A mini-review on functional nucleic acids-based heavy metal ion detection

Biosensors and Bioelectronics

Volumn 86, Issue , 2016, Pages 353-368

  Zhan, Shenshan ^a,b,c   Wu, Yuangen ^d   Wang, Lumei ^a,b,c   Zhan, Xuejia ^a,b,c   Zhou, Pei ^a,b,c  

^a SHANGHAI JIAO TONG UNIVERSITY   (China)

^b School of Agriculture and Biology   (China)

^c AGRO ENVIRONMENTAL PROTECTION INSTITUTE   (China)

^d GUIZHOU UNIVERSITY   (China)

Author keywords

Aptamer; DNAzyme; Functional nucleic acids; G quadruplex; Heavy metal ion detection; Microfluidic sensor

Indexed keywords

ANALYTIC EQUIPMENT; BIOMOLECULES; LAB-ON-A-CHIP; METAL IONS; METALS; MICROFLUIDICS; NUCLEIC ACIDS;

APTAMERS; DNAZYME; FUNCTIONAL NUCLEIC ACIDS; G-QUADRUPLEXES; MICRO-FLUIDIC SENSORS;

HEAVY METALS;

APTAMER; DEOXYRIBOZYME; FUNCTIONAL NUCLEIC ACID; GUANINE RICH OLIGONUCLEOTIDE; HEAVY METAL; METAL ION; METAL ION SPECIFIC DNA; NUCLEIC ACID; UNCLASSIFIED DRUG; ION; POLLUTANT;

ANALYTICAL EQUIPMENT; BIOSENSOR; DISC BASED ANALYTICAL PLATFORM; INTERMETHOD COMPARISON; LATERAL FLOW DIPSTICK; MICROCHIP; MICROFLUIDIC LAB ON A CHIP SYSTEM; MICROFLUIDIC PAPER BASED ANALYTICAL DEVICE; PERSONAL GLUCOSE METER; REVIEW; ANALYSIS; CHEMISTRY; DEVICE FAILURE ANALYSIS; DEVICES; ENVIRONMENTAL MONITORING; EQUIPMENT DESIGN; GENETIC PROCEDURES; GENETICS; LAB ON A CHIP; POLLUTANT; REPRODUCIBILITY; SENSITIVITY AND SPECIFICITY;

BIOSENSING TECHNIQUES; ENVIRONMENTAL MONITORING; ENVIRONMENTAL POLLUTANTS; EQUIPMENT DESIGN; EQUIPMENT FAILURE ANALYSIS; IONS; LAB-ON-A-CHIP DEVICES; METALS, HEAVY; MOLECULAR PROBE TECHNIQUES; NUCLEIC ACIDS; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY;

EID: 84978977092     PISSN: 09565663     EISSN: 18734235     Source Type: Journal    
DOI: 10.1016/j.bios.2016.06.075     Document Type: Review

References (126)

1. Adrian, M., Heddi, B., Phan, A.T., Methods 57 (2012), 11–24.
2. Amaya-González, S., de-los-Santos-Álvarez, N., Miranda-Ordieres, A.J., Lobo-Castañón, M.J., Sensors 13 (2013), 16292–16311.
3. Arnandis-Chover, T., Morais, S., Tortajada-Genaro, L.A., Puchades, R., Maquieira, Á., Berganza, J., Olabarria, G., Talanta 101 (2012), 405–412.
4. Breaker, R.R., Joyce, G.F., Chem. Biol. 1 (1994), 223–229.
5. Cai, S., Tian, X., Sun, L., Hu, H., Zheng, S., Jiang, H., Yu, L., Zeng, S., Anal. Chem. 87 (2015), 10542–10546.
6. Chang, I.-H., Tulock, J.J., Liu, J., Kim, W.-S., Cannon, D.M., Lu, Y., Bohn, P.W., Sweedler, J.V., Cropek, D.M., Environ. Sci. Technol. 39 (2005), 3756–3761.
7. Chen, A., Yang, S., Biosens. Bioelectron. 71 (2015), 230–242.
8. Chen, G.-H., Chen, W.-Y., Yen, Y.-C., Wang, C.-W., Chang, H.-T., Chen, C.-F., Anal. Chem. 86 (2014), 6843–6849.
9. Chen, J., Zhou, S., Wen, J., Anal. Chem. 86 (2014), 3108–3114.
10. Chen, J., Zhou, X., Zeng, L., Chem. Commun. 49 (2013), 984–986.
11. Chen, Z., Chen, L., Ma, H., Zhou, T., Li, X., Biosens. Bioelectron. 48 (2013), 108–112.
12. Cheng, C.M., Martinez, A.W., Gong, J., Mace, C.R., Phillips, S.T., Carrilho, E., Mirica, K.A., Whitesides, G.M., Angew. Chem. Int. Ed. 49 (2010), 4771–4774.
13. Cho, Y.S., Lee, E.J., Lee, G.-H., Hah, S.S., Bioorg. Med. Chem. Lett. 25 (2015), 5536–5539.
14. Dalavoy, T.S., Wernette, D.P., Gong, M., Sweedler, J.V., Lu, Y., Flachsbart, B.R., Shannon, M.A., Bohn, P.W., Cropek, D.M., Lab. Chip 8 (2008), 786–793.
15. Delmulle, B.S., De Saeger, S.M., Sibanda, L., Barna-Vetro, I., Van Peteghem, C.H., J. Agric. Food Chem. 53 (2005), 3364–3368.
16. Du, J., Liu, M., Lou, X., Zhao, T., Wang, Z., Xue, Y., Zhao, J., Xu, Y., Anal. Chem. 84 (2012), 8060–8066.
17. Duan, J., Guo, Z.Y., Chin. Chem. Lett. 23 (2012), 225–228.
18. Duruibe, J., Ogwuegbu, M., Egwurugwu, J., Int. J. Phys. Sci. 2 (2007), 112–118.
19. Ellington, A.D., Szostak, J.W., 1990. Nature 346, 818–822.
20. Famulok, M., Hartig, J.S., Mayer, G., Chem. Rev. 107 (2007), 3715–3743.
21. Fang, Z., Huang, J., Lie, P., Xiao, Z., Ouyang, C., Wu, Q., Wu, Y., Liu, G., Zeng, L., Chem. Commun. 46 (2010), 9043–9045.
22. Faulhammer, D., Famulok, M., Angew. Chem. Int. Ed. 35 (1996), 2837–2841.
23. Fu, L., Zhuang, J., Lai, W., Que, X., Lu, M., Tang, D., J. Mater. Chem. B 1 (2013), 6123–6128.
24. Gao, X., Xu, L.-P., Zhou, S.-F., Liu, G., Zhang, X., Am. J. Biomed. Sci. 6 (2014), 41–57.
25. Ge, C., Luo, Q., Wang, D., Zhao, S., Liang, X., Yu, L., Xing, X., Zeng, L., Anal. Chem. 86 (2014), 6387–6392.
26. Gellert, M., Lipsett, M.N., Davies, D.R., Proc. Natl. Acad. Sci. USA 48 (1962), 2013–2018.
27. Gerhold, D., Rushmore, T., Caskey, C.T., Trends Biochem. Sci. 24:5 (1999), 168–173.
28. Guo, Z., Duan, J., Yang, F., Li, M., Hao, T., Wang, S., Wei, D., Talanta 93 (2012), 49–54.
29. Hayat, A., Marty, J.L., Front. Chem. 2 (2014), 1–9.
30. He, Y., Zhang, X., Zeng, K., Zhang, S., Baloda, M., Gurung, A.S., Liu, G., Biosens. Bioelectron. 26 (2011), 4464–4470.
31. Hermann, T., Patel, D.J., Science 287 (2000), 820–825.
32. Huppert, J.L., Chem. Soc. Rev. 37 (2008), 1375–1384.
33. Iliuk, A.B., Hu, L., Tao, W.A., Anal. Chem. 83 (2011), 4440–4452.
34. Imaad, S.M., Lord, N., Kulsharova, G., Liu, G.L., Lab. Chip 11:8 (2011), 1448–1456.
35. Ivanov, Y.D., Pleshakova, T.O., Krohin, N.V., Kaysheva, A.L., Usanov, S.A., Archakov, A.I., Biosens. Bioelectron. 43 (2013), 384–390.
36. Kang, H., Lin, L., Rong, M., Chen, X., Talanta 129 (2014), 296–302.
37. Kim, M., Um, H.J., Bang, S., Lee, S.H., Oh, S.J., Han, J.H., Kim, K.W., Min, J., Kim, Y.H., Environ. Sci. Technol. 43 (2009), 9335–9340.
38. Kim, Y.S., Gu, M.B., Biosensors Based on Aptamers and Enzymes. 2014, Springer, Berlin, 29–67.
39. Lan, T., Lu, Y., Interplay between Metal Ions and Nucleic Acids. 2012, Springer, Berlin, 217–248.
40. Lee, J.-S., Han, M.S., Mirkin, C.A., Angew. Chem. Int. Ed. 119 (2007), 4171–4174.
41. Lee, J.-S., Mirkin, C.A., Anal. Chem. 80 (2008), 6805–6808.
42. Leuvering, J.H., Thal, P., Waart, Mvd, Schuurs, A., J. Immunoass. 1 (1980), 77–91.
43. Li, J., Lu, Y., J. Am. Chem. Soc. 122 (2000), 10466–10467.
44. Li, J., Zheng, W., Kwon, A.H., Lu, Y., Nucleic Acids Res. 28 (2000), 481–488.
45. Li, X., Weng, S., Ge, B., Yao, Z., Yu, H.-Z., Lab. Chip 14 (2014), 1686–1694.
46. Li, Y., Lu, Y., Functional Nucleic Acids for Analytical Applications. 2009, Springer, Berlin.
47. Liana, D.D., Raguse, B., Gooding, J.J., Chow, E., Sensors 12 (2012), 11505–11526.
48. Liang, R.P., Wang, Z.X., Zhang, L., Qiu, J.D., Chem. Eur. J. 19 (2013), 5029–5033.
49. Lisowski, P., Zarzycki, P.K., Chromatographia 76 (2013), 1201–1214.
50. Liu, G., Mao, X., Phillips, J.A., Xu, H., Tan, W., Zeng, L., Anal. Chem. 81 (2009), 10013–10018.
51. Liu, G., Zhang, Q., Qian, Y., Yu, S., Li, F., Anal. Methods 5 (2013), 648–652.
52. Liu, J., Cao, Z., Lu, Y., Chem. Rev. 109 (2009), 1948–1998.
53. Liu, J., Lu, Y., J. Am. Chem. Soc. 125 (2003), 6642–6643.
54. Liu, J., Mazumdar, D., Lu, Y., Angew. Chem. Int. Ed. 118 (2006), 8123–8127.
55. Liu, M.Y., Lou, X.H., Du, J., Guan, M., Wang, J., Ding, X.F., Zhao, J.L., Analyst 137 (2012), 70–72.
56. Liu, S., Na, W., Pang, S., Su, X., Biosens. Bioelectron. 58 (2014), 17–21.
57. Macaya, R.F., Schultze, P., Smith, F.W., Roe, J.A., Feigon, J., Proc. Natl. Acad. Sci. USA 90 (1993), 3745–3749.
58. Mascini, M., Palchetti, I., Tombelli, S., Angew. Chem. Int. Ed. 51 (2012), 1316–1332.
59. Mazumdar, D., Liu, J., Lu, G., Zhou, J., Lu, Y., Chem. Commun. 46 (2010), 1416–1418.
60. Meredith, N.A., Quinn, C., Cate, D.M., Reilly, T.H., Volckens, J., Henry, C.S., Analyst 141 (2016), 1874–1887.
61. Miyake, Y., Togashi, H., Tashiro, M., Yamaguchi, H., Oda, S., Kudo, M., Tanaka, Y., Kondo, Y., Sawa, R., Fujimoto, T., J. Am. Chem. Soc. 128 (2006), 2172–2173.
62. Morais, S., Puchades, R., Maquieira, Á., Anal. Bioanal. Chem., 2016, 1–12.
63. Ono, A., Cao, S., Togashi, H., Tashiro, M., Fujimoto, T., Machinami, T., Oda, S., Miyake, Y., Okamoto, I., Tanaka, Y., Chem. Commun. 44 (2008), 4825–4827.
64. Ou, T.-M., Lu, Y.-J., Tan, J.-H., Huang, Z.-S., Wong, K.-Y., Gu, L.-Q., ChemMedChem 3 (2008), 690–713.
65. Palchetti, I., Mascini, M., Analyst 133 (2008), 846–854.
66. Park, K.S., Park, H.G., Curr. Opin. Biotechnol. 28 (2014), 17–24.
67. Park, M., Ha, H.D., Kim, Y.T., Jung, J.H., Kim, S.-H., Kim, D.H., Seo, T.S., Anal. Chem. 87 (2015), 10969–10975.
68. Parolo, C., Merkoçi, A., Chem. Soc. Rev. 42 (2013), 450–457.
69. Peracchi, A., Bonaccio, M., Clerici, M., J. Mol. Biol. 352 (2005), 783–794.
70. Rajendran, M., Ellington, A.D., Anal. Bioanal. Chem. 390 (2008), 1067–1075.
71. Ramachandraiah, H., Amasia, M., Cole, J., Sheard, P., Pickhaver, S., Walker, C., Wirta, V., Lexow, P., Lione, R., Russom, A., Lab. Chip 13 (2013), 1578–1585.
72. Ren, W., Zhang, Y., Chen, H.G., Gao, Z.F., Li, N.B., Luo, H.Q., Anal. Chem. 88 (2016), 1385–1390.
73. Sajid, M., Kawde, A.-N., Daud, M., J. Saudi Chem. Soc. 19 (2015), 689–705.
74. Santoro, S.W., Joyce, G.F., Proc. Natl. Acad. Sci. USA 94 (1997), 4262–4266.
75. Sett, A., Das, S., Bora, U., Appl. Biochem. Biotech. 174 (2014), 1073–1091.
76. Shah, P., Zhu, X., Li, C.-Z., Expert Rev. Mol. Diagn. 13 (2013), 83–91.
77. Shaikh, K.A., Ryu, K.S., Goluch, E.D., Nam, J.-M., Liu, J., Thaxton, C.S., Chiesl, T.N., Barron, A.E., Lu, Y., Mirkin, C.A., Proc. Natl. Acad. Sci. USA 102 (2005), 9745–9750.
78. Song, K.-M., Lee, S., Ban, C., Sensors 12 (2012), 612–631.
79. Song, K., Kong, X., Liu, X., Zhang, Y., Zeng, Q., Tu, L., Shi, Z., Zhang, H., Chem. Commun. 48 (2012), 1156–1158.
80. Swearingen, C.B., Wernette, D.P., Cropek, D.M., Lu, Y., Sweedler, J.V., Bohn, P.W., Anal. Chem. 77 (2005), 442–448.
81. Torabi, S.-F., Lu, Y., Faraday Discuss. 149 (2011), 125–135.
82. Torigoe, H., Miyakawa, Y., Ono, A., Kozasa, T., Nucleosides Nucleotides Nucleic Acids 30 (2011), 149–167.
83. Torigoe, H., Ono, A., Kozasa, T., Chem. Eur. J. 16 (2010), 13218–13225.
84. Tortajada-Genaro, L.A., Santiago-Felipe, S., Morais, S., Gabaldón, J.A., Puchades, R., Maquieira, Á., J. Agric. Food Chem. 60 (2012), 36–43.
85. Tsekenis, G., Filippidou, M., Chatzipetrou, M., Tsouti, V., Zergioti, I., Chatzandroulis, S., Sens. Actuators B: Chem. 208 (2015), 628–635.
86. Tuerk, C., Gold, L., Science 249 (1990), 505–510.
87. Uglov, A.N., Bessmertnykh-Lemeune, A., Guilard, R., Averin, A.D., Beletskaya, I.P., Russ. Chem. Rev. 83 (2014), 196–224.
88. Van Dorst, B., Mehta, J., Bekaert, K., Rouah-Martin, E., De Coen, W., Dubruel, P., Blust, R., Robbens, J., Biosens. Bioelectron. 26 (2010), 1178–1194.
89. Wanekaya, A.K., Analyst 136 (2011), 4383–4391.
90. Wang, G., Chen, L., Zhu, Y., He, X., Xu, G., Zhang, X., Biosens. Bioelectron. 61 (2014), 410–416.
91. Wang, H., Cheng, H., Wang, J., Xu, L., Chen, H., Pei, R., Talanta 154 (2016), 498–503.
92. Wang, M., Leung, K.-H., Lin, S., Chan, D.S.-H., Leung, C.-H., Ma, D.-L., J. Mater. Chem. B 2 (2014), 6467–6471.
93. Wei, Y., Li, B., Wang, X., Duan, Y., Biosens. Bioelectron. 58 (2014), 276–281.
94. Willner, I., Li, D., Wieckowska, A., Angew. Chem. Int. Ed. 47 (2008), 3927–3931.
95. Wu, P., Zhao, T., Wang, S., Hou, X., Nanoscale 6 (2014), 43–64.
96. Wu, Y., Zhan, S., Wang, L., Zhou, P., Analyst 139 (2014), 1550–1561.
97. Wu, Y., Zhan, S., Xing, H., He, L., Xu, L., Zhou, P., Nanoscale 4 (2012), 6841–6849.
98. Wu, Y., Zhan, S., Xu, L., Shi, W., Xi, T., Zhan, X., Zhou, P., Chem. Commun. 47 (2011), 6027–6029.
99. Xiang, Y., Lu, Y., Nat. Chem. 3 (2011), 697–703.
100. Xiang, Y., Lu, Y., Anal. Chem. 84 (2012), 1975–1980.
101. Xiang, Y., Lu, Y., Inorg. Chem. 53 (2013), 1925–1942.
102. Xiang, Y., Lu, Y., Chem. Commun. 49 (2013), 585–587.
103. Yang, C., Liu, L., Zeng, T., Yang, D., Yao, Z., Zhao, Y., Wu, H.-C., Anal. Chem. 85 (2013), 7302–7307.
104. Yang, F., Duan, J., Li, M., Wang, Z., Guo, Z., Anal. Sci. 28 (2012), 333–338.
105. Yang, X., Wei, W., Jiang, J., Shen, G., Yu, R., Anal. Methods 8 (2016), 311–315.
106. Yuce, M., Ullah, N., Budak, H., Analyst 140 (2015), 5379–5399.
107. Zhan, S., Wu, Y., Liu, L., Xing, H., He, L., Zhan, X., Luo, Y., Zhou, P., RSC Adv. 3 (2013), 16962–16966.
108. Zhan, S., Wu, Y., Luo, Y., Liu, L., He, L., Xing, H., Zhou, P., Anal. Biochem. 462 (2014), 19–25.
109. Zhan, S., Xu, H., Zhan, X., Wu, Y., Wang, L., Lv, J., Zhou, P., Microchim. Acta 182 (2015), 1411–1419.
110. Zhan, S., Xu, H., Zhang, D., Xia, B., Zhan, X., Wang, L., Lv, J., Zhou, P., Biosens. Bioelectron. 72 (2015), 95–99.
111. Zhan, S., Xu, H., Zhang, W., Zhan, X., Wu, Y., Wang, L., Zhou, P., Talanta 142 (2015), 176–182.
112. Zhan, S.S., Wu, Y.G., He, L., Wang, F.Z., Zhan, X.J., Zhou, P., Qiu, S.Y., Anal. Methods 4 (2012), 3997–4002.
113. Zhang, C., Xing, D., Chem. Rev. 110 (2010), 4910–4947.
114. Zhang, C.Z., Wang, L., Tu, Z., Sun, X., He, Q.H., Lei, Z.J., Xu, C.X., Liu, Y., Zhang, X., Yang, J.Y., Liu, X.J., Xu, Y., Biosens. Bioelectron. 55 (2014), 216–219.
115. Zhang, J., Tang, Y., Teng, L., Lu, M., Tang, D., Biosens. Bioelectron. 68 (2015), 232–238.
116. Zhang, J., Tian, J., He, Y., Zhao, Y., Zhao, S., Chem. Commun. 50 (2014), 2049–2051.
117. Zhang, L., Li, X., Li, Y., Shi, X., Yu, H.-Z., Anal. Chem. 87 (2015), 1896–1902.
118. Zhang, L., Wong, J.X.H., Li, X., Li, Y., Yu, H.-Z., Anal. Chem. 87 (2015), 5062–5067.
119. Zhang, L., Zhu, J., Ai, J., Zhou, Z., Jia, X., Wang, E., Biosens. Bioelectron. 39 (2013), 268–273.
120. Zhang, M., Ge, L., Ge, S., Yan, M., Yu, J., Huang, J., Liu, S., Biosens. Bioelectron. 41 (2013), 544–550.
121. Zhang, X.-B., Kong, R.-M., Lu, Y., Annu. Rev. Anal. Chem. 4 (2011), 105–128.
122. Zhou, X.-H., Kong, D.-M., Shen, H.-X., Anal. Chem. 82 (2009), 789–793.
123. Zhou, Y., Tang, L., Zeng, G., Zhang, C., Zhang, Y., Xie, X., Sens. Actuators B: Chem. 223 (2016), 280–294.
124. Zhu, G., Zhang, C.-Y., Analyst 139 (2014), 6326–6342.
125. Zhu, H., Snyder, M., Curr. Opin. Chem. Biol. 7 (2003), 55–63.
126. Zuo, P., Yin, B.-C., Ye, B.-C., Biosens. Bioelectron. 25 (2009), 935–939.