Label-free fluorescent sensor for lead ion detection based on lead(II)-stabilized G-quadruplex formation

Analytical Biochemistry

Volumn 462, Issue , 2014, Pages 19-25

  Zhan, Shenshan ^a   Wu, Yuangen ^a   Luo, Yanfang ^a   Liu, Le ^a   He, Lan ^a   Xing, Haibo ^a   Zhou, Pei ^a  

^a SHANGHAI JIAO TONG UNIVERSITY   (China)

Author keywords

Fluorescent sensor; G quadruplex; Lead ion detection

Indexed keywords

CHEMICAL DETECTION; FLUORESCENCE; IONS; OLIGONUCLEOTIDES;

DETECTION OF LEAD IONS; ENVIRONMENTAL SAMPLE; FLUORESCENCE INTENSITIES; FLUORESCENT SENSORS; G-QUADRUPLEX STRUCTURE; G-QUADRUPLEXES; LEAD IONS; LIMIT OF DETECTION;

LEAD COMPOUNDS;

GUANINE QUADRUPLEX; INTERCALATING AGENT; LEAD; DNA; FLUORESCENT DYE; ORGANIC COMPOUND; POLLUTANT; SYBR GREEN I;

ARTICLE; BIOSENSOR; CORRELATION COEFFICIENT; DNA STRUCTURE; FLUORESCENCE; HYDROGEN BOND; LIMIT OF DETECTION; MOLECULAR PROBE; PRIORITY JOURNAL; QUANTUM YIELD; ANALYSIS; CHEMISTRY; DRUG EFFECTS; GENETIC PROCEDURES; GENETICS; KINETICS; NUCLEOTIDE SEQUENCE; PHARMACOLOGY; POLLUTANT; PROCEDURES;

BASE SEQUENCE; BIOSENSING TECHNIQUES; DNA; ENVIRONMENTAL POLLUTANTS; FLUORESCENT DYES; G-QUADRUPLEXES; KINETICS; LEAD; ORGANIC CHEMICALS;

EID: 84904874233     PISSN: 00032697     EISSN: 10960309     Source Type: Journal    
DOI: 10.1016/j.ab.2014.01.010     Document Type: Article

References (54)

1. F. Li, L. Yang, M. Chen, P. Li, and B. Tang A selective amperometric sensing platform for lead based on target-induced strand release Analyst 138 2012 461 466
2. J. Chen, J. Liu, Z. Fang, and L. Zeng Random dsDNA-templated formation of copper nanoparticles as novel fluorescence probes for label-free lead ions detection Chem. Commun. 48 2012 1057 1059
3. M. Liu, X. Lou, J. Du, M. Guan, J. Wang, X. Ding, and J. Zhao DNAzyme-based fluorescent microarray for highly selective and sensitive detection of lead(II) Analyst 137 2012 70 72
4. 2+ ions Chem. Commun. 46 2010 3107 3109
5. 2+ at attomole levels by using dynamic light scattering and unmodified gold nanoparticles Anal. Biochem. 421 2012 582 586
6. C.B. Swearingen, D.P. Wernette, D.M. Cropek, Y. Lu, J.V. Sweedler, and P.W. Bohn Immobilization of a catalytic DNA molecular beacon on Au for Pb(II) detection Anal. Biochem. 77 2005 442 448 (Pubitemid 40116822)
7. K. Deibler, and P. Basu Continuing issues with lead: recent advances in detection Eur. J. Inorg. Chem. 2013 2013 1086 1096
8. L. Beqa, A.K. Singh, S.A. Khan, D. Senapati, S.R. Arumugam, and P.C. Ray Gold nanoparticle-based simple colorimetric and ultrasensitive dynamic light scattering assay for the selective detection of Pb(II) from paints, plastics, and water samples ACS Appl. Mater. Interfaces 3 2011 668 673
9. P. Sobrova, L. Trnkova, and R. Kizek Biosensors for Detection of Heavy Metals: Biosensors and Environmental Health 2012 Taylor & Francis Boca Raton, FL pp. 94-106
10. S.S. Zhan, Y.G. Wu, L. He, F.Z. Wang, X.J. Zhan, P. Zhou, and S.Y. Qiu A silver-specific DNA-based bio-assay for Ag(I) detection via the aggregation of unmodified gold nanoparticles in aqueous solution coupled with resonance Rayleigh scattering Anal. Methods 4 2012 3997 4002
11. P. Zhou, Y.G. Wu, S.S. Zhan, L.R. Xu, W.W. Shi, T. Xi, and X.J. Zhan A simple and label-free sensor for mercury(II) detection in aqueous solution by malachite green based on a resonance scattering spectral assay Chem. Commun. 47 2011 6027 6029
12. B.C. Ye, and B.C. Yin Highly sensitive detection of mercury(II) ions by fluorescence polarization enhanced by gold nanoparticles Angew. Chem. Int. Ed. 47 2008 8386 8389
13. J. Li, and Y. Lu A highly sensitive and selective catalytic DNA biosensor for lead ions J. Am. Chem. Soc. 122 2000 10466 10467
14. L.S. Ling, X.M. Miao, and X.T. Shuai Ultrasensitive detection of lead(II) with DNAzyme and gold nanoparticles probes by using a dynamic light scattering technique Chem. Commun. 47 2011 4192 4194
15. 2+) using unmodified gold nanoparticle probes Nanotechnology 19 2008 095501
16. Y. Xiao, A.A. Rowe, and K.W. Plaxco Electrochemical detection of parts-per-billion lead via an electrode-bound DNAzyme assembly J. Am. Chem. Soc. 129 2007 262 263 (Pubitemid 46106612)
17. X. Zhu, Z. Lin, L. Chen, B. Qiu, and G. Chen A sensitive and specific electrochemiluminescent sensor for lead based on DNAzyme Chem. Commun. 40 2009 6050 6052
18. L.Q. Guo, D.D. Nie, C.Y. Qiu, Q.S. Zheng, H.Y. Wu, P.R. Ye, Y.L. Hao, F.F. Fu, and G.N. Chen A G-quadruplex based label-free fluorescent biosensor for lead ion Biosens. Bioelectron. 35 2012 123 127
19. R. Buscaglia, D.M. Jameson, and J.B. Chaires G-quadruplex structure and stability illuminated by 2-aminopurine phasor plots Nucleic Acids Res. 40 2012 4203 4215
20. 2+ detection Anal. Chem. 82 2010 1515 1520
21. T. Li, S. Dong, and E. Wang A lead(II)-driven DNA molecular device for turn-on fluorescence detection of lead(II) ion with high selectivity and sensitivity J. Am. Chem. Soc. 132 2010 13156 13157
22. 2+ Analyst 136 2011 2367 2372
23. 2+ and adenosine with high sensitivity, selectivity, and tunable dynamic range J. Am. Chem. Soc. 131 2009 15352 15357
24. C.W. Liu, C.C. Huang, and H.T. Chang Highly selective DNA-based sensor for lead(II) and mercury(II) ions Anal. Chem. 81 2009 2383 2387
25. M. Li, X. Zhou, S. Guo, and N. Wu Detection of lead(II) with a "turn-on" fluorescent biosensor based on energy transfer from CdSe/ZnS quantum dots to graphene oxide Biosens. Bioelectron. 43 2012 69 74
26. P. Zhou, S. Zhan, Y. Wu, L. Liu, H. Xing, L. He, X. Zhan, and Y. Luo A simple fluorescent assay for lead(II) detection based on lead (II)-stabilized G-quadruplex formation RSC Adv. 3 2013 16962 16966
27. Y. Xiang, Z. Wang, H. Xing, N.Y. Wong, and Y. Lu Label-free fluorescent functional DNA sensors using unmodified DNA: a vacant site approach Anal. Chem. 82 2010 4122 4129
28. X. Ren, and Q.H. Xu Label-free DNA sequence detection with enhanced sensitivity and selectivity using cationic conjugated polymers and PicoGreen Langmuir 25 2008 43 47
29. F. Vitzthum, G. Geiger, H. Bisswanger, H. Brunner, and J. Bernhagen A quantitative fluorescence-based microplate assay for the determination of double-stranded DNA using SYBR Green I and a standard ultraviolet transilluminator gel imaging system Anal. Biochem. 276 1999 59 64
30. S. Mondal, and V. Venkataraman Novel fluorescence detection technique for non-contact temperature sensing in microchip PCR J. Biochem. Biophys. Methods 70 2007 773 777 (Pubitemid 47021219)
31. H. Zipper, H. Brunner, J. Bernhagen, and F. Vitzthum Investigations on DNA intercalation and surface binding by SYBR Green I, its structure determination, and methodological implications Nucleic Acids Res. 32 2004 e103
32. 2+ in aqueous solution with mercury-specific DNA and SYBR Green I Chem. Commun. 44 2008 4759 4761
33. Q. Yang, F. Li, Y. Huang, H. Xu, L. Tang, L. Wang, and C. Fan Highly sensitive and selective detection of silver(I) in aqueous solution with silver(I)-specific DNA and SYBR Green I Analyst 138 2013 2057 2060
34. 2+ DNA sensor based on a duplex-quadruplex exchange Anal. Methods 5 2013 6100 6105
35. Z.E. Jacobi, L. Li, and J. Liu Visual detection of lead(II) using a label-free DNA-based sensor and its immobilization within a monolithic hydrogel Analyst 137 2012 704 709
36. J. Liu, N. Dave, and P.-J. J. Huang Ultrasensitive visual fluorescence detection of heavy metal ions in water based on DNA-functionalized hydrogels S.M. Tiquia-Arashiro, Molecular Biological Technologies for Ocean Sensing 2012 Springer New York 117 134
37. Y. Qin, and L.H. Hurley Structures, folding patterns, and functions of intramolecular DNA G-quadruplexes found in eukaryotic promoter regions Biochimie 90 2008 1149 1171
38. K. Rurack Flipping the light switch on: the design of sensor molecules that show cation-induced fluorescence enhancement with heavy and transition metal ions Spectrochim. Acta A 57 2001 2161 2195 (Pubitemid 32876886)
39. R. Jin, B.L. Gaffney, C. Wang, R.A. Jones, and K.J. Breslauer Thermodynamics and structure of a DNA tetraplex: a spectroscopic and calorimetric study of the tetramolecular complexes of d(TG3T) and d(TG3T2G3T) Proc. Natl. Acad. Sci. U.S.A. 89 1992 8832 8836
40. E.Y.N. Lam, D. Beraldi, D. Tannahill, and S. Balasubramanian G-quadruplex structures are stable and detectable in human genomic DNA Nat. Commun. 4 2013 1796 1803
41. I.H. Chang, J.J. Tulock, J. Liu, W.S. Kim, D.M. Cannon, Y. Lu, P.W. Bohn, J.V. Sweedler, and D.M. Cropek Miniaturized lead sensor based on lead-specific DNAzyme in a nanocapillary interconnected microfluidic device Environ. Sci. Technol. 39 2005 3756 3761 (Pubitemid 40705501)
42. Y. Lu, Z.D. Wang, and J.H. Lee Label-free colorimetric detection of lead ions with a nanomolar detection limit and tunable dynamic range by using gold nanoparticles and DNAzyme Adv. Mater. 20 2008 3263 3267
43. T. Li, E. Wang, and S. Dong Potassium-lead-switched G-quadruplexes: a new class of DNA logic gates J. Am. Chem. Soc. 131 2009 15082 15083
44. Y. Zhao, Q. Zhang, W. Wang, and Y. Jin Input-dependent induction of G-quadruplex formation for detection of lead(II) by fluorescent ion logic gate Biosens. Bioelectron. 43 2012 231 236
45. W. Wang, Y. Jin, Y. Zhao, X. Yue, and C. Zhang Single-labeled hairpin probe for highly specific and sensitive detection of lead(II) based on the fluorescence quenching of deoxyguanosine and G-quartet Biosens. Bioelectron. 41 2012 137 142
46. 2+ based on graphene oxide and G-quadruplex DNA Phys. Chem. Chem. Phys. 15 2013 12800 12804
47. 2+ Analyst 136 2011 2367 2372
48. F. Li, Y. Feng, C. Zhao, and B. Tang Crystal violet as a G-quadruplex-selective probe for sensitive amperometric sensing of lead Chem. Commun. 47 2011 11909 11911
49. 2+-introduced activation of horseradish peroxidase (HRP)-mimicking DNAzyme Chem. Commun. 47 2011 7437 7439
50. 2+ RSC Adv. 3 2013 13144 13148
51. H.Z. He, K.H. Leung, H. Yang, D.S.H. Chan, C.H. Leung, J. Zhou, A. Bourdoncle, J.L. Mergny, and D.L. Ma Label-free detection of sub-nanomolar lead(II) ions in aqueous solution using a metal-based luminescent switch-on probe Biosens. Bioelectron. 41 2012 871 874
52. 2+ using aptamer-modified AuPd nanoalloy as probe Plasmonics 5 2010 375 381
53. X.B. Fu, F. Qu, N.B. Li, and H.Q. Luo A label-free thrombin binding aptamer as a probe for highly sensitive and selective detection of lead(II) ions by a resonance Rayleigh scattering method Analyst 137 2012 1097 1099
54. 2+-dependent DNAzyme and hemin/G-quadruplex as a label Anal. Chem. 84 2012 3703 3709