-
1
-
-
84978873701
-
-
Centers for Disease Control and Prevention. Antibiotic Resistance Threats in the United States, 2013 [Internet]. 2013. Available:
-
Centers for Disease Control and Prevention. Antibiotic Resistance Threats in the United States, 2013 [Internet]. 2013. Available: http://www.cdc.gov/drugresistance/threat-report-2013/index.html
-
-
-
-
2
-
-
0029963621
-
Bacteriolytic effect of membrane vesicles from Pseudomonas aeruginosa on other bacteria including pathogens: conceptually new antibiotics
-
8631663, .;:–
-
Kadurugamuwa JL, Beveridge TJ, Bacteriolytic effect of membrane vesicles from Pseudomonas aeruginosa on other bacteria including pathogens: conceptually new antibiotics. J Bacteriol. 1996;178: 2767–2774. 8631663
-
(1996)
J Bacteriol
, vol.178
, pp. 2767-2774
-
-
Kadurugamuwa, J.L.1
Beveridge, T.J.2
-
3
-
-
27744480818
-
Bacterial outer membrane vesicles and the host-pathogen interaction
-
16291643, .;:–
-
Kuehn MJ, Bacterial outer membrane vesicles and the host-pathogen interaction. Genes Dev. 2005;19: 2645–2655. doi: 10.1101/gad.129990516291643
-
(2005)
Genes Dev
, vol.19
, pp. 2645-2655
-
-
Kuehn, M.J.1
-
4
-
-
0025329383
-
DNA Is Packaged within Membrane-Derived Vesicles of Gram-Negative but Not Gram-Positive Bacteria
-
16348232, .;:–
-
Dorward DW, Garon CF, DNA Is Packaged within Membrane-Derived Vesicles of Gram-Negative but Not Gram-Positive Bacteria. Appl Environ Microbiol. 1990;56: 1960–1962. 16348232
-
(1990)
Appl Environ Microbiol
, vol.56
, pp. 1960-1962
-
-
Dorward, D.W.1
Garon, C.F.2
-
5
-
-
4344646313
-
DNA-containing membrane vesicles of Pseudomonas aeruginosa PAO1 and their genetic transformation potential
-
15256559, .;:–
-
Renelli M, DNA-containing membrane vesicles of Pseudomonas aeruginosa PAO1 and their genetic transformation potential. Microbiology. 2004;150: 2161–2169. doi: 10.1099/mic.0.26841-015256559
-
(2004)
Microbiology
, vol.150
, pp. 2161-2169
-
-
Renelli, M.1
-
6
-
-
77749309281
-
Virulence and Immunomodulatory Roles of Bacterial Outer Membrane Vesicles
-
20197500, .;:–
-
Ellis TN, Kuehn MJ, Virulence and Immunomodulatory Roles of Bacterial Outer Membrane Vesicles. Microbiol Mol Biol Rev. 2010;74: 81–94. doi: 10.1128/MMBR.00031-0920197500
-
(2010)
Microbiol Mol Biol Rev
, vol.74
, pp. 81-94
-
-
Ellis, T.N.1
Kuehn, M.J.2
-
7
-
-
0031663159
-
Gram-negative bacteria produce membrane vesicles which are capable of killing other bacteria
-
9765585, .;:–
-
Li Z, Clarke AJ, Beveridge TJ, Gram-negative bacteria produce membrane vesicles which are capable of killing other bacteria. J Bacteriol. 1998;180: 5478–5483. 9765585
-
(1998)
J Bacteriol
, vol.180
, pp. 5478-5483
-
-
Li, Z.1
Clarke, A.J.2
Beveridge, T.J.3
-
8
-
-
84870749192
-
Offense and defense: microbial membrane vesicles play both ways
-
23123555, .;:–
-
MacDonald IA, Kuehn MJ, Offense and defense: microbial membrane vesicles play both ways. Res Microbiol. 2012;163: 607–618. doi: 10.1016/j.resmic.2012.10.02023123555
-
(2012)
Res Microbiol
, vol.163
, pp. 607-618
-
-
MacDonald, I.A.1
Kuehn, M.J.2
-
9
-
-
25144456544
-
Membrane vesicles traffic signals and facilitate group activities in a prokaryote
-
16163359, .;:–
-
Mashburn LM, Whiteley M, Membrane vesicles traffic signals and facilitate group activities in a prokaryote. Nature. 2005;437: 422–425. doi: 10.1038/nature0392516163359
-
(2005)
Nature
, vol.437
, pp. 422-425
-
-
Mashburn, L.M.1
Whiteley, M.2
-
10
-
-
84929298167
-
Colitogenic Bacteroides thetaiotaomicron Antigens Access Host Immune Cells in a Sulfatase-Dependent Manner via Outer Membrane Vesicles
-
25974305, ..;:–
-
Hickey CA, Kuhn KA, Donermeyer DL, Porter NT, Jin C, Cameron EA, et al. Colitogenic Bacteroides thetaiotaomicron Antigens Access Host Immune Cells in a Sulfatase-Dependent Manner via Outer Membrane Vesicles. Cell Host Microbe. 2015;17: 672–680. doi: 10.1016/j.chom.2015.04.00225974305
-
(2015)
Cell Host Microbe
, vol.17
, pp. 672-680
-
-
Hickey, C.A.1
Kuhn, K.A.2
Donermeyer, D.L.3
Porter, N.T.4
Jin, C.5
Cameron, E.A.6
-
11
-
-
66349107694
-
Long-Distance Delivery of Bacterial Virulence Factors by Pseudomonas aeruginosa Outer Membrane Vesicles
-
19360133
-
Bomberger JM, MacEachran DP, Coutermarsh BA, Ye S, O’Toole GA, Stanton BA, Ausubel FM, Long-Distance Delivery of Bacterial Virulence Factors by Pseudomonas aeruginosa Outer Membrane Vesicles. PLoS Pathog. 2009;5: e1000382. doi: 10.1371/journal.ppat.100038219360133
-
(2009)
PLoS Pathog
, vol.5
, pp. e1000382
-
-
Bomberger, J.M.1
MacEachran, D.P.2
Coutermarsh, B.A.3
Ye, S.4
O’Toole, G.A.5
Stanton, B.A.6
Ausubel, F.M.7
-
12
-
-
0029009438
-
Virulence factors are released from Pseudomonas aeruginosa in association with membrane vesicles during normal growth and exposure to gentamicin: a novel mechanism of enzyme secretion
-
7608073, .;:–
-
Kadurugamuwa JL, Beveridge TJ, Virulence factors are released from Pseudomonas aeruginosa in association with membrane vesicles during normal growth and exposure to gentamicin: a novel mechanism of enzyme secretion. J Bacteriol. 1995;177: 3998–4008. 7608073
-
(1995)
J Bacteriol
, vol.177
, pp. 3998-4008
-
-
Kadurugamuwa, J.L.1
Beveridge, T.J.2
-
13
-
-
62149102212
-
Pseudomonas aeruginosa vesicles associate with and are internalized by human lung epithelial cells
-
19192306
-
Bauman SJ, Kuehn MJ, Pseudomonas aeruginosa vesicles associate with and are internalized by human lung epithelial cells. BMC Microbiol. 2009;9: 26. doi: 10.1186/1471-2180-9-2619192306
-
(2009)
BMC Microbiol
, vol.9
, pp. 26
-
-
Bauman, S.J.1
Kuehn, M.J.2
-
14
-
-
33749353869
-
Purification of outer membrane vesicles from Pseudomonas aeruginosa and their activation of an IL-8 response
-
16807039, .;:–
-
Bauman SJ, Kuehn MJ, Purification of outer membrane vesicles from Pseudomonas aeruginosa and their activation of an IL-8 response. Microbes Infect. 2006;8: 2400–2408. doi: 10.1016/j.micinf.2006.05.00116807039
-
(2006)
Microbes Infect
, vol.8
, pp. 2400-2408
-
-
Bauman, S.J.1
Kuehn, M.J.2
-
15
-
-
84886622906
-
Pulmonary Inflammation Induced by Bacteria-Free Outer Membrane Vesicles from Pseudomonas aeruginosa
-
23713467, ..;:–
-
Park K-S, Lee J, Jang SC, Kim SR, Jang MH, Lötvall J, et al. Pulmonary Inflammation Induced by Bacteria-Free Outer Membrane Vesicles from Pseudomonas aeruginosa. Am J Respir Cell Mol Biol. 2013;49: 637–645. doi: 10.1165/rcmb.2012-0370OC23713467
-
(2013)
Am J Respir Cell Mol Biol
, vol.49
, pp. 637-645
-
-
Park, K.-S.1
Lee, J.2
Jang, S.C.3
Kim, S.R.4
Jang, M.H.5
Lötvall, J.6
-
16
-
-
34548223200
-
Dissection of a Signaling Pathway by Which Pathogen-associated Molecular Patterns Recruit the JNK and p38 MAPKs and Trigger Cytokine Release
-
17584736, .;:–
-
Zhong J, Kyriakis JM, Dissection of a Signaling Pathway by Which Pathogen-associated Molecular Patterns Recruit the JNK and p38 MAPKs and Trigger Cytokine Release. J Biol Chem. 2007;282: 24246–24254. doi: 10.1074/jbc.M70342220017584736
-
(2007)
J Biol Chem
, vol.282
, pp. 24246-24254
-
-
Zhong, J.1
Kyriakis, J.M.2
-
17
-
-
81155152426
-
Innate immune responses to Pseudomonas aeruginosa infection
-
21839853, .;:–
-
Lavoie EG, Wangdi T, Kazmierczak BI, Innate immune responses to Pseudomonas aeruginosa infection. Microbes Infect. 2011;13: 1133–1145. doi: 10.1016/j.micinf.2011.07.01121839853
-
(2011)
Microbes Infect
, vol.13
, pp. 1133-1145
-
-
Lavoie, E.G.1
Wangdi, T.2
Kazmierczak, B.I.3
-
18
-
-
84900564123
-
Mechanisms of phagocytosis and host clearance of Pseudomonas aeruginosa
-
.;:–
-
Lovewell RR, Patankar YR, Berwin B, Mechanisms of phagocytosis and host clearance of Pseudomonas aeruginosa. AJP Lung Cell Mol Physiol. 2014;306: L591–L603. doi: 10.1152/ajplung.00335.2013
-
(2014)
AJP Lung Cell Mol Physiol
, vol.306
, pp. L591-L603
-
-
Lovewell, R.R.1
Patankar, Y.R.2
Berwin, B.3
-
19
-
-
79953283054
-
A Pseudomonas aeruginosa Toxin that Hijacks the Host Ubiquitin Proteolytic System
-
21455491
-
Bomberger JM, Ye S, MacEachran DP, Koeppen K, Barnaby RL, O’Toole GA, Rohde J, et al. A Pseudomonas aeruginosa Toxin that Hijacks the Host Ubiquitin Proteolytic System. PLoS Pathog. 2011;7: e1001325. doi: 10.1371/journal.ppat.100132521455491
-
(2011)
PLoS Pathog
, vol.7
, pp. e1001325
-
-
Bomberger, J.M.1
Ye, S.2
MacEachran, D.P.3
Koeppen, K.4
Barnaby, R.L.5
O’Toole, G.A.6
Rohde, J.7
-
20
-
-
84891699352
-
Pseudomonas aeruginosa Cif Protein Enhances the Ubiquitination and Proteasomal Degradation of the Transporter Associated with Antigen Processing (TAP) and Reduces Major Histocompatibility Complex (MHC) Class I Antigen Presentation
-
24247241, ..;:–
-
Bomberger JM, Ely KH, Bangia N, Ye S, Green KA, Green WR, et al. Pseudomonas aeruginosa Cif Protein Enhances the Ubiquitination and Proteasomal Degradation of the Transporter Associated with Antigen Processing (TAP) and Reduces Major Histocompatibility Complex (MHC) Class I Antigen Presentation. J Biol Chem. 2014;289: 152–162. doi: 10.1074/jbc.M113.45927124247241
-
(2014)
J Biol Chem
, vol.289
, pp. 152-162
-
-
Bomberger, J.M.1
Ely, K.H.2
Bangia, N.3
Ye, S.4
Green, K.A.5
Green, W.R.6
-
21
-
-
0026506574
-
The interaction of naturally elaborated blebs from serum-susceptible and serum-resistant strains of Neisseria gonorrhoeae with normal human serum
-
1574002, .;:–
-
Pettit RK, Judd RC, The interaction of naturally elaborated blebs from serum-susceptible and serum-resistant strains of Neisseria gonorrhoeae with normal human serum. Mol Microbiol. 1992;6: 729–734. 1574002
-
(1992)
Mol Microbiol
, vol.6
, pp. 729-734
-
-
Pettit, R.K.1
Judd, R.C.2
-
22
-
-
78651393562
-
Selective sorting of cargo proteins into bacterial membrane vesicles
-
21056982, ..;:–
-
Haurat MF, Aduse-Opoku J, Rangarajan M, Dorobantu L, Gray MR, Curtis MA, et al. Selective sorting of cargo proteins into bacterial membrane vesicles. J Biol Chem. 2011;286: 1269–1276. doi: 10.1074/jbc.M110.18574421056982
-
(2011)
J Biol Chem
, vol.286
, pp. 1269-1276
-
-
Haurat, M.F.1
Aduse-Opoku, J.2
Rangarajan, M.3
Dorobantu, L.4
Gray, M.R.5
Curtis, M.A.6
-
23
-
-
84856557095
-
The Pseudomonas aeruginosa Transcriptome in Planktonic Cultures and Static Biofilms Using RNA Sequencing
-
22319605
-
Dötsch A, Eckweiler D, Schniederjans M, Zimmermann A, Jensen V, Scharfe M, Semsey S, et al. The Pseudomonas aeruginosa Transcriptome in Planktonic Cultures and Static Biofilms Using RNA Sequencing. PLoS ONE. 2012;7: e31092. doi: 10.1371/journal.pone.003109222319605
-
(2012)
PLoS ONE
, vol.7
, pp. e31092
-
-
Dötsch, A.1
Eckweiler, D.2
Schniederjans, M.3
Zimmermann, A.4
Jensen, V.5
Scharfe, M.6
Semsey, S.7
-
24
-
-
79959273668
-
Small RNAs as regulators of primary and secondary metabolism in Pseudomonas species
-
21607656, .;:–
-
Sonnleitner E, Haas D, Small RNAs as regulators of primary and secondary metabolism in Pseudomonas species. Appl Microbiol Biotechnol. 2011;91: 63–79. doi: 10.1007/s00253-011-3332-121607656
-
(2011)
Appl Microbiol Biotechnol
, vol.91
, pp. 63-79
-
-
Sonnleitner, E.1
Haas, D.2
-
25
-
-
84866924923
-
The Single-Nucleotide Resolution Transcriptome of Pseudomonas aeruginosa Grown in Body Temperature
-
23028334
-
Wurtzel O, Yoder-Himes DR, Han K, Dandekar AA, Edelheit S, Greenberg EP, Deretic V, et al. The Single-Nucleotide Resolution Transcriptome of Pseudomonas aeruginosa Grown in Body Temperature. PLoS Pathog. 2012;8: e1002945. doi: 10.1371/journal.ppat.100294523028334
-
(2012)
PLoS Pathog
, vol.8
, pp. e1002945
-
-
Wurtzel, O.1
Yoder-Himes, D.R.2
Han, K.3
Dandekar, A.A.4
Edelheit, S.5
Greenberg, E.P.6
Deretic, V.7
-
26
-
-
80053019485
-
Regulation by Small RNAs in Bacteria: Expanding Frontiers
-
21925377, .;:–
-
Storz G, Vogel J, Wassarman KM, Regulation by Small RNAs in Bacteria: Expanding Frontiers. Mol Cell. 2011;43: 880–891. doi: 10.1016/j.molcel.2011.08.02221925377
-
(2011)
Mol Cell
, vol.43
, pp. 880-891
-
-
Storz, G.1
Vogel, J.2
Wassarman, K.M.3
-
27
-
-
84856054890
-
Quorum-sensing non-coding small RNAs use unique pairing regions to differentially control mRNA targets: Qrr sRNAs activate AphA
-
22229925, .;:–
-
Shao Y, Bassler BL, Quorum-sensing non-coding small RNAs use unique pairing regions to differentially control mRNA targets: Qrr sRNAs activate AphA. Mol Microbiol. 2012;83: 599–611. 22229925
-
(2012)
Mol Microbiol
, vol.83
, pp. 599-611
-
-
Shao, Y.1
Bassler, B.L.2
-
28
-
-
58149375464
-
Small regulatory non-coding RNAs in bacteria: physiology and mechanistic aspects
-
19076068, .;:–
-
Repoila F, Darfeuille F, Small regulatory non-coding RNAs in bacteria: physiology and mechanistic aspects. Biol Cell. 2009;101: 117–131. doi: 10.1042/BC2007013719076068
-
(2009)
Biol Cell
, vol.101
, pp. 117-131
-
-
Repoila, F.1
Darfeuille, F.2
-
29
-
-
84871586107
-
Hints of tRNA-Derived Small RNAs Role in RNA Silencing Mechanisms
-
24705078, .;:–
-
Garcia-Silva MR, Cabrera-Cabrera F, Güida MC, Cayota A, Hints of tRNA-Derived Small RNAs Role in RNA Silencing Mechanisms. Genes. 2012;3: 603–614. doi: 10.3390/genes304060324705078
-
(2012)
Genes
, vol.3
, pp. 603-614
-
-
Garcia-Silva, M.R.1
Cabrera-Cabrera, F.2
Güida, M.C.3
Cayota, A.4
-
30
-
-
72749089855
-
A novel class of small RNAs: tRNA-derived RNA fragments (tRFs)
-
19933153, .;:–
-
Lee YS, Shibata Y, Malhotra A, Dutta A, A novel class of small RNAs: tRNA-derived RNA fragments (tRFs). Genes Dev. 2009;23: 2639–2649. doi: 10.1101/gad.183760919933153
-
(2009)
Genes Dev
, vol.23
, pp. 2639-2649
-
-
Lee, Y.S.1
Shibata, Y.2
Malhotra, A.3
Dutta, A.4
-
31
-
-
84921448966
-
Meta-analysis of tRNA derived RNA fragments reveals that they are evolutionarily conserved and associate with AGO proteins to recognize specific RNA targets
-
25270025
-
Kumar P, Anaya J, Mudunuri SB, Dutta A, Meta-analysis of tRNA derived RNA fragments reveals that they are evolutionarily conserved and associate with AGO proteins to recognize specific RNA targets. BMC Biol. 2014;12: 78. doi: 10.1186/s12915-014-0078-025270025
-
(2014)
BMC Biol
, vol.12
, pp. 78
-
-
Kumar, P.1
Anaya, J.2
Mudunuri, S.B.3
Dutta, A.4
-
32
-
-
84872870536
-
tRNA-derived microRNA modulates proliferation and the DNA damage response and is down-regulated in B cell lymphoma
-
23297232, ..;:–
-
Maute RL, Schneider C, Sumazin P, Holmes A, Califano A, Basso K, et al. tRNA-derived microRNA modulates proliferation and the DNA damage response and is down-regulated in B cell lymphoma. Proc Natl Acad Sci U S A. 2013;110: 1404–1409. doi: 10.1073/pnas.120676111023297232
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 1404-1409
-
-
Maute, R.L.1
Schneider, C.2
Sumazin, P.3
Holmes, A.4
Califano, A.5
Basso, K.6
-
33
-
-
84926407292
-
The extracellular RNA complement of Escherichia coli
-
..;:–
-
Ghosal A, Upadhyaya BB, Fritz JV, Heintz-Buschart A, Desai MS, Yusuf D, et al. The extracellular RNA complement of Escherichia coli. MicrobiologyOpen. 2015;4: 252–266. doi: 10.1002/mbo3.235
-
(2015)
MicrobiologyOpen
, vol.4
, pp. 252-266
-
-
Ghosal, A.1
Upadhyaya, B.B.2
Fritz, J.V.3
Heintz-Buschart, A.4
Desai, M.S.5
Yusuf, D.6
-
34
-
-
84928569272
-
Functional Advantages of Porphyromonas gingivalis Vesicles
-
25897780
-
Ho M-H, Chen C-H, Goodwin JS, Wang B-Y, Xie H, Kreth J, Functional Advantages of Porphyromonas gingivalis Vesicles. PLOS ONE. 2015;10: e0123448. doi: 10.1371/journal.pone.012344825897780
-
(2015)
PLOS ONE
, vol.10
, pp. e0123448
-
-
Ho, M.-H.1
Chen, C.-H.2
Goodwin, J.S.3
Wang, B.-Y.4
Xie, H.5
Kreth, J.6
-
35
-
-
84944810483
-
Membrane vesicle-mediated release of bacterial RNA
-
26483327
-
Sjöström AE, Sandblad L, Uhlin BE, Wai SN, Membrane vesicle-mediated release of bacterial RNA. Sci Rep. 2015;5: 15329. doi: 10.1038/srep1532926483327
-
(2015)
Sci Rep
, vol.5
, pp. 15329
-
-
Sjöström, A.E.1
Sandblad, L.2
Uhlin, B.E.3
Wai, S.N.4
-
36
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
9254694, ..;:–
-
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997;25: 3389–3402. 9254694
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
-
37
-
-
0842321501
-
MicroRNA targets in Drosophila
-
14709173
-
Enright AJ, John B, Gaul U, Tuschl T, Sander C, Marks DS, MicroRNA targets in Drosophila. Genome Biol. 2003;5: R1. doi: 10.1186/gb-2003-5-1-r114709173
-
(2003)
Genome Biol
, vol.5
, pp. R1
-
-
Enright, A.J.1
John, B.2
Gaul, U.3
Tuschl, T.4
Sander, C.5
Marks, D.S.6
-
38
-
-
1542317578
-
Species-specific recognition of single-stranded RNA via toll-like receptor 7 and 8
-
14976262, ..;:–
-
Heil F, Hemmi H, Hochrein H, Ampenberger F, Kirschning C, Akira S, et al. Species-specific recognition of single-stranded RNA via toll-like receptor 7 and 8. Science. 2004;303: 1526–1529. doi: 10.1126/science.109362014976262
-
(2004)
Science
, vol.303
, pp. 1526-1529
-
-
Heil, F.1
Hemmi, H.2
Hochrein, H.3
Ampenberger, F.4
Kirschning, C.5
Akira, S.6
-
39
-
-
84906960113
-
Search for MicroRNAs Expressed by Intracellular Bacterial Pathogens in Infected Mammalian Cells
-
25184567
-
Furuse Y, Finethy R, Saka HA, Xet-Mull AM, Sisk DM, Smith KLJ, Rudel T, et al. Search for MicroRNAs Expressed by Intracellular Bacterial Pathogens in Infected Mammalian Cells. PLoS ONE. 2014;9: e106434. doi: 10.1371/journal.pone.010643425184567
-
(2014)
PLoS ONE
, vol.9
, pp. e106434
-
-
Furuse, Y.1
Finethy, R.2
Saka, H.A.3
Xet-Mull, A.M.4
Sisk, D.M.5
Smith, K.L.J.6
Rudel, T.7
-
41
-
-
84908123897
-
Bacterial and cellular RNAs at work during Listeria infection
-
25340833, .;:–
-
Sesto N, Koutero M, Cossart P, Bacterial and cellular RNAs at work during Listeria infection. Future Microbiol. 2014;9: 1025–1037. doi: 10.2217/fmb.14.7925340833
-
(2014)
Future Microbiol
, vol.9
, pp. 1025-1037
-
-
Sesto, N.1
Koutero, M.2
Cossart, P.3
-
42
-
-
84929291867
-
Exosomal RNA from Mycobacterium tuberculosis -Infected Cells Is Functional in Recipient Macrophages: Exosomal RNA from M. tuberculosis -Infected Cells
-
25753779, .;:–
-
Singh PP, Li L, Schorey JS, Exosomal RNA from Mycobacterium tuberculosis -Infected Cells Is Functional in Recipient Macrophages: Exosomal RNA from M. tuberculosis -Infected Cells. Traffic. 2015;16: 555–571. 25753779
-
(2015)
Traffic
, vol.16
, pp. 555-571
-
-
Singh, P.P.1
Li, L.2
Schorey, J.S.3
-
43
-
-
84901633244
-
Prediction of Bacterial microRNAs and possible targets in human cell transcriptome
-
24871974, .;:–
-
Shmaryahu A, Carrasco M, Valenzuela PDT, Prediction of Bacterial microRNAs and possible targets in human cell transcriptome. J Microbiol. 2014;52: 482–489. doi: 10.1007/s12275-014-3658-324871974
-
(2014)
J Microbiol
, vol.52
, pp. 482-489
-
-
Shmaryahu, A.1
Carrasco, M.2
Valenzuela, P.D.T.3
-
44
-
-
77956627010
-
Naturally Produced Outer Membrane Vesicles from Pseudomonas aeruginosa Elicit a Potent Innate Immune Response via Combined Sensing of Both Lipopolysaccharide and Protein Components
-
20605984, .;:–
-
Ellis TN, Leiman SA, Kuehn MJ, Naturally Produced Outer Membrane Vesicles from Pseudomonas aeruginosa Elicit a Potent Innate Immune Response via Combined Sensing of Both Lipopolysaccharide and Protein Components. Infect Immun. 2010;78: 3822–3831. doi: 10.1128/IAI.00433-1020605984
-
(2010)
Infect Immun
, vol.78
, pp. 3822-3831
-
-
Ellis, T.N.1
Leiman, S.A.2
Kuehn, M.J.3
-
45
-
-
84861000861
-
Comparative Profiling of Pseudomonas aeruginosa Strains Reveals Differential Expression of Novel Unique and Conserved Small RNAs
-
22590564
-
Ferrara S, Brugnoli M, De Bonis A, Righetti F, Delvillani F, Dehò G, Cornelis P, et al. Comparative Profiling of Pseudomonas aeruginosa Strains Reveals Differential Expression of Novel Unique and Conserved Small RNAs. PLoS ONE. 2012;7: e36553. doi: 10.1371/journal.pone.003655322590564
-
(2012)
PLoS ONE
, vol.7
, pp. e36553
-
-
Ferrara, S.1
Brugnoli, M.2
De Bonis, A.3
Righetti, F.4
Delvillani, F.5
Dehò, G.6
Cornelis, P.7
-
46
-
-
84864379915
-
Genome-wide identification of novel small RNAs in Pseudomonas aeruginosa: Small RNAs in Pseudomonas aeruginosa
-
22533370, .;:–
-
Gómez-Lozano M, Marvig RL, Molin S, Long KS, Genome-wide identification of novel small RNAs in Pseudomonas aeruginosa: Small RNAs in Pseudomonas aeruginosa. Environ Microbiol. 2012;14: 2006–2016. 22533370
-
(2012)
Environ Microbiol
, vol.14
, pp. 2006-2016
-
-
Gómez-Lozano, M.1
Marvig, R.L.2
Molin, S.3
Long, K.S.4
-
47
-
-
84924758020
-
Diversity of small RNAs expressed in P seudomonas species: Conservation of small RNAs in Pseudomonas
-
25394275, .;:–
-
Gómez-Lozano M, Marvig RL, Molina-Santiago C, Tribelli PM, Ramos J-L, Molin S, Diversity of small RNAs expressed in P seudomonas species: Conservation of small RNAs in Pseudomonas. Environ Microbiol Rep. 2015;7: 227–236. 25394275
-
(2015)
Environ Microbiol Rep
, vol.7
, pp. 227-236
-
-
Gómez-Lozano, M.1
Marvig, R.L.2
Molina-Santiago, C.3
Tribelli, P.M.4
Ramos, J.-L.5
Molin, S.6
-
48
-
-
84903160226
-
Exosomes in human semen carry a distinctive repertoire of small non-coding RNAs with potential regulatory functions
-
24838567, ..;:–
-
Vojtech L, Woo S, Hughes S, Levy C, Ballweber L, Sauteraud RP, et al. Exosomes in human semen carry a distinctive repertoire of small non-coding RNAs with potential regulatory functions. Nucleic Acids Res. 2014;42: 7290–7304. doi: 10.1093/nar/gku34724838567
-
(2014)
Nucleic Acids Res
, vol.42
, pp. 7290-7304
-
-
Vojtech, L.1
Woo, S.2
Hughes, S.3
Levy, C.4
Ballweber, L.5
Sauteraud, R.P.6
-
49
-
-
36549003153
-
Mycobacterium bovis BCG Toll-like receptors 2 and 4 cooperation increases the innate epithelial immune response
-
18067993, .;:–
-
Méndez-Samperio P, Belmont L, Miranda E, Mycobacterium bovis BCG Toll-like receptors 2 and 4 cooperation increases the innate epithelial immune response. Arch Med Res. 2008;39: 33–39. doi: 10.1016/j.arcmed.2007.06.01918067993
-
(2008)
Arch Med Res
, vol.39
, pp. 33-39
-
-
Méndez-Samperio, P.1
Belmont, L.2
Miranda, E.3
-
50
-
-
84865781286
-
Prevalence of streptococci and increased polymicrobial diversity associated with cystic fibrosis patient stability
-
22753064, ..;:–
-
Filkins LM, Hampton TH, Gifford AH, Gross MJ, Hogan DA, Sogin ML, et al. Prevalence of streptococci and increased polymicrobial diversity associated with cystic fibrosis patient stability. J Bacteriol. 2012;194: 4709–4717. doi: 10.1128/JB.00566-1222753064
-
(2012)
J Bacteriol
, vol.194
, pp. 4709-4717
-
-
Filkins, L.M.1
Hampton, T.H.2
Gifford, A.H.3
Gross, M.J.4
Hogan, D.A.5
Sogin, M.L.6
-
51
-
-
0031803840
-
TonB-dependent iron acquisition: mechanisms of siderophore-mediated active transport†
-
9643536, .;:–
-
Moeck GS, Coulton JW, TonB-dependent iron acquisition: mechanisms of siderophore-mediated active transport†. Mol Microbiol. 1998;28: 675–681. 9643536
-
(1998)
Mol Microbiol
, vol.28
, pp. 675-681
-
-
Moeck, G.S.1
Coulton, J.W.2
-
52
-
-
34547645814
-
The Pseudomonas aeruginosa secreted protein PA2934 decreases apical membrane expression of the cystic fibrosis transmembrane conductance regulator
-
17502391, ..;:–
-
MacEachran DP, Ye S, Bomberger JM, Hogan DA, Swiatecka-Urban A, Stanton BA, et al. The Pseudomonas aeruginosa secreted protein PA2934 decreases apical membrane expression of the cystic fibrosis transmembrane conductance regulator. Infect Immun. 2007;75: 3902–3912. doi: 10.1128/IAI.00338-0717502391
-
(2007)
Infect Immun
, vol.75
, pp. 3902-3912
-
-
MacEachran, D.P.1
Ye, S.2
Bomberger, J.M.3
Hogan, D.A.4
Swiatecka-Urban, A.5
Stanton, B.A.6
-
54
-
-
0036081355
-
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
-
11752295, .;:–
-
Edgar R, Domrachev M, Lash AE, Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res. 2002;30: 207–210. 11752295
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 207-210
-
-
Edgar, R.1
Domrachev, M.2
Lash, A.E.3
-
55
-
-
48449095385
-
The Vienna RNA websuite
-
18424795, .;:–
-
Gruber AR, Lorenz R, Bernhart SH, Neuböck R, Hofacker IL, The Vienna RNA websuite. Nucleic Acids Res. 2008;36: W70–74. doi: 10.1093/nar/gkn18818424795
-
(2008)
Nucleic Acids Res
, vol.36
, pp. W70-74
-
-
Gruber, A.R.1
Lorenz, R.2
Bernhart, S.H.3
Neuböck, R.4
Hofacker, I.L.5
-
56
-
-
84870502577
-
Human nasal and tracheo-bronchial respiratory epithelial cell culture
-
.;:–
-
Fulcher ML, Randell SH, Human nasal and tracheo-bronchial respiratory epithelial cell culture. Methods Mol Biol Clifton NJ. 2013;945: 109–121. doi: 10.1007/978-1-62703-125-7_8
-
(2013)
Methods Mol Biol Clifton NJ
, vol.945
, pp. 109-121
-
-
Fulcher, M.L.1
Randell, S.H.2
-
57
-
-
80052528051
-
Primary epithelial cell models for cystic fibrosis research
-
.;:–
-
Randell SH, Fulcher ML, O’Neal W, Olsen JC, Primary epithelial cell models for cystic fibrosis research. Methods Mol Biol Clifton NJ. 2011;742: 285–310. doi: 10.1007/978-1-61779-120-8_18
-
(2011)
Methods Mol Biol Clifton NJ
, vol.742
, pp. 285-310
-
-
Randell, S.H.1
Fulcher, M.L.2
O’Neal, W.3
Olsen, J.C.4
-
58
-
-
64749108158
-
Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics
-
19300442, .;:–
-
Boersema PJ, Raijmakers R, Lemeer S, Mohammed S, Heck AJR, Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics. Nat Protoc. 2009;4: 484–494. doi: 10.1038/nprot.2009.2119300442
-
(2009)
Nat Protoc
, vol.4
, pp. 484-494
-
-
Boersema, P.J.1
Raijmakers, R.2
Lemeer, S.3
Mohammed, S.4
Heck, A.J.R.5
-
59
-
-
84859385670
-
High-pH reversed-phase chromatography with fraction concatenation for 2D proteomic analysis
-
22462785, .;:–
-
Yang F, Shen Y, Camp DG, Smith RD, High-pH reversed-phase chromatography with fraction concatenation for 2D proteomic analysis. Expert Rev Proteomics. 2012;9: 129–134. doi: 10.1586/epr.12.1522462785
-
(2012)
Expert Rev Proteomics
, vol.9
, pp. 129-134
-
-
Yang, F.1
Shen, Y.2
Camp, D.G.3
Smith, R.D.4
-
60
-
-
84890470098
-
Novel parallelized quadrupole/linear ion trap/Orbitrap tribrid mass spectrometer improving proteome coverage and peptide identification rates
-
24251866, ..;:–
-
Senko MW, Remes PM, Canterbury JD, Mathur R, Song Q, Eliuk SM, et al. Novel parallelized quadrupole/linear ion trap/Orbitrap tribrid mass spectrometer improving proteome coverage and peptide identification rates. Anal Chem. 2013;85: 11710–11714. doi: 10.1021/ac403115c24251866
-
(2013)
Anal Chem
, vol.85
, pp. 11710-11714
-
-
Senko, M.W.1
Remes, P.M.2
Canterbury, J.D.3
Mathur, R.4
Song, Q.5
Eliuk, S.M.6
-
61
-
-
84872371907
-
Comet: an open-source MS/MS sequence database search tool
-
23148064, .;:–
-
Eng JK, Jahan TA, Hoopmann MR, Comet: an open-source MS/MS sequence database search tool. Proteomics. 2013;13: 22–24. doi: 10.1002/pmic.20120043923148064
-
(2013)
Proteomics
, vol.13
, pp. 22-24
-
-
Eng, J.K.1
Jahan, T.A.2
Hoopmann, M.R.3
-
62
-
-
33847630405
-
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
-
17327847, .;:–
-
Elias JE, Gygi SP, Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry. Nat Methods. 2007;4: 207–214. doi: 10.1038/nmeth101917327847
-
(2007)
Nat Methods
, vol.4
, pp. 207-214
-
-
Elias, J.E.1
Gygi, S.P.2
-
63
-
-
80051817160
-
MassChroQ: a versatile tool for mass spectrometry quantification
-
21751374, .;:–
-
Valot B, Langella O, Nano E, Zivy M, MassChroQ: a versatile tool for mass spectrometry quantification. Proteomics. 2011;11: 3572–3577. doi: 10.1002/pmic.20110012021751374
-
(2011)
Proteomics
, vol.11
, pp. 3572-3577
-
-
Valot, B.1
Langella, O.2
Nano, E.3
Zivy, M.4
-
64
-
-
33746045692
-
Saccharomyces cerevisiae-based molecular tool kit for manipulation of genes from gram-negative bacteria
-
16820502, .;:–
-
Shanks RMQ, Caiazza NC, Hinsa SM, Toutain CM, O’Toole GA, Saccharomyces cerevisiae-based molecular tool kit for manipulation of genes from gram-negative bacteria. Appl Environ Microbiol. 2006;72: 5027–5036. doi: 10.1128/AEM.00682-0616820502
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 5027-5036
-
-
Shanks, R.M.Q.1
Caiazza, N.C.2
Hinsa, S.M.3
Toutain, C.M.4
O’Toole, G.A.5
-
65
-
-
33749531431
-
mini-Tn7 insertion in bacteria with single attTn7 sites: example Pseudomonas aeruginosa
-
17406227, .;:–
-
Choi K-H, Schweizer HP, mini-Tn7 insertion in bacteria with single attTn7 sites: example Pseudomonas aeruginosa. Nat Protoc. 2006;1: 153–161. doi: 10.1038/nprot.2006.2417406227
-
(2006)
Nat Protoc
, vol.1
, pp. 153-161
-
-
Choi, K.-H.1
Schweizer, H.P.2
-
66
-
-
33747609552
-
Oropharyngeal aspiration of a silica suspension produces a superior model of silicosis in the mouse when compared to intratracheal instillation
-
16908446, ..;:–
-
Lakatos HF, Burgess HA, Thatcher TH, Redonnet MR, Hernady E, Williams JP, et al. Oropharyngeal aspiration of a silica suspension produces a superior model of silicosis in the mouse when compared to intratracheal instillation. Exp Lung Res. 2006;32: 181–199. doi: 10.1080/0190214060081746516908446
-
(2006)
Exp Lung Res
, vol.32
, pp. 181-199
-
-
Lakatos, H.F.1
Burgess, H.A.2
Thatcher, T.H.3
Redonnet, M.R.4
Hernady, E.5
Williams, J.P.6
|