784 scopus 로고    scopus 로고
    • Yersinia pestis, the cause of plague, is a recently emerged clone of Yersinia pseudotuberculosis
    • 10.1073/pnas.96.24.14043, 24187, 10570195
    • Achtman M, Zurth K, Morelli G, Torrea G, Guiyoule A, Carniel E. Yersinia pestis, the cause of plague, is a recently emerged clone of Yersinia pseudotuberculosis. Proc Natl Acad Sci USA 1999, 96:14043-14048. 10.1073/pnas.96.24.14043, 24187, 10570195.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 14043-14048
    • Achtman, M.1    Zurth, K.2    Morelli, G.3    Torrea, G.4    Guiyoule, A.5    Carniel, E.6
  • 22
    • 70350185397 scopus 로고    scopus 로고
    • Humans and evolutionary and ecological forces shaped the phylogeography of recently emerged diseases
    • 10.1038/nrmicro2219, 2794044, 19820723
    • Keim PS, Wagner DM. Humans and evolutionary and ecological forces shaped the phylogeography of recently emerged diseases. Nat Rev Microbiol 2009, 7:813-821. 10.1038/nrmicro2219, 2794044, 19820723.
    • (2009) Nat Rev Microbiol , vol.7 , pp. 813-821
    • Keim, P.S.1    Wagner, D.M.2
  • 26
    • 70350641005 scopus 로고    scopus 로고
    • Genome evolution and adaptation in a long-term experiment with Escherichia coli
    • 10.1038/nature08480, 19838166
    • Barrick JE, Yu DS, Yoon SH, Jeong H, Oh TK, Schneider D, Lenski RE, Kim JF. Genome evolution and adaptation in a long-term experiment with Escherichia coli. Nature 2009, 461:1243-1247. 10.1038/nature08480, 19838166.
    • (2009) Nature , vol.461 , pp. 1243-1247
    • Barrick, J.E.1    Yu, D.S.2    Yoon, S.H.3    Jeong, H.4    Oh, T.K.5    Schneider, D.6    Lenski, R.E.7    Kim, J.F.8
  • 29
    • 77957746208 scopus 로고    scopus 로고
    • Genome-wide Mutational Diversity in an Evolving Population of Escherichia coli
    • 2890043, 19776167
    • Barrick JE, Lenski RE. Genome-wide Mutational Diversity in an Evolving Population of Escherichia coli. Cold Spring Harb Symp Quant Biol 2009, 2890043, 19776167.
    • (2009) Cold Spring Harb Symp Quant Biol
    • Barrick, J.E.1    Lenski, R.E.2
  • 30
    • 68549098191 scopus 로고    scopus 로고
    • Detecting SNPs and estimating allele frequencies in clonal bacterial populations by sequencing pooled DNA
    • 10.1093/bioinformatics/btp344, 2722999, 19497932
    • Holt KE, Teo YY, Li H, Nair S, Dougan G, Wain J, Parkhill J. Detecting SNPs and estimating allele frequencies in clonal bacterial populations by sequencing pooled DNA. Bioinformatics 2009, 25:2074-2075. 10.1093/bioinformatics/btp344, 2722999, 19497932.
    • (2009) Bioinformatics , vol.25 , pp. 2074-2075
    • Holt, K.E.1    Teo, Y.Y.2    Li, H.3    Nair, S.4    Dougan, G.5    Wain, J.6    Parkhill, J.7
  • 33
    • 42149098833 scopus 로고    scopus 로고
    • High resolution genotyping of Bacillus anthracis outbreak strains using four highly mutable single nucleotide repeat markers
    • 10.1111/j.1472-765X.2008.02353.x, 18363651
    • Kenefic LJ, Beaudry J, Trim C, Daly R, Parmar R, Zanecki S, Huynh L, Van Ert MN, Wagner DM, Graham T, Keim P. High resolution genotyping of Bacillus anthracis outbreak strains using four highly mutable single nucleotide repeat markers. Lett Appl Microbiol 2008, 46:600-603. 10.1111/j.1472-765X.2008.02353.x, 18363651.
    • (2008) Lett Appl Microbiol , vol.46 , pp. 600-603
    • Kenefic, L.J.1    Beaudry, J.2    Trim, C.3    Daly, R.4    Parmar, R.5    Zanecki, S.6    Huynh, L.7    Van Ert, M.N.8    Wagner, D.M.9    Graham, T.10    Keim, P.11
  • 35
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2ΔΔCt Method
    • 10.1006/meth.2001.1262, 11846609
    • Livak KJ, Schmittgen TD. Analysis of relative gene expression data using real-time quantitative PCR and the 2ΔΔCt Method. Methods 2001, 25:402-408. 10.1006/meth.2001.1262, 11846609.
    • (2001) Methods , vol.25 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.