메뉴 건너뛰기




Volumn 5, Issue 1, 2016, Pages

Binding interaction of a gamma-aminobutyric acid derivative with serum albumin: an insight by fluorescence and molecular modeling analysis

Author keywords

Fluorescence; GABA; Molecular docking; Molecular dynamics; Serum albumin

Indexed keywords


EID: 84978869464     PISSN: None     EISSN: 21931801     Source Type: Journal    
DOI: 10.1186/s40064-016-2752-x     Document Type: Article
Times cited : (23)

References (42)
  • 1
    • 82255192067 scopus 로고    scopus 로고
    • Synthesis and bio-evaluation of human macrophage migration inhibitory factor inhibitor to develop anti-inflammatory agent
    • Alam A, Pal C, Goyal M et al (2011) Synthesis and bio-evaluation of human macrophage migration inhibitory factor inhibitor to develop anti-inflammatory agent. Bioorg Med Chem 19:7365–7373. doi:10.1016/j.bmc.2011.10.056
    • (2011) Bioorg Med Chem , vol.19 , pp. 7365-7373
    • Alam, A.1    Pal, C.2    Goyal, M.3
  • 2
    • 84863795886 scopus 로고    scopus 로고
    • Novel anti-inflammatory activity of epoxyazadiradione against macrophage migration inhibitory factor: inhibition of tautomerase and proinflammatory activities of macrophage migration inhibitory factor
    • Alam A, Haldar S, Thulasiram HV et al (2012) Novel anti-inflammatory activity of epoxyazadiradione against macrophage migration inhibitory factor: inhibition of tautomerase and proinflammatory activities of macrophage migration inhibitory factor. J Biol Chem 287:24844–24861. doi:10.1074/jbc.M112.341321
    • (2012) J Biol Chem , vol.287 , pp. 24844-24861
    • Alam, A.1    Haldar, S.2    Thulasiram, H.V.3
  • 3
    • 33747818624 scopus 로고    scopus 로고
    • PDB_Hydro: incorporating dipolar solvents with variable density in the Poisson-Boltzmann treatment of macromolecule electrostatics
    • Azuara C, Lindahl E, Koehl P et al (2006) PDB_Hydro: incorporating dipolar solvents with variable density in the Poisson-Boltzmann treatment of macromolecule electrostatics. Nucleic Acids Res 34:W38–W42. doi:10.1093/nar/gkl072
    • (2006) Nucleic Acids Res , vol.34 , pp. W38-W42
    • Azuara, C.1    Lindahl, E.2    Koehl, P.3
  • 4
    • 84858283831 scopus 로고    scopus 로고
    • Interaction of Merocyanine 540 with serum albumins: photophysical and binding studies
    • Banerjee M, Pal U, Subudhhi A et al (2012) Interaction of Merocyanine 540 with serum albumins: photophysical and binding studies. J Photochem Photobiol, B 108:23–33. doi:10.1016/j.jphotobiol.2011.12.005
    • (2012) J Photochem Photobiol, B , vol.108 , pp. 23-33
    • Banerjee, M.1    Pal, U.2    Subudhhi, A.3
  • 5
    • 84878010515 scopus 로고    scopus 로고
    • Potent anticancer activity of cystine-based dipeptides and their interaction with serum albumins
    • Banerji B, Pramanik SK, Pal U, Maiti NC (2013) Potent anticancer activity of cystine-based dipeptides and their interaction with serum albumins. Chem Cent J 7:91. doi:10.1186/1752-153X-7-91
    • (2013) Chem Cent J , vol.7 , pp. 91
    • Banerji, B.1    Pramanik, S.K.2    Pal, U.3    Maiti, N.C.4
  • 6
    • 25144517646 scopus 로고    scopus 로고
    • Integrated modeling program, applied chemical theory (IMPACT)
    • Banks JL, Beard HS, Cao Y et al (2005) Integrated modeling program, applied chemical theory (IMPACT). J Comput Chem 26:1752–1780. doi:10.1002/jcc.20292
    • (2005) J Comput Chem , vol.26 , pp. 1752-1780
    • Banks, J.L.1    Beard, H.S.2    Cao, Y.3
  • 8
    • 0034624021 scopus 로고    scopus 로고
    • Binding of the general anesthetics propofol and halothane to human serum albumin. High resolution crystal structures
    • Bhattacharya AA, Curry S, Franks NP (2000) Binding of the general anesthetics propofol and halothane to human serum albumin. High resolution crystal structures. J Biol Chem 275:38731–38738. doi:10.1074/jbc.M005460200
    • (2000) J Biol Chem , vol.275 , pp. 38731-38738
    • Bhattacharya, A.A.1    Curry, S.2    Franks, N.P.3
  • 9
    • 84856201851 scopus 로고    scopus 로고
    • Quantifying the chemical beauty of drugs
    • Bickerton GR, Paolini GV, Besnard J et al (2012) Quantifying the chemical beauty of drugs. Nat Chem 4:90–98. doi:10.1038/nchem.1243
    • (2012) Nat Chem , vol.4 , pp. 90-98
    • Bickerton, G.R.1    Paolini, G.V.2    Besnard, J.3
  • 10
    • 34548283148 scopus 로고    scopus 로고
    • Scalable algorithms for molecular dynamics simulations on commodity clusters. In: Proceedings of the ACM/IEEE SC 2006 conference
    • Bowers KJ, Chow E, Xu H et al (2006) Scalable algorithms for molecular dynamics simulations on commodity clusters. In: Proceedings of the ACM/IEEE SC 2006 conference, pp 43–43
    • (2006) pp 43–43
    • Bowers, K.J.1    Chow, E.2    Xu, H.3
  • 11
    • 0031683467 scopus 로고    scopus 로고
    • Crystal structure of human serum albumin complexed with fatty acid reveals an asymmetric distribution of binding sites
    • Curry S, Mandelkow H, Brick P, Franks N (1998) Crystal structure of human serum albumin complexed with fatty acid reveals an asymmetric distribution of binding sites. Nat Struct Biol 5:827–835. doi:10.1038/1869
    • (1998) Nat Struct Biol , vol.5 , pp. 827-835
    • Curry, S.1    Mandelkow, H.2    Brick, P.3    Franks, N.4
  • 12
    • 77955672334 scopus 로고    scopus 로고
    • A role of GABA analogues in the treatment of neurological diseases
    • Gajcy K, Lochyński S, Librowski T (2010) A role of GABA analogues in the treatment of neurological diseases. Curr Med Chem 17:2338–2347
    • (2010) Curr Med Chem , vol.17 , pp. 2338-2347
    • Gajcy, K.1    Lochyński, S.2    Librowski, T.3
  • 13
    • 84860275453 scopus 로고    scopus 로고
    • Implementing an X-ray validation pipeline for the Protein Data Bank
    • Gore S, Velankar S, Kleywegt GJ (2012) Implementing an X-ray validation pipeline for the Protein Data Bank. Acta Crystallogr D Biol Crystallogr 68:478–483. doi:10.1107/S0907444911050359
    • (2012) Acta Crystallogr D Biol Crystallogr , vol.68 , pp. 478-483
    • Gore, S.1    Velankar, S.2    Kleywegt, G.J.3
  • 14
    • 79960029361 scopus 로고    scopus 로고
    • SwissDock, a protein-small molecule docking web service based on EADock DSS
    • Grosdidier A, Zoete V, Michielin O (2011) SwissDock, a protein-small molecule docking web service based on EADock DSS. Nucleic Acids Res 39:W270–W277. doi:10.1093/nar/gkr366
    • (2011) Nucleic Acids Res , vol.39 , pp. W270-W277
    • Grosdidier, A.1    Zoete, V.2    Michielin, O.3
  • 15
    • 85027939719 scopus 로고    scopus 로고
    • NMR reveals molecular interactions and dynamics of fatty acid binding to albumin
    • Hamilton JA (2013) NMR reveals molecular interactions and dynamics of fatty acid binding to albumin. Biochim Biophys Acta BBA Gen Subj 1830:5418–5426. doi:10.1016/j.bbagen.2013.08.002
    • (2013) Biochim Biophys Acta BBA Gen Subj , vol.1830 , pp. 5418-5426
    • Hamilton, J.A.1
  • 16
    • 84867288643 scopus 로고    scopus 로고
    • Avogadro: an advanced semantic chemical editor, visualization, and analysis platform
    • Hanwell MD, Curtis DE, Lonie DC et al (2012) Avogadro: an advanced semantic chemical editor, visualization, and analysis platform. J Cheminform 4:17. doi:10.1186/1758-2946-4-17
    • (2012) J Cheminform , vol.4 , pp. 17
    • Hanwell, M.D.1    Curtis, D.E.2    Lonie, D.C.3
  • 17
    • 84873714092 scopus 로고    scopus 로고
    • In silico and in vitro characterization of anti-amyloidogenic activity of vitamin K3 analogues for Alzheimer’s disease
    • Huy PDQ, Yu Y-C, Ngo ST et al (2013) In silico and in vitro characterization of anti-amyloidogenic activity of vitamin K3 analogues for Alzheimer’s disease. Biochim Biophys Acta BBA Gen Subj 1830:2960–2969. doi:10.1016/j.bbagen.2012.12.026
    • (2013) Biochim Biophys Acta BBA Gen Subj , vol.1830 , pp. 2960-2969
    • Huy, P.D.Q.1    Yu, Y.-C.2    Ngo, S.T.3
  • 18
    • 84880638556 scopus 로고    scopus 로고
    • Structure-based discovery of fiber-binding compounds that reduce the cytotoxicity of amyloid beta
    • Jiang L, Liu C, Leibly D et al (2013) Structure-based discovery of fiber-binding compounds that reduce the cytotoxicity of amyloid beta. eLife. doi:10.7554/eLife.00857
    • (2013) eLife
    • Jiang, L.1    Liu, C.2    Leibly, D.3
  • 19
    • 84905822105 scopus 로고    scopus 로고
    • GABA from reactive astrocytes impairs memory in mouse models of Alzheimer’s disease
    • Jo S, Yarishkin O, Hwang YJ et al (2014) GABA from reactive astrocytes impairs memory in mouse models of Alzheimer’s disease. Nat Med 20:886–896. doi:10.1038/nm.3639
    • (2014) Nat Med , vol.20 , pp. 886-896
    • Jo, S.1    Yarishkin, O.2    Hwang, Y.J.3
  • 20
    • 1642357706 scopus 로고    scopus 로고
    • The many roles of computation in drug discovery
    • Jorgensen WL (2004) The many roles of computation in drug discovery. Science 303:1813–1818. doi:10.1126/science.1096361
    • (2004) Science , vol.303 , pp. 1813-1818
    • Jorgensen, W.L.1
  • 21
    • 0010386231 scopus 로고    scopus 로고
    • GABA signalling: therapeutic targets for epilepsy, Parkinson’s disease and Huntington’s disease
    • Kleppner SR, Tobin AJ (2001) GABA signalling: therapeutic targets for epilepsy, Parkinson’s disease and Huntington’s disease. Expert Opin Ther Targets 5:219–239. doi:10.1517/14728222.5.2.219
    • (2001) Expert Opin Ther Targets , vol.5 , pp. 219-239
    • Kleppner, S.R.1    Tobin, A.J.2
  • 22
    • 0031024171 scopus 로고    scopus 로고
    • Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings
    • Lipinski CA, Lombardo F, Dominy BW, Feeney PJ (1997) Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings. Adv Drug Deliv Rev 23:3–25. doi:10.1016/S0169-409X(96)00423-1
    • (1997) Adv Drug Deliv Rev , vol.23 , pp. 3-25
    • Lipinski, C.A.1    Lombardo, F.2    Dominy, B.W.3    Feeney, P.J.4
  • 23
    • 84884217594 scopus 로고    scopus 로고
    • Molecular structure of β-amyloid fibrils in Alzheimer’s disease brain tissue
    • Lu J-X, Qiang W, Yau W-M et al (2013) Molecular structure of β-amyloid fibrils in Alzheimer’s disease brain tissue. Cell 154:1257–1268. doi:10.1016/j.cell.2013.08.035
    • (2013) Cell , vol.154 , pp. 1257-1268
    • Lu, J.-X.1    Qiang, W.2    Yau, W.-M.3
  • 24
    • 84861792561 scopus 로고    scopus 로고
    • Structural and immunologic characterization of bovine, horse, and rabbit serum albumins
    • Majorek KA, Porebski PJ, Dayal A et al (2012) Structural and immunologic characterization of bovine, horse, and rabbit serum albumins. Mol Immunol 52:174–182. doi:10.1016/j.molimm.2012.05.011
    • (2012) Mol Immunol , vol.52 , pp. 174-182
    • Majorek, K.A.1    Porebski, P.J.2    Dayal, A.3
  • 25
    • 48449092207 scopus 로고    scopus 로고
    • FireDock: a web server for fast interaction refinement in molecular docking
    • Mashiach E, Schneidman-Duhovny D, Andrusier N et al (2008) FireDock: a web server for fast interaction refinement in molecular docking. Nucleic Acids Res 36:W229–W232. doi:10.1093/nar/gkn186
    • (2008) Nucleic Acids Res , vol.36 , pp. W229-W232
    • Mashiach, E.1    Schneidman-Duhovny, D.2    Andrusier, N.3
  • 26
    • 79959224583 scopus 로고    scopus 로고
    • Molecular docking: a powerful approach for structure-based drug discovery
    • Meng X-Y, Zhang H-X, Mezei M, Cui M (2011) Molecular docking: a powerful approach for structure-based drug discovery. Curr Comput Aided Drug Des 7:146–157
    • (2011) Curr Comput Aided Drug Des , vol.7 , pp. 146-157
    • Meng, X.-Y.1    Zhang, H.-X.2    Mezei, M.3    Cui, M.4
  • 27
    • 33646151957 scopus 로고    scopus 로고
    • Study of protein-ligand binding by fluorescence
    • Möller M, Denicola A (2002) Study of protein-ligand binding by fluorescence. Biochem Mol Biol Educ 30:309–312. doi:10.1002/bmb.2002.494030050089
    • (2002) Biochem Mol Biol Educ , vol.30 , pp. 309-312
    • Möller, M.1    Denicola, A.2
  • 29
    • 70349932423 scopus 로고    scopus 로고
    • AutoDock4 and AutoDockTools4: automated docking with selective receptor flexibility
    • Morris GM, Huey R, Lindstrom W et al (2009) AutoDock4 and AutoDockTools4: automated docking with selective receptor flexibility. J Comput Chem 30:2785–2791. doi:10.1002/jcc.21256
    • (2009) J Comput Chem , vol.30 , pp. 2785-2791
    • Morris, G.M.1    Huey, R.2    Lindstrom, W.3
  • 30
    • 0035186421 scopus 로고    scopus 로고
    • New insights into the role of the GABAA—benzodiazepine receptor in psychiatric disorder
    • Nutt DJ, Malizia AL (2001) New insights into the role of the GABAA—benzodiazepine receptor in psychiatric disorder. Br J Psychiatry 179:390–396. doi:10.1192/bjp.179.5.390
    • (2001) Br J Psychiatry , vol.179 , pp. 390-396
    • Nutt, D.J.1    Malizia, A.L.2
  • 31
    • 80055015790 scopus 로고    scopus 로고
    • Spectrofluorimetric analysis of the interaction of amyloid peptides with neuronal nitric oxide synthase: implications in Alzheimer’s disease
    • Padayachee ER, Whiteley CG (2011) Spectrofluorimetric analysis of the interaction of amyloid peptides with neuronal nitric oxide synthase: implications in Alzheimer’s disease. Biochim Biophys Acta BBA Gen Subj 1810:1136–1140. doi:10.1016/j.bbagen.2011.09.002
    • (2011) Biochim Biophys Acta BBA Gen Subj , vol.1810 , pp. 1136-1140
    • Padayachee, E.R.1    Whiteley, C.G.2
  • 32
    • 84942411987 scopus 로고    scopus 로고
    • Binding interaction of a novel fluorophore with serum albumins: steady state fluorescence perturbation and molecular modeling analysis
    • Pal U, Pramanik SK, Bhattacharya B et al (2015) Binding interaction of a novel fluorophore with serum albumins: steady state fluorescence perturbation and molecular modeling analysis. SpringerPlus 4:548. doi:10.1186/s40064-015-1333-8
    • (2015) SpringerPlus , vol.4 , pp. 548
    • Pal, U.1    Pramanik, S.K.2    Bhattacharya, B.3
  • 33
    • 4444221565 scopus 로고    scopus 로고
    • UCSF Chimera—a visualization system for exploratory research and analysis
    • Pettersen EF, Goddard TD, Huang CC et al (2004) UCSF Chimera—a visualization system for exploratory research and analysis. J Comput Chem 25:1605–1612. doi:10.1002/jcc.20084
    • (2004) J Comput Chem , vol.25 , pp. 1605-1612
    • Pettersen, E.F.1    Goddard, T.D.2    Huang, C.C.3
  • 34
    • 84859519619 scopus 로고    scopus 로고
    • Nickel(II)-Schiff base complex recognizing domain II of bovine and human serum albumin: spectroscopic and docking studies
    • Ray A, Seth BK, Pal U, Basu S (2012) Nickel(II)-Schiff base complex recognizing domain II of bovine and human serum albumin: spectroscopic and docking studies. Spectrochim Acta A Mol Biomol Spectrosc 92:164–174. doi:10.1016/j.saa.2012.02.060
    • (2012) Spectrochim Acta A Mol Biomol Spectrosc , vol.92 , pp. 164-174
    • Ray, A.1    Seth, B.K.2    Pal, U.3    Basu, S.4
  • 35
    • 80054078285 scopus 로고    scopus 로고
    • A new generation of crystallographic validation tools for the Protein Data Bank
    • Read RJ, Adams PD, Arendall WB et al (2011) A new generation of crystallographic validation tools for the Protein Data Bank. Structure 19:1395–1412. doi:10.1016/j.str.2011.08.006
    • (2011) Structure , vol.19 , pp. 1395-1412
    • Read, R.J.1    Adams, P.D.2    Arendall, W.B.3
  • 36
    • 84885468950 scopus 로고    scopus 로고
    • Using bound fatty acids to disclose the functional structure of serum albumin
    • Reichenwallner J, Hinderberger D (2013) Using bound fatty acids to disclose the functional structure of serum albumin. Biochim Biophys Acta BBA Gen Subj 1830:5382–5393. doi:10.1016/j.bbagen.2013.04.031
    • (2013) Biochim Biophys Acta BBA Gen Subj , vol.1830 , pp. 5382-5393
    • Reichenwallner, J.1    Hinderberger, D.2
  • 37
    • 84881539841 scopus 로고    scopus 로고
    • 3D NMR structure of a complex between the amyloid beta peptide (1–40) and the polyphenol ε-viniferin glucoside: implications in Alzheimer’s disease
    • Richard T, Papastamoulis Y, Waffo-Teguo P, Monti J-P (2013) 3D NMR structure of a complex between the amyloid beta peptide (1–40) and the polyphenol ε-viniferin glucoside: implications in Alzheimer’s disease. Biochim Biophys Acta BBA Gen Subj 1830:5068–5074. doi:10.1016/j.bbagen.2013.06.031
    • (2013) Biochim Biophys Acta BBA Gen Subj , vol.1830 , pp. 5068-5074
    • Richard, T.1    Papastamoulis, Y.2    Waffo-Teguo, P.3    Monti, J.-P.4
  • 38
    • 84892948998 scopus 로고    scopus 로고
    • Efficacy of cyclin dependent kinase 4 inhibitors as potent neuroprotective agents against insults relevant to Alzheimer’s disease
    • Sanphui P, Pramanik SK, Chatterjee N et al (2013) Efficacy of cyclin dependent kinase 4 inhibitors as potent neuroprotective agents against insults relevant to Alzheimer’s disease. PLoS ONE 8:e78842. doi:10.1371/journal.pone.0078842
    • (2013) PLoS ONE , vol.8 , pp. e78842
    • Sanphui, P.1    Pramanik, S.K.2    Chatterjee, N.3
  • 39
    • 21644476468 scopus 로고    scopus 로고
    • PatchDock and SymmDock: servers for rigid and symmetric docking
    • Schneidman-Duhovny D, Inbar Y, Nussinov R, Wolfson HJ (2005) PatchDock and SymmDock: servers for rigid and symmetric docking. Nucleic Acids Res 33:W363–W367. doi:10.1093/nar/gki481
    • (2005) Nucleic Acids Res , vol.33 , pp. W363-W367
    • Schneidman-Duhovny, D.1    Inbar, Y.2    Nussinov, R.3    Wolfson, H.J.4
  • 40
    • 33746253976 scopus 로고    scopus 로고
    • Location of high and low affinity fatty acid binding sites on human serum albumin revealed by NMR drug-competition analysis
    • Simard JR, Zunszain PA, Hamilton JA, Curry S (2006) Location of high and low affinity fatty acid binding sites on human serum albumin revealed by NMR drug-competition analysis. J Mol Biol 361:336–351. doi:10.1016/j.jmb.2006.06.028
    • (2006) J Mol Biol , vol.361 , pp. 336-351
    • Simard, J.R.1    Zunszain, P.A.2    Hamilton, J.A.3    Curry, S.4
  • 41
    • 27344459398 scopus 로고    scopus 로고
    • Virtual computational chemistry laboratory—design and description
    • Tetko IV, Gasteiger J, Todeschini R et al (2005) Virtual computational chemistry laboratory—design and description. J Comput Aided Mol Des 19:453–463. doi:10.1007/s10822-005-8694-y
    • (2005) J Comput Aided Mol Des , vol.19 , pp. 453-463
    • Tetko, I.V.1    Gasteiger, J.2    Todeschini, R.3
  • 42
    • 76149120388 scopus 로고    scopus 로고
    • AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading
    • Trott O, Olson AJ (2010) AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading. J Comput Chem 31:455–461. doi:10.1002/jcc.21334
    • (2010) J Comput Chem , vol.31 , pp. 455-461
    • Trott, O.1    Olson, A.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.