-
1
-
-
84925229458
-
Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution
-
PMID: 25470049
-
Eirew P, Steif A, Khattra J, Ha G, Yap D, Farahani H, et al. Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution. Nature. 2014. doi: 10.1038/nature13952 PMID: 25470049.
-
(2014)
Nature
-
-
Eirew, P.1
Steif, A.2
Khattra, J.3
Ha, G.4
Yap, D.5
Farahani, H.6
-
3
-
-
84856013431
-
Clonal evolution in cancer
-
PMID: 22258609; PubMed Central PMCID: PMC3367003
-
Greaves M, Maley CC. Clonal evolution in cancer. Nature. 2012; 481(7381):306-13. doi: 10.1038/nature10762 PMID: 22258609; PubMed Central PMCID: PMC3367003.
-
(2012)
Nature
, vol.481
, Issue.7381
, pp. 306-313
-
-
Greaves, M.1
Maley, C.C.2
-
4
-
-
84863229772
-
Single-cell exome sequencing and monoclonal evolution of a JAK2-negative myeloproliferative neoplasm
-
PMID: 22385957
-
Hou Y, Song L, Zhu P, Zhang B, Tao Y, Xu X, et al. Single-cell exome sequencing and monoclonal evolution of a JAK2-negative myeloproliferative neoplasm. Cell. 2012; 148(5):873-85. doi: 10.1016/j.cell.2012.02.028 PMID: 22385957.
-
(2012)
Cell
, vol.148
, Issue.5
, pp. 873-885
-
-
Hou, Y.1
Song, L.2
Zhu, P.3
Zhang, B.4
Tao, Y.5
Xu, X.6
-
5
-
-
84887315590
-
Mosaic copy number variation in human neurons
-
PMID: 24179226; PubMed Central PMCID: PMC3975283
-
McConnell MJ, Lindberg MR, Brennand KJ, Piper JC, Voet T, Cowing-Zitron C, et al. Mosaic copy number variation in human neurons. Science. 2013; 342(6158):632-7. doi: 10.1126/science.1243472 PMID: 24179226; PubMed Central PMCID: PMC3975283.
-
(2013)
Science
, vol.342
, Issue.6158
, pp. 632-637
-
-
McConnell, M.J.1
Lindberg, M.R.2
Brennand, K.J.3
Piper, J.C.4
Voet, T.5
Cowing-Zitron, C.6
-
6
-
-
84905690692
-
Single-cell genetic analysis reveals the composition of initiating clones and phylogenetic patterns of branching and parallel evolution in myeloma
-
PMID: 24480973
-
Melchor L, Brioli A, Wardell CP, Murison A, Potter NE, Kaiser MF, et al. Single-cell genetic analysis reveals the composition of initiating clones and phylogenetic patterns of branching and parallel evolution in myeloma. Leukemia. 2014; 28(8):1705-15. doi: 10.1038/leu.2014.13 PMID: 24480973.
-
(2014)
Leukemia
, vol.28
, Issue.8
, pp. 1705-1715
-
-
Melchor, L.1
Brioli, A.2
Wardell, C.P.3
Murison, A.4
Potter, N.E.5
Kaiser, M.F.6
-
7
-
-
79953766940
-
Tumour evolution inferred by single-cell sequencing
-
PMID: 21399628
-
Navin N, Kendall J, Troge J, Andrews P, Rodgers L, McIndoo J, et al. Tumour evolution inferred by single-cell sequencing. Nature. 2011; 472(7341):90-4. doi: 10.1038/nature09807 PMID: 21399628.
-
(2011)
Nature
, vol.472
, Issue.7341
, pp. 90-94
-
-
Navin, N.1
Kendall, J.2
Troge, J.3
Andrews, P.4
Rodgers, L.5
McIndoo, J.6
-
8
-
-
84891354380
-
Reproducible copy number variation patterns among single circulating tumor cells of lung cancer patients
-
PMID: 24324171; PubMed Central PMCID: PMC3876226
-
Ni X, Zhuo M, Su Z, Duan J, Gao Y, Wang Z, et al. Reproducible copy number variation patterns among single circulating tumor cells of lung cancer patients. Proceedings of the National Academy of Sciences of the United States of America. 2013; 110(52):21083-8. doi: 10.1073/pnas.1320659110 PMID: 24324171; PubMed Central PMCID: PMC3876226.
-
(2013)
Proceedings of the National Academy of Sciences of the United States of America
, vol.110
, Issue.52
, pp. 21083-21088
-
-
Ni, X.1
Zhuo, M.2
Su, Z.3
Duan, J.4
Gao, Y.5
Wang, Z.6
-
9
-
-
84890485711
-
Single-cell mutational profiling and clonal phylogeny in cancer
-
PMID: 24056532; PubMed Central PMCID: PMC3847780
-
Potter NE, Ermini L, Papaemmanuil E, Cazzaniga G, Vijayaraghavan G, Titley I, et al. Single-cell mutational profiling and clonal phylogeny in cancer. Genome research. 2013; 23(12):2115-25. doi: 10.1101/gr.159913.113 PMID: 24056532; PubMed Central PMCID: PMC3847780.
-
(2013)
Genome Research
, vol.23
, Issue.12
, pp. 2115-2125
-
-
Potter, N.E.1
Ermini, L.2
Papaemmanuil, E.3
Cazzaniga, G.4
Vijayaraghavan, G.5
Titley, I.6
-
10
-
-
84862526929
-
The clonal and mutational evolution spectrum of primary triple-negative breast cancers
-
PMID: 22495314; PubMed Central PMCID: PMC3863681
-
Shah SP, Roth A, Goya R, Oloumi A, Ha G, Zhao Y, et al. The clonal and mutational evolution spectrum of primary triple-negative breast cancers. Nature. 2012; 486(7403):395-9. doi: 10.1038/nature10933 PMID: 22495314; PubMed Central PMCID: PMC3863681.
-
(2012)
Nature
, vol.486
, Issue.7403
, pp. 395-399
-
-
Shah, S.P.1
Roth, A.2
Goya, R.3
Oloumi, A.4
Ha, G.5
Zhao, Y.6
-
11
-
-
84906238686
-
Clonal evolution in breast cancer revealed by single nucleus genome sequencing
-
PMID: 25079324; PubMed Central PMCID: PMC4158312
-
Wang Y, Waters J, Leung ML, Unruh A, Roh W, Shi X, et al. Clonal evolution in breast cancer revealed by single nucleus genome sequencing. Nature. 2014; 512(7513):155-60. doi: 10.1038/nature13600 PMID: 25079324; PubMed Central PMCID: PMC4158312.
-
(2014)
Nature
, vol.512
, Issue.7513
, pp. 155-160
-
-
Wang, Y.1
Waters, J.2
Leung, M.L.3
Unruh, A.4
Roh, W.5
Shi, X.6
-
12
-
-
84863230091
-
Single-cell exome sequencing reveals single-nucleotide mutation characteristics of a kidney tumor
-
PMID: 22385958
-
Xu X, Hou Y, Yin X, Bao L, Tang A, Song L, et al. Single-cell exome sequencing reveals single-nucleotide mutation characteristics of a kidney tumor. Cell. 2012; 148(5):886-95. doi: 10.1016/j.cell.2012.02.025 PMID: 22385958.
-
(2012)
Cell
, vol.148
, Issue.5
, pp. 886-895
-
-
Xu, X.1
Hou, Y.2
Yin, X.3
Bao, L.4
Tang, A.5
Song, L.6
-
13
-
-
84871461434
-
Genome-wide detection of single-nucleotide and copy-number variations of a single human cell
-
PMID: 23258894; PubMed Central PMCID: PMC3600412
-
Zong C, Lu S, Chapman AR, Xie XS. Genome-wide detection of single-nucleotide and copy-number variations of a single human cell. Science. 2012; 338(6114):1622-6. doi: 10.1126/science.1229164 PMID: 23258894; PubMed Central PMCID: PMC3600412.
-
(2012)
Science
, vol.338
, Issue.6114
, pp. 1622-1626
-
-
Zong, C.1
Lu, S.2
Chapman, A.R.3
Xie, X.S.4
-
14
-
-
33947101019
-
Patterns of somatic mutation in human cancer genomes
-
PMID: 17344846; PubMed Central PMCID: PMC2712719
-
Greenman C, Stephens P, Smith R, Dalgliesh GL, Hunter C, Bignell G, et al. Patterns of somatic mutation in human cancer genomes. Nature. 2007; 446(7132):153-8. doi: 10.1038/nature05610 PMID: 17344846; PubMed Central PMCID: PMC2712719.
-
(2007)
Nature
, vol.446
, Issue.7132
, pp. 153-158
-
-
Greenman, C.1
Stephens, P.2
Smith, R.3
Dalgliesh, G.L.4
Hunter, C.5
Bignell, G.6
-
15
-
-
84892833777
-
Discovery and saturation analysis of cancer genes across 21 tumour types
-
PMID: 24390350; PubMed Central PMCID: PMC4048962
-
Lawrence MS, Stojanov P, Mermel CH, Robinson JT, Garraway LA, Golub TR, et al. Discovery and saturation analysis of cancer genes across 21 tumour types. Nature. 2014; 505(7484):495-501. doi: 10.1038/nature12912 PMID: 24390350; PubMed Central PMCID: PMC4048962.
-
(2014)
Nature
, vol.505
, Issue.7484
, pp. 495-501
-
-
Lawrence, M.S.1
Stojanov, P.2
Mermel, C.H.3
Robinson, J.T.4
Garraway, L.A.5
Golub, T.R.6
-
16
-
-
84890055556
-
Massively parallel polymerase cloning and genome sequencing of single cells using nanoliter microwells
-
PMID: 24213699; PubMed Central PMCID: PMC3875318
-
Gole J, Gore A, Richards A, Chiu YJ, Fung HL, Bushman D, et al. Massively parallel polymerase cloning and genome sequencing of single cells using nanoliter microwells. Nature biotechnology. 2013; 31 (12):1126-32. doi: 10.1038/nbt.2720 PMID: 24213699; PubMed Central PMCID: PMC3875318.
-
(2013)
Nature Biotechnology
, vol.31
, Issue.12
, pp. 1126-1132
-
-
Gole, J.1
Gore, A.2
Richards, A.3
Chiu, Y.J.4
Fung, H.L.5
Bushman, D.6
-
17
-
-
0034615958
-
Monolithic microfabricated valves and pumps by multilayer soft lithography
-
PMID: 10753110
-
Unger MA, Chou HP, Thorsen T, Scherer A, Quake SR. Monolithic microfabricated valves and pumps by multilayer soft lithography. Science. 2000; 288(5463):113-6. PMID: 10753110.
-
(2000)
Science
, vol.288
, Issue.5463
, pp. 113-116
-
-
Unger, M.A.1
Chou, H.P.2
Thorsen, T.3
Scherer, A.4
Quake, S.R.5
-
18
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
PMID: 22388286; PubMed Central PMCID: PMC3322381
-
Langmead B, Salzberg SL. Fast gapped-read alignment with Bowtie 2. Nature methods. 2012; 9 (4):357-9. doi: 10.1038/nmeth.1923 PMID: 22388286; PubMed Central PMCID: PMC3322381.
-
(2012)
Nature Methods
, vol.9
, Issue.4
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
19
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
PMID: 19261174; PubMed Central PMCID: PMC2690996
-
Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome biology. 2009; 10(3):R25. doi: 10.1186/gb-2009-10-3-r25 PMID: 19261174; PubMed Central PMCID: PMC2690996.
-
(2009)
Genome Biology
, vol.10
, Issue.3
, pp. R25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
20
-
-
77956295988
-
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
-
PMID: 20644199; PubMed Central PMCID: PMC2928508
-
McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome research. 2010; 20(9):1297-303. doi: 10.1101/gr.107524.110 PMID: 20644199; PubMed Central PMCID: PMC2928508.
-
(2010)
Genome Research
, vol.20
, Issue.9
, pp. 1297-1303
-
-
McKenna, A.1
Hanna, M.2
Banks, E.3
Sivachenko, A.4
Cibulskis, K.5
Kernytsky, A.6
-
21
-
-
77951770756
-
BEDTools: A flexible suite of utilities for comparing genomic features
-
PMID: 20110278; PubMed Central PMCID: PMC2832824
-
Quinlan AR, Hall IM. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics. 2010; 26(6):841-2. doi: 10.1093/bioinformatics/btq033 PMID: 20110278; PubMed Central PMCID: PMC2832824.
-
(2010)
Bioinformatics
, vol.26
, Issue.6
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
22
-
-
84920645442
-
A quantitative comparison of single-cell whole genome amplification methods
-
PMID: 25136831; PubMed Central PMCID: PMC4138190
-
de Bourcy CF, De Vlaminck I, Kanbar JN, Wang J, Gawad C, Quake SR. A quantitative comparison of single-cell whole genome amplification methods. PloS one. 2014; 9(8):e105585. doi: 10.1371/journal.pone.0105585 PMID: 25136831; PubMed Central PMCID: PMC4138190.
-
(2014)
PloS One
, vol.9
, Issue.8
, pp. e105585
-
-
De Bourcy, C.F.1
De Vlaminck, I.2
Kanbar, J.N.3
Wang, J.4
Gawad, C.5
Quake, S.R.6
-
23
-
-
55749114787
-
A procedure for highly specific, sensitive, and unbiased whole-genome amplification
-
PMID: 18832167; PubMed Central PMCID: PMC2563063
-
Pan X, Urban AE, Palejev D, Schulz V, Grubert F, Hu Y, et al. A procedure for highly specific, sensitive, and unbiased whole-genome amplification. Proceedings of the National Academy of Sciences of the United States of America. 2008; 105(40):15499-504. doi: 10.1073/pnas.0808028105 PMID: 18832167; PubMed Central PMCID: PMC2563063.
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.40
, pp. 15499-15504
-
-
Pan, X.1
Urban, A.E.2
Palejev, D.3
Schulz, V.4
Grubert, F.5
Hu, Y.6
-
24
-
-
34548441098
-
Architectures of somatic genomic rearrangement in human cancer amplicons at sequence-level resolution
-
PMID: 17675364; PubMed Central PMCID: PMC1950898
-
Bignell GR, Santarius T, Pole JC, Butler AP, Perry J, Pleasance E, et al. Architectures of somatic genomic rearrangement in human cancer amplicons at sequence-level resolution. Genome research. 2007; 17(9):1296-303. doi: 10.1101/gr.6522707 PMID: 17675364; PubMed Central PMCID: PMC1950898.
-
(2007)
Genome Research
, vol.17
, Issue.9
, pp. 1296-1303
-
-
Bignell, G.R.1
Santarius, T.2
Pole, J.C.3
Butler, A.P.4
Perry, J.5
Pleasance, E.6
-
25
-
-
84891785390
-
CanSAR: Updated cancer research and drug discovery knowledgebase
-
PMID: 24304894; PubMed Central PMCID: PMC3964944
-
Bulusu KC, Tym JE, Coker EA, Schierz AC, Al-Lazikani B. canSAR: updated cancer research and drug discovery knowledgebase. Nucleic acids research. 2014; 42(Database issue):D1040-7. doi: 10.1093/nar/gkt1182 PMID: 24304894; PubMed Central PMCID: PMC3964944.
-
(2014)
Nucleic Acids Research
, vol.42
, Issue.DATABASE ISSUE
, pp. D1040-D1047
-
-
Bulusu, K.C.1
Tym, J.E.2
Coker, E.A.3
Schierz, A.C.4
Al-Lazikani, B.5
-
26
-
-
84900333051
-
Wholeexome sequencing of circulating tumor cells provides a window into metastatic prostate cancer
-
PMID: 24752078; PubMed Central PMCID: PMC4034575
-
Lohr JG, Adalsteinsson VA, Cibulskis K, Choudhury AD, Rosenberg M, Cruz-Gordillo P, et al. Wholeexome sequencing of circulating tumor cells provides a window into metastatic prostate cancer. Nature biotechnology. 2014; 32(5):479-84. doi: 10.1038/nbt.2892 PMID: 24752078; PubMed Central PMCID: PMC4034575.
-
(2014)
Nature Biotechnology
, vol.32
, Issue.5
, pp. 479-484
-
-
Lohr, J.G.1
Adalsteinsson, V.A.2
Cibulskis, K.3
Choudhury, A.D.4
Rosenberg, M.5
Cruz-Gordillo, P.6
-
27
-
-
84856080112
-
Feature-based classifiers for somatic mutation detection in tumour-normal paired sequencing data
-
PMID: 22084253; PubMed Central PMCID: PMC3259434
-
Ding J, Bashashati A, Roth A, Oloumi A, Tse K, Zeng T, et al. Feature-based classifiers for somatic mutation detection in tumour-normal paired sequencing data. Bioinformatics. 2012; 28(2):167-75. doi: 10.1093/bioinformatics/btr629 PMID: 22084253; PubMed Central PMCID: PMC3259434.
-
(2012)
Bioinformatics
, vol.28
, Issue.2
, pp. 167-175
-
-
Ding, J.1
Bashashati, A.2
Roth, A.3
Oloumi, A.4
Tse, K.5
Zeng, T.6
-
28
-
-
84897954204
-
PyClone: Statistical inference of clonal population structure in cancer
-
PMID: 24633410
-
Roth A, Khattra J, Yap D, Wan A, Laks E, Biele J, et al. PyClone: statistical inference of clonal population structure in cancer. Nature methods. 2014; 11(4):396-8. doi: 10.1038/nmeth.2883 PMID: 24633410.
-
(2014)
Nature Methods
, vol.11
, Issue.4
, pp. 396-398
-
-
Roth, A.1
Khattra, J.2
Yap, D.3
Wan, A.4
Laks, E.5
Biele, J.6
-
29
-
-
84975742565
-
A map of human genome variation from population-scale sequencing
-
1000 Genomes Project Consortium, PMID: 20981092; PubMed Central PMCID: PMC3042601
-
1000 Genomes Project Consortium, Abecasis GR, Altshuler D, Auton A, Brooks LD, Durbin RM, et al. A map of human genome variation from population-scale sequencing. Nature. 2010; 467(7319):1061-73. doi: 10.1038/nature09534 PMID: 20981092; PubMed Central PMCID: PMC3042601.
-
(2010)
Nature
, vol.467
, Issue.7319
, pp. 1061-1073
-
-
Abecasis, G.R.1
Altshuler, D.2
Auton, A.3
Brooks, L.D.4
Durbin, R.M.5
-
30
-
-
79957951017
-
Low-coverage sequencing: Implications for design of complex trait association studies
-
PMID: 21460063; PubMed Central PMCID: PMC3106327
-
Li Y, Sidore C, Kang HM, Boehnke M, Abecasis GR. Low-coverage sequencing: implications for design of complex trait association studies. Genome research. 2011; 21(6):940-51. doi: 10.1101/gr.117259.110 PMID: 21460063; PubMed Central PMCID: PMC3106327.
-
(2011)
Genome Research
, vol.21
, Issue.6
, pp. 940-951
-
-
Li, Y.1
Sidore, C.2
Kang, H.M.3
Boehnke, M.4
Abecasis, G.R.5
|