-
1
-
-
84926132930
-
The draft assembly of the radically organized Stylonychia lemnae macronuclear genome
-
Aeschlimann, S.H., Jönsson, F., Postberg, J., Stover, N.A., Petera, R.L., Lipps, H.J., Nowacki, M., Swart, E.C., The draft assembly of the radically organized Stylonychia lemnae macronuclear genome. Genome Biol. Evol. 6 (2014), 1707–1723.
-
(2014)
Genome Biol. Evol.
, vol.6
, pp. 1707-1723
-
-
Aeschlimann, S.H.1
Jönsson, F.2
Postberg, J.3
Stover, N.A.4
Petera, R.L.5
Lipps, H.J.6
Nowacki, M.7
Swart, E.C.8
-
2
-
-
8544253956
-
A faux 3′-UTR promotes aberrant termination and triggers nonsense-mediated mRNA decay
-
Amrani, N., Ganesan, R., Kervestin, S., Mangus, D.A., Ghosh, S., Jacobson, A., A faux 3′-UTR promotes aberrant termination and triggers nonsense-mediated mRNA decay. Nature 432 (2004), 112–118.
-
(2004)
Nature
, vol.432
, pp. 112-118
-
-
Amrani, N.1
Ganesan, R.2
Kervestin, S.3
Mangus, D.A.4
Ghosh, S.5
Jacobson, A.6
-
3
-
-
77950400977
-
Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics
-
Aoki, K., Yano, K., Suzuki, A., Kawamura, S., Sakurai, N., Suda, K., Kurabayashi, A., Suzuki, T., Tsugane, T., Watanabe, M., et al. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. BMC Genomics, 11, 2010, 210.
-
(2010)
BMC Genomics
, vol.11
, pp. 210
-
-
Aoki, K.1
Yano, K.2
Suzuki, A.3
Kawamura, S.4
Sakurai, N.5
Suda, K.6
Kurabayashi, A.7
Suzuki, T.8
Tsugane, T.9
Watanabe, M.10
-
4
-
-
34548305228
-
Translation: duality in the genetic code
-
Atkins, J.F., Baranov, P.V., Translation: duality in the genetic code. Nature 448 (2007), 1004–1005.
-
(2007)
Nature
, vol.448
, pp. 1004-1005
-
-
Atkins, J.F.1
Baranov, P.V.2
-
5
-
-
33750858684
-
Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia
-
Aury, J.M., Jaillon, O., Duret, L., Noel, B., Jubin, C., Porcel, B.M., Ségurens, B., Daubin, V., Anthouard, V., Aiach, N., et al. Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia. Nature 444 (2006), 171–178.
-
(2006)
Nature
, vol.444
, pp. 171-178
-
-
Aury, J.M.1
Jaillon, O.2
Duret, L.3
Noel, B.4
Jubin, C.5
Porcel, B.M.6
Ségurens, B.7
Daubin, V.8
Anthouard, V.9
Aiach, N.10
-
6
-
-
84921643969
-
Transcriptome maps of mRNP biogenesis factors define pre-mRNA recognition
-
Baejen, C., Torkler, P., Gressel, S., Essig, K., Söding, J., Cramer, P., Transcriptome maps of mRNP biogenesis factors define pre-mRNA recognition. Mol. Cell 55 (2014), 745–757.
-
(2014)
Mol. Cell
, vol.55
, pp. 745-757
-
-
Baejen, C.1
Torkler, P.2
Gressel, S.3
Essig, K.4
Söding, J.5
Cramer, P.6
-
7
-
-
84908337853
-
New insights into the incorporation of natural suppressor tRNAs at stop codons in Saccharomyces cerevisiae
-
Blanchet, S., Cornu, D., Argentini, M., Namy, O., New insights into the incorporation of natural suppressor tRNAs at stop codons in Saccharomyces cerevisiae. Nucleic Acids Res. 42 (2014), 10061–10072.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 10061-10072
-
-
Blanchet, S.1
Cornu, D.2
Argentini, M.3
Namy, O.4
-
8
-
-
0021966091
-
Does Paramecium primaurelia use a different genetic code in its macronucleus?
-
Caron, F., Meyer, E., Does Paramecium primaurelia use a different genetic code in its macronucleus?. Nature 314 (1985), 185–188.
-
(1985)
Nature
, vol.314
, pp. 185-188
-
-
Caron, F.1
Meyer, E.2
-
9
-
-
84907350409
-
The architecture of a scrambled genome reveals massive levels of genomic rearrangement during development
-
Chen, X., Bracht, J.R., Goldman, A.D., Dolzhenko, E., Clay, D.M., Swart, E.C., Perlman, D.H., Doak, T.G., Stuart, A., Amemiya, C.T., et al. The architecture of a scrambled genome reveals massive levels of genomic rearrangement during development. Cell 158 (2014), 1187–1198.
-
(2014)
Cell
, vol.158
, pp. 1187-1198
-
-
Chen, X.1
Bracht, J.R.2
Goldman, A.D.3
Dolzhenko, E.4
Clay, D.M.5
Swart, E.C.6
Perlman, D.H.7
Doak, T.G.8
Stuart, A.9
Amemiya, C.T.10
-
10
-
-
84942044151
-
The use of duplex-specific nuclease in ribosome profiling and a user-friendly software package for Ribo-seq data analysis
-
Chung, B.Y., Hardcastle, T.J., Jones, J.D., Irigoyen, N., Firth, A.E., Baulcombe, D.C., Brierley, I., The use of duplex-specific nuclease in ribosome profiling and a user-friendly software package for Ribo-seq data analysis. RNA 21 (2015), 1731–1745.
-
(2015)
RNA
, vol.21
, pp. 1731-1745
-
-
Chung, B.Y.1
Hardcastle, T.J.2
Jones, J.D.3
Irigoyen, N.4
Firth, A.E.5
Baulcombe, D.C.6
Brierley, I.7
-
11
-
-
0036237537
-
Poly(A)-binding protein acts in translation termination via eukaryotic release factor 3 interaction and does not influence [PSI(+)] propagation
-
Cosson, B., Couturier, A., Chabelskaya, S., Kiktev, D., Inge-Vechtomov, S., Philippe, M., Zhouravleva, G., Poly(A)-binding protein acts in translation termination via eukaryotic release factor 3 interaction and does not influence [PSI(+)] propagation. Mol. Cell. Biol. 22 (2002), 3301–3315.
-
(2002)
Mol. Cell. Biol.
, vol.22
, pp. 3301-3315
-
-
Cosson, B.1
Couturier, A.2
Chabelskaya, S.3
Kiktev, D.4
Inge-Vechtomov, S.5
Philippe, M.6
Zhouravleva, G.7
-
12
-
-
80054058521
-
Comparative genomics of the pathogenic ciliate Ichthyophthirius multifiliis, its free-living relatives and a host species provide insights into adoption of a parasitic lifestyle and prospects for disease control
-
Coyne, R.S., Hannick, L., Shanmugam, D., Hostetler, J.B., Brami, D., Joardar, V.S., Johnson, J., Radune, D., Singh, I., Badger, J.H., et al. Comparative genomics of the pathogenic ciliate Ichthyophthirius multifiliis, its free-living relatives and a host species provide insights into adoption of a parasitic lifestyle and prospects for disease control. Genome Biol., 12, 2011, R100.
-
(2011)
Genome Biol.
, vol.12
, pp. R100
-
-
Coyne, R.S.1
Hannick, L.2
Shanmugam, D.3
Hostetler, J.B.4
Brami, D.5
Joardar, V.S.6
Johnson, J.7
Radune, D.8
Singh, I.9
Badger, J.H.10
-
13
-
-
2142738304
-
WebLogo: a sequence logo generator
-
Crooks, G.E., Hon, G., Chandonia, J.M., Brenner, S.E., WebLogo: a sequence logo generator. Genome Res. 14 (2004), 1188–1190.
-
(2004)
Genome Res.
, vol.14
, pp. 1188-1190
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.M.3
Brenner, S.E.4
-
14
-
-
84889593808
-
Ribosome profiling reveals pervasive and regulated stop codon readthrough in Drosophila melanogaster
-
Dunn, J.G., Foo, C.K., Belletier, N.G., Gavis, E.R., Weissman, J.S., Ribosome profiling reveals pervasive and regulated stop codon readthrough in Drosophila melanogaster. eLife, 2, 2013, e01179.
-
(2013)
eLife
, vol.2
, pp. e01179
-
-
Dunn, J.G.1
Foo, C.K.2
Belletier, N.G.3
Gavis, E.R.4
Weissman, J.S.5
-
15
-
-
79960135846
-
FACIL: Fast and Accurate Genetic Code Inference and Logo
-
Dutilh, B.E., Jurgelenaite, R., Szklarczyk, R., van Hijum, S.A., Harhangi, H.R., Schmid, M., de Wild, B., Françoijs, K.J., Stunnenberg, H.G., Strous, M., et al. FACIL: Fast and Accurate Genetic Code Inference and Logo. Bioinformatics 27 (2011), 1929–1933.
-
(2011)
Bioinformatics
, vol.27
, pp. 1929-1933
-
-
Dutilh, B.E.1
Jurgelenaite, R.2
Szklarczyk, R.3
van Hijum, S.A.4
Harhangi, H.R.5
Schmid, M.6
de Wild, B.7
Françoijs, K.J.8
Stunnenberg, H.G.9
Strous, M.10
-
16
-
-
84863988409
-
Structured multiple endosymbiosis of bacteria and archaea in a ciliate from marine sulfidic sediments: a survival mechanism in low oxygen, sulfidic sediments?
-
Edgcomb, V.P., Leadbetter, E.R., Bourland, W., Beaudoin, D., Bernhard, J.M., Structured multiple endosymbiosis of bacteria and archaea in a ciliate from marine sulfidic sediments: a survival mechanism in low oxygen, sulfidic sediments?. Front Microbiol, 2, 2011, 55.
-
(2011)
Front Microbiol
, vol.2
, pp. 55
-
-
Edgcomb, V.P.1
Leadbetter, E.R.2
Bourland, W.3
Beaudoin, D.4
Bernhard, J.M.5
-
17
-
-
33748598232
-
Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote
-
Eisen, J.A., Coyne, R.S., Wu, M., Wu, D., Thiagarajan, M., Wortman, J.R., Badger, J.H., Ren, Q., Amedeo, P., Jones, K.M., et al. Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote. PLoS Biol., 4, 2006, e286.
-
(2006)
PLoS Biol.
, vol.4
, pp. e286
-
-
Eisen, J.A.1
Coyne, R.S.2
Wu, M.3
Wu, D.4
Thiagarajan, M.5
Wortman, J.R.6
Badger, J.H.7
Ren, Q.8
Amedeo, P.9
Jones, K.M.10
-
18
-
-
79551484186
-
A single amino acid change of translation termination factor eRF1 switches between bipotent and omnipotent stop-codon specificity
-
Eliseev, B., Kryuchkova, P., Alkalaeva, E., Frolova, L., A single amino acid change of translation termination factor eRF1 switches between bipotent and omnipotent stop-codon specificity. Nucleic Acids Res. 39 (2011), 599–608.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 599-608
-
-
Eliseev, B.1
Kryuchkova, P.2
Alkalaeva, E.3
Frolova, L.4
-
19
-
-
84930210577
-
Phylogenomic analyses reveal subclass Scuticociliatia as the sister group of subclass Hymenostomatia within class Oligohymenophorea
-
Feng, J.M., Jiang, C.Q., Warren, A., Tian, M., Cheng, J., Liu, G.L., Xiong, J., Miao, W., Phylogenomic analyses reveal subclass Scuticociliatia as the sister group of subclass Hymenostomatia within class Oligohymenophorea. Mol. Phylogenet. Evol. 90 (2015), 104–111.
-
(2015)
Mol. Phylogenet. Evol.
, vol.90
, pp. 104-111
-
-
Feng, J.M.1
Jiang, C.Q.2
Warren, A.3
Tian, M.4
Cheng, J.5
Liu, G.L.6
Xiong, J.7
Miao, W.8
-
20
-
-
84891782659
-
Pfam: the protein families database
-
Finn, R.D., Bateman, A., Clements, J., Coggill, P., Eberhardt, R.Y., Eddy, S.R., Heger, A., Hetherington, K., Holm, L., Mistry, J., et al. Pfam: the protein families database. Nucleic Acids Res. 42 (2014), D222–D230.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D222-D230
-
-
Finn, R.D.1
Bateman, A.2
Clements, J.3
Coggill, P.4
Eberhardt, R.Y.5
Eddy, S.R.6
Heger, A.7
Hetherington, K.8
Holm, L.9
Mistry, J.10
-
21
-
-
0031662136
-
The genetic code is one in a million
-
Freeland, S.J., Hurst, L.D., The genetic code is one in a million. J. Mol. Evol. 47 (1998), 238–248.
-
(1998)
J. Mol. Evol.
, vol.47
, pp. 238-248
-
-
Freeland, S.J.1
Hurst, L.D.2
-
22
-
-
0037155592
-
An mRNA surveillance mechanism that eliminates transcripts lacking termination codons
-
Frischmeyer, P.A., van Hoof, A., O'Donnell, K., Guerrerio, A.L., Parker, R., Dietz, H.C., An mRNA surveillance mechanism that eliminates transcripts lacking termination codons. Science 295 (2002), 2258–2261.
-
(2002)
Science
, vol.295
, pp. 2258-2261
-
-
Frischmeyer, P.A.1
van Hoof, A.2
O'Donnell, K.3
Guerrerio, A.L.4
Parker, R.5
Dietz, H.C.6
-
23
-
-
84901465384
-
Large-scale phylogenomic analysis reveals the phylogenetic position of the problematic taxon Protocruzia and unravels the deep phylogenetic affinities of the ciliate lineages
-
Gentekaki, E., Kolisko, M., Boscaro, V., Bright, K.J., Dini, F., Di Giuseppe, G., Gong, Y., Miceli, C., Modeo, L., Molestina, R.E., et al. Large-scale phylogenomic analysis reveals the phylogenetic position of the problematic taxon Protocruzia and unravels the deep phylogenetic affinities of the ciliate lineages. Mol. Phylogenet. Evol. 78 (2014), 36–42.
-
(2014)
Mol. Phylogenet. Evol.
, vol.78
, pp. 36-42
-
-
Gentekaki, E.1
Kolisko, M.2
Boscaro, V.3
Bright, K.J.4
Dini, F.5
Di Giuseppe, G.6
Gong, Y.7
Miceli, C.8
Modeo, L.9
Molestina, R.E.10
-
24
-
-
39149086991
-
A genetic code alteration generates a proteome of high diversity in the human pathogen Candida albicans
-
Gomes, A.C., Miranda, I., Silva, R.M., Moura, G.R., Thomas, B., Akoulitchev, A., Santos, M.A., A genetic code alteration generates a proteome of high diversity in the human pathogen Candida albicans. Genome Biol., 8, 2007, R206.
-
(2007)
Genome Biol.
, vol.8
, pp. R206
-
-
Gomes, A.C.1
Miranda, I.2
Silva, R.M.3
Moura, G.R.4
Thomas, B.5
Akoulitchev, A.6
Santos, M.A.7
-
25
-
-
79960264362
-
Full-length transcriptome assembly from RNA-Seq data without a reference genome
-
Grabherr, M.G., Haas, B.J., Yassour, M., Levin, J.Z., Thompson, D.A., Amit, I., Adiconis, X., Fan, L., Raychowdhury, R., Zeng, Q., et al. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat. Biotechnol. 29 (2011), 644–652.
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 644-652
-
-
Grabherr, M.G.1
Haas, B.J.2
Yassour, M.3
Levin, J.Z.4
Thompson, D.A.5
Amit, I.6
Adiconis, X.7
Fan, L.8
Raychowdhury, R.9
Zeng, Q.10
-
26
-
-
0000760492
-
Dramatic events in ciliate evolution: alteration of UAA and UAG termination codons to glutamine codons due to anticodon mutations in two Tetrahymena tRNAs
-
Hanyu, N., Kuchino, Y., Nishimura, S., Beier, H., Dramatic events in ciliate evolution: alteration of UAA and UAG termination codons to glutamine codons due to anticodon mutations in two Tetrahymena tRNAs. EMBO J. 5 (1986), 1307–1311.
-
(1986)
EMBO J.
, vol.5
, pp. 1307-1311
-
-
Hanyu, N.1
Kuchino, Y.2
Nishimura, S.3
Beier, H.4
-
27
-
-
0036566787
-
Predominance of six different hexanucleotide recoding signals 3′ of read-through stop codons
-
Harrell, L., Melcher, U., Atkins, J.F., Predominance of six different hexanucleotide recoding signals 3′ of read-through stop codons. Nucleic Acids Res. 30 (2002), 2011–2017.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 2011-2017
-
-
Harrell, L.1
Melcher, U.2
Atkins, J.F.3
-
28
-
-
0022431806
-
Nucleotide sequence of a macronuclear DNA molecule coding for alpha-tubulin from the ciliate Stylonychia lemnae. Special codon usage: TAA is not a translation termination codon
-
Helftenbein, E., Nucleotide sequence of a macronuclear DNA molecule coding for alpha-tubulin from the ciliate Stylonychia lemnae. Special codon usage: TAA is not a translation termination codon. Nucleic Acids Res. 13 (1985), 415–433.
-
(1985)
Nucleic Acids Res.
, vol.13
, pp. 415-433
-
-
Helftenbein, E.1
-
29
-
-
0015223081
-
Tryptophan transfer RNA as the UGA suppressor
-
Hirsh, D., Tryptophan transfer RNA as the UGA suppressor. J. Mol. Biol. 58 (1971), 439–458.
-
(1971)
J. Mol. Biol.
, vol.58
, pp. 439-458
-
-
Hirsh, D.1
-
30
-
-
0015223090
-
Translation of the UGA triplet in vitro by tryptophan transfer RNA's
-
Hirsh, D., Gold, L., Translation of the UGA triplet in vitro by tryptophan transfer RNA's. J. Mol. Biol. 58 (1971), 459–468.
-
(1971)
J. Mol. Biol.
, vol.58
, pp. 459-468
-
-
Hirsh, D.1
Gold, L.2
-
31
-
-
0021833489
-
An unusual genetic code in nuclear genes of Tetrahymena
-
Horowitz, S., Gorovsky, M.A., An unusual genetic code in nuclear genes of Tetrahymena. Proc. Natl. Acad. Sci. USA 82 (1985), 2452–2455.
-
(1985)
Proc. Natl. Acad. Sci. USA
, vol.82
, pp. 2452-2455
-
-
Horowitz, S.1
Gorovsky, M.A.2
-
32
-
-
78650972252
-
Formation, regulation and evolution of Caenorhabditis elegans 3’UTRs
-
Jan, C.H., Friedman, R.C., Ruby, J.G., Bartel, D.P., Formation, regulation and evolution of Caenorhabditis elegans 3’UTRs. Nature 469 (2011), 97–101.
-
(2011)
Nature
, vol.469
, pp. 97-101
-
-
Jan, C.H.1
Friedman, R.C.2
Ruby, J.G.3
Bartel, D.P.4
-
33
-
-
6344262263
-
Highly divergent SSU rRNA genes found in the marine ciliates Myrionecta rubra and Mesodinium pulex
-
Johnson, M.D., Tengs, T., Oldach, D.W., Delwiche, C.F., Stoecker, D.K., Highly divergent SSU rRNA genes found in the marine ciliates Myrionecta rubra and Mesodinium pulex. Protist 155 (2004), 347–359.
-
(2004)
Protist
, vol.155
, pp. 347-359
-
-
Johnson, M.D.1
Tengs, T.2
Oldach, D.W.3
Delwiche, C.F.4
Stoecker, D.K.5
-
34
-
-
80055001959
-
Evidence of abundant stop codon readthrough in Drosophila and other metazoa
-
Jungreis, I., Lin, M.F., Spokony, R., Chan, C.S., Negre, N., Victorsen, A., White, K.P., Kellis, M., Evidence of abundant stop codon readthrough in Drosophila and other metazoa. Genome Res. 21 (2011), 2096–2113.
-
(2011)
Genome Res.
, vol.21
, pp. 2096-2113
-
-
Jungreis, I.1
Lin, M.F.2
Spokony, R.3
Chan, C.S.4
Negre, N.5
Victorsen, A.6
White, K.P.7
Kellis, M.8
-
35
-
-
0029879951
-
A non-canonical genetic code in an early diverging eukaryotic lineage
-
Keeling, P.J., Doolittle, W.F., A non-canonical genetic code in an early diverging eukaryotic lineage. EMBO J. 15 (1996), 2285–2290.
-
(1996)
EMBO J.
, vol.15
, pp. 2285-2290
-
-
Keeling, P.J.1
Doolittle, W.F.2
-
36
-
-
84903286893
-
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing
-
Keeling, P.J., Burki, F., Wilcox, H.M., Allam, B., Allen, E.E., Amaral-Zettler, L.A., Armbrust, E.V., Archibald, J.M., Bharti, A.K., Bell, C.J., et al. The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing. PLoS Biol., 12, 2014, e1001889.
-
(2014)
PLoS Biol.
, vol.12
, pp. e1001889
-
-
Keeling, P.J.1
Burki, F.2
Wilcox, H.M.3
Allam, B.4
Allen, E.E.5
Amaral-Zettler, L.A.6
Armbrust, E.V.7
Archibald, J.M.8
Bharti, A.K.9
Bell, C.J.10
-
37
-
-
85009754220
-
Cytoplasmic poly(A) binding protein-1 binds to genomically encoded sequences within mammalian mRNAs
-
Kini, H.K., Silverman, I.M., Ji, X., Gregory, B.D., Liebhaber, S.A., Cytoplasmic poly(A) binding protein-1 binds to genomically encoded sequences within mammalian mRNAs. RNA 22 (2016), 61–74.
-
(2016)
RNA
, vol.22
, pp. 61-74
-
-
Kini, H.K.1
Silverman, I.M.2
Ji, X.3
Gregory, B.D.4
Liebhaber, S.A.5
-
38
-
-
0035234558
-
Rewiring the keyboard: evolvability of the genetic code
-
Knight, R.D., Freeland, S.J., Landweber, L.F., Rewiring the keyboard: evolvability of the genetic code. Nat. Rev. Genet. 2 (2001), 49–58.
-
(2001)
Nat. Rev. Genet.
, vol.2
, pp. 49-58
-
-
Knight, R.D.1
Freeland, S.J.2
Landweber, L.F.3
-
39
-
-
63449132404
-
Origin and evolution of the genetic code: the universal enigma
-
Koonin, E.V., Novozhilov, A.S., Origin and evolution of the genetic code: the universal enigma. IUBMB Life 61 (2009), 99–111.
-
(2009)
IUBMB Life
, vol.61
, pp. 99-111
-
-
Koonin, E.V.1
Novozhilov, A.S.2
-
40
-
-
3242866705
-
Tetrahymena thermophila glutamine tRNA and its gene that corresponds to UAA termination codon
-
Kuchino, Y., Hanyu, N., Tashiro, F., Nishimura, S., Tetrahymena thermophila glutamine tRNA and its gene that corresponds to UAA termination codon. Proc. Natl. Acad. Sci. USA 82 (1985), 4758–4762.
-
(1985)
Proc. Natl. Acad. Sci. USA
, vol.82
, pp. 4758-4762
-
-
Kuchino, Y.1
Hanyu, N.2
Tashiro, F.3
Nishimura, S.4
-
41
-
-
34547414394
-
Different modes of stop codon restriction by the Stylonychia and Paramecium eRF1 translation termination factors
-
Lekomtsev, S., Kolosov, P., Bidou, L., Frolova, L., Rousset, J.P., Kisselev, L., Different modes of stop codon restriction by the Stylonychia and Paramecium eRF1 translation termination factors. Proc. Natl. Acad. Sci. USA 104 (2007), 10824–10829.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 10824-10829
-
-
Lekomtsev, S.1
Kolosov, P.2
Bidou, L.3
Frolova, L.4
Rousset, J.P.5
Kisselev, L.6
-
42
-
-
84906055556
-
The exploding genetic code
-
Lemke, E.A., The exploding genetic code. ChemBioChem 15 (2014), 1691–1694.
-
(2014)
ChemBioChem
, vol.15
, pp. 1691-1694
-
-
Lemke, E.A.1
-
43
-
-
82055164092
-
ViennaRNA Package 2.0
-
Lorenz, R., Bernhart, S.H., Höner Zu Siederdissen, C., Tafer, H., Flamm, C., Stadler, P.F., Hofacker, I.L., ViennaRNA Package 2.0. Algorithms Mol. Biol., 6, 2011, 26.
-
(2011)
Algorithms Mol. Biol.
, vol.6
, pp. 26
-
-
Lorenz, R.1
Bernhart, S.H.2
Höner Zu Siederdissen, C.3
Tafer, H.4
Flamm, C.5
Stadler, P.F.6
Hofacker, I.L.7
-
44
-
-
0035936577
-
The molecular basis of nuclear genetic code change in ciliates
-
Lozupone, C.A., Knight, R.D., Landweber, L.F., The molecular basis of nuclear genetic code change in ciliates. Curr. Biol. 11 (2001), 65–74.
-
(2001)
Curr. Biol.
, vol.11
, pp. 65-74
-
-
Lozupone, C.A.1
Knight, R.D.2
Landweber, L.F.3
-
45
-
-
0029047851
-
Translational termination efficiency in mammals is influenced by the base following the stop codon
-
McCaughan, K.K., Brown, C.M., Dalphin, M.E., Berry, M.J., Tate, W.P., Translational termination efficiency in mammals is influenced by the base following the stop codon. Proc. Natl. Acad. Sci. USA 92 (1995), 5431–5435.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 5431-5435
-
-
McCaughan, K.K.1
Brown, C.M.2
Dalphin, M.E.3
Berry, M.J.4
Tate, W.P.5
-
46
-
-
84976870547
-
A novel nuclear genetic code alteration in yeasts and the evolution of codon reassignment in eukaryotes
-
Published online May 6, 2016
-
Mühlhausen, S., Findeisen, P., Plessmann, U., Urlaub, H., Kollmar, M., A novel nuclear genetic code alteration in yeasts and the evolution of codon reassignment in eukaryotes. Genome Res., 2016, 10.1101/gr.200931.115 Published online May 6, 2016.
-
(2016)
Genome Res.
-
-
Mühlhausen, S.1
Findeisen, P.2
Plessmann, U.3
Urlaub, H.4
Kollmar, M.5
-
47
-
-
0034685821
-
Eukaryotic selenocysteine incorporation follows a nonprocessive mechanism that competes with translational termination
-
Nasim, M.T., Jaenecke, S., Belduz, A., Kollmus, H., Flohé, L., McCarthy, J.E., Eukaryotic selenocysteine incorporation follows a nonprocessive mechanism that competes with translational termination. J. Biol. Chem. 275 (2000), 14846–14852.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 14846-14852
-
-
Nasim, M.T.1
Jaenecke, S.2
Belduz, A.3
Kollmus, H.4
Flohé, L.5
McCarthy, J.E.6
-
48
-
-
66149132301
-
A functional role for transposases in a large eukaryotic genome
-
Nowacki, M., Higgins, B.P., Maquilan, G.M., Swart, E.C., Doak, T.G., Landweber, L.F., A functional role for transposases in a large eukaryotic genome. Science 324 (2009), 935–938.
-
(2009)
Science
, vol.324
, pp. 935-938
-
-
Nowacki, M.1
Higgins, B.P.2
Maquilan, G.M.3
Swart, E.C.4
Doak, T.G.5
Landweber, L.F.6
-
49
-
-
0024583607
-
Codon reassignment (codon capture) in evolution
-
Osawa, S., Jukes, T.H., Codon reassignment (codon capture) in evolution. J. Mol. Evol. 28 (1989), 271–278.
-
(1989)
J. Mol. Evol.
, vol.28
, pp. 271-278
-
-
Osawa, S.1
Jukes, T.H.2
-
50
-
-
0021939727
-
Deviation from the universal code shown by the gene for surface protein 51A in Paramecium
-
Preer, J.R. Jr., Preer, L.B., Rudman, B.M., Barnett, A.J., Deviation from the universal code shown by the gene for surface protein 51A in Paramecium. Nature 314 (1985), 188–190.
-
(1985)
Nature
, vol.314
, pp. 188-190
-
-
Preer, J.R.1
Preer, L.B.2
Rudman, B.M.3
Barnett, A.J.4
-
51
-
-
84924309972
-
Nonsense suppression by near-cognate tRNAs employs alternative base pairing at codon positions 1 and 3
-
Roy, B., Leszyk, J.D., Mangus, D.A., Jacobson, A., Nonsense suppression by near-cognate tRNAs employs alternative base pairing at codon positions 1 and 3. Proc. Natl. Acad. Sci. USA 112 (2015), 3038–3043.
-
(2015)
Proc. Natl. Acad. Sci. USA
, vol.112
, pp. 3038-3043
-
-
Roy, B.1
Leszyk, J.D.2
Mangus, D.A.3
Jacobson, A.4
-
52
-
-
30644474712
-
Distinct paths to stop codon reassignment by the variant-code organisms Tetrahymena and Euplotes
-
Salas-Marco, J., Fan-Minogue, H., Kallmeyer, A.K., Klobutcher, L.A., Farabaugh, P.J., Bedwell, D.M., Distinct paths to stop codon reassignment by the variant-code organisms Tetrahymena and Euplotes. Mol. Cell. Biol. 26 (2006), 438–447.
-
(2006)
Mol. Cell. Biol.
, vol.26
, pp. 438-447
-
-
Salas-Marco, J.1
Fan-Minogue, H.2
Kallmeyer, A.K.3
Klobutcher, L.A.4
Farabaugh, P.J.5
Bedwell, D.M.6
-
53
-
-
0037418581
-
A new noncanonical nuclear genetic code: translation of UAA into glutamate
-
Sánchez-Silva, R., Villalobo, E., Morin, L., Torres, A., A new noncanonical nuclear genetic code: translation of UAA into glutamate. Curr. Biol. 13 (2003), 442–447.
-
(2003)
Curr. Biol.
, vol.13
, pp. 442-447
-
-
Sánchez-Silva, R.1
Villalobo, E.2
Morin, L.3
Torres, A.4
-
54
-
-
0029045375
-
The CUG codon is decoded in vivo as serine and not leucine in Candida albicans
-
Santos, M.A., Tuite, M.F., The CUG codon is decoded in vivo as serine and not leucine in Candida albicans. Nucleic Acids Res. 23 (1995), 1481–1486.
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 1481-1486
-
-
Santos, M.A.1
Tuite, M.F.2
-
55
-
-
0025923213
-
Sequences of two rbcS cDNA clones of Batophora oerstedii: structural and evolutionary considerations
-
Schneider, S.U., de Groot, E.J., Sequences of two rbcS cDNA clones of Batophora oerstedii: structural and evolutionary considerations. Curr. Genet. 20 (1991), 173–175.
-
(1991)
Curr. Genet.
, vol.20
, pp. 173-175
-
-
Schneider, S.U.1
de Groot, E.J.2
-
56
-
-
0024721315
-
Strong homology between the small subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase of two species of Acetabularia and the occurrence of unusual codon usage
-
Schneider, S.U., Leible, M.B., Yang, X.P., Strong homology between the small subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase of two species of Acetabularia and the occurrence of unusual codon usage. Mol. Gen. Genet. 218 (1989), 445–452.
-
(1989)
Mol. Gen. Genet.
, vol.218
, pp. 445-452
-
-
Schneider, S.U.1
Leible, M.B.2
Yang, X.P.3
-
57
-
-
0028332057
-
Transfer RNA mutation and the malleability of the genetic code
-
Schultz, D.W., Yarus, M., Transfer RNA mutation and the malleability of the genetic code. J. Mol. Biol. 235 (1994), 1377–1380.
-
(1994)
J. Mol. Biol.
, vol.235
, pp. 1377-1380
-
-
Schultz, D.W.1
Yarus, M.2
-
58
-
-
84931576998
-
Pathways of Genetic Code Evolution in Ancient and Modern Organisms
-
Sengupta, S., Higgs, P.G., Pathways of Genetic Code Evolution in Ancient and Modern Organisms. J. Mol. Evol. 80 (2015), 229–243.
-
(2015)
J. Mol. Evol.
, vol.80
, pp. 229-243
-
-
Sengupta, S.1
Higgs, P.G.2
-
59
-
-
1642480256
-
Human PABP binds AU-rich RNA via RNA-binding domains 3 and 4
-
Sladic, R.T., Lagnado, C.A., Bagley, C.J., Goodall, G.J., Human PABP binds AU-rich RNA via RNA-binding domains 3 and 4. Eur. J. Biochem. 271 (2004), 450–457.
-
(2004)
Eur. J. Biochem.
, vol.271
, pp. 450-457
-
-
Sladic, R.T.1
Lagnado, C.A.2
Bagley, C.J.3
Goodall, G.J.4
-
60
-
-
84873111080
-
The Oxytricha trifallax macronuclear genome: a complex eukaryotic genome with 16,000 tiny chromosomes
-
Swart, E.C., Bracht, J.R., Magrini, V., Minx, P., Chen, X., Zhou, Y., Khurana, J.S., Goldman, A.D., Nowacki, M., Schotanus, K., et al. The Oxytricha trifallax macronuclear genome: a complex eukaryotic genome with 16,000 tiny chromosomes. PLoS Biol., 11, 2013, e1001473.
-
(2013)
PLoS Biol.
, vol.11
, pp. e1001473
-
-
Swart, E.C.1
Bracht, J.R.2
Magrini, V.3
Minx, P.4
Chen, X.5
Zhou, Y.6
Khurana, J.S.7
Goldman, A.D.8
Nowacki, M.9
Schotanus, K.10
-
61
-
-
0029069222
-
Genetic code deviations in the ciliates: evidence for multiple and independent events
-
Tourancheau, A.B., Tsao, N., Klobutcher, L.A., Pearlman, R.E., Adoutte, A., Genetic code deviations in the ciliates: evidence for multiple and independent events. EMBO J. 14 (1995), 3262–3267.
-
(1995)
EMBO J.
, vol.14
, pp. 3262-3267
-
-
Tourancheau, A.B.1
Tsao, N.2
Klobutcher, L.A.3
Pearlman, R.E.4
Adoutte, A.5
-
62
-
-
0019962368
-
Endogenous read-through of a UGA termination codon in a Saccharomyces cerevisiae cell-free system: evidence for involvement of both a mitochondrial and a nuclear tRNA
-
Tuite, M.F., McLaughlin, C.S., Endogenous read-through of a UGA termination codon in a Saccharomyces cerevisiae cell-free system: evidence for involvement of both a mitochondrial and a nuclear tRNA. Mol. Cell. Biol. 2 (1982), 490–497.
-
(1982)
Mol. Cell. Biol.
, vol.2
, pp. 490-497
-
-
Tuite, M.F.1
McLaughlin, C.S.2
-
63
-
-
65249136560
-
Connection between stop codon reassignment and frequent use of shifty stop frameshifting
-
Vallabhaneni, H., Fan-Minogue, H., Bedwell, D.M., Farabaugh, P.J., Connection between stop codon reassignment and frequent use of shifty stop frameshifting. RNA 15 (2009), 889–897.
-
(2009)
RNA
, vol.15
, pp. 889-897
-
-
Vallabhaneni, H.1
Fan-Minogue, H.2
Bedwell, D.M.3
Farabaugh, P.J.4
-
64
-
-
84959036890
-
High frequency of +1 programmed ribosomal frameshifting in Euplotes octocarinatus
-
Wang, R., Xiong, J., Wang, W., Miao, W., Liang, A., High frequency of +1 programmed ribosomal frameshifting in Euplotes octocarinatus. Sci. Rep., 6, 2016, 21139.
-
(2016)
Sci. Rep.
, vol.6
, pp. 21139
-
-
Wang, R.1
Xiong, J.2
Wang, W.3
Miao, W.4
Liang, A.5
-
65
-
-
34547803197
-
PAML 4: phylogenetic analysis by maximum likelihood
-
Yang, Z., PAML 4: phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 24 (2007), 1586–1591.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
|