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Volumn 9, Issue 2, 2012, Pages 129-134

High-pH reversed-phase chromatography with fraction concatenation for 2D proteomic analysis

Author keywords

2D chromatographic separation; fraction concatenation; high pH RP; SCX; shotgun proteomics analysis

Indexed keywords

PHOSPHOPEPTIDE; PROTEOME; TRYPSIN;

EID: 84859385670     PISSN: 14789450     EISSN: 17448387     Source Type: Journal    
DOI: 10.1586/epr.12.15     Document Type: Review
Times cited : (240)

References (33)
  • 1
    • 76149146038 scopus 로고    scopus 로고
    • Comparison of extensive protein fractionation and repetitive LC-MS/MS analyses on depth of analysis for complex proteomes
    • Wang H, Chang-Wong T, Tang HY, Speicher DW. Comparison of extensive protein fractionation and repetitive LC-MS/MS analyses on depth of analysis for complex proteomes. J. Proteome Res. 9(2), 1032-1040 (2009).
    • (2009) J. Proteome Res. , vol.9 , Issue.2 , pp. 1032-1040
    • Wang, H.1    Chang-Wong, T.2    Tang, H.Y.3    Speicher, D.W.4
  • 2
    • 77950669475 scopus 로고    scopus 로고
    • Quantitative analysis of proteome coverage and recovery rates for upstream fractionation methods in proteomics
    • Fang Y, Robinson DP, Foster LJ. Quantitative analysis of proteome coverage and recovery rates for upstream fractionation methods in proteomics. J. Proteome Res. 9(4), 1902-1912 (2010).
    • (2010) J. Proteome Res. , vol.9 , Issue.4 , pp. 1902-1912
    • Fang, Y.1    Robinson, D.P.2    Foster, L.J.3
  • 4
    • 0035106351 scopus 로고    scopus 로고
    • Large-scale analysis of the yeast proteome by multidimensional protein identification technology
    • Washburn MP, Wolters D, Yates JR. Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat. Biotech. 19(3), 242-247 (2001).
    • (2001) Nat. Biotech. , vol.19 , Issue.3 , pp. 242-247
    • Washburn, M.P.1    Wolters, D.2    Yates, J.R.3
  • 6
    • 61349198837 scopus 로고    scopus 로고
    • Evaluation of strong cation exchange versus isoelectric focusing of peptides for multidimensional liquid chromatography-tandem mass spectrometry
    • Slebos RJC, Brock JWC, Winters NF et al. Evaluation of strong cation exchange versus isoelectric focusing of peptides for multidimensional liquid chromatography-tandem mass spectrometry. J. Proteome Res. 7(12), 5286-5294 (2008).
    • (2008) J. Proteome Res. , vol.7 , Issue.12 , pp. 5286-5294
    • Slebos, R.J.C.1    Brock, J.W.C.2    Winters, N.F.3
  • 7
    • 0037999986 scopus 로고    scopus 로고
    • Capillary isoelectric focusing-based multidimensional concentration/separation platform for proteome analysis
    • Chen J, Balgley BM, DeVoe DL, Lee CS. Capillary isoelectric focusing-based multidimensional concentration/separation platform for proteome analysis. Anal. Chem. 75(13), 3145-3152 (2003).
    • (2003) Anal. Chem. , vol.75 , Issue.13 , pp. 3145-3152
    • Chen, J.1    Balgley, B.M.2    DeVoe, D.L.3    Lee, C.S.4
  • 8
    • 33748320788 scopus 로고    scopus 로고
    • Optimized peptide separation and identification for mass spectrometry based proteomics via free-flow electrophoresis
    • Malmström J, Lee H, Nesvizhskii AI et al. Optimized peptide separation and identification for mass spectrometry based proteomics via free-flow electrophoresis. J. Proteome Res. 5(9), 2241-2249 (2006).
    • (2006) J. Proteome Res. , vol.5 , Issue.9 , pp. 2241-2249
    • Malmström, J.1    Lee, H.2    Nesvizhskii, A.I.3
  • 9
    • 34249052872 scopus 로고    scopus 로고
    • Anion and cation mixed-bed ion exchange for enhanced multidimensional separations of peptides and phosphopeptides
    • Motoyama A, Xu T, Ruse CI, Wohlschlegel JA, Yates JR. Anion and cation mixed-bed ion exchange for enhanced multidimensional separations of peptides and phosphopeptides. Anal. Chem. 79(10), 3623-3634 (2007).
    • (2007) Anal. Chem. , vol.79 , Issue.10 , pp. 3623-3634
    • Motoyama, A.1    Xu, T.2    Ruse, C.I.3    Wohlschlegel, J.A.4    Yates, J.R.5
  • 10
    • 36348936820 scopus 로고    scopus 로고
    • Two-dimensional reversed-phase 10 ion-pair reversed-phase HPLC: An alternative approach to high-resolution peptide separation for shotgun proteome analysis
    • Delmotte N, Lasaosa M, Tholey A, Heinzle E, Huber CG. Two-dimensional reversed-phase 10 ion-pair reversed-phase HPLC: an alternative approach to high-resolution peptide separation for shotgun proteome analysis. J. Proteome Res. 6(11), 4363-4373 (2007).
    • (2007) J. Proteome Res. , vol.6 , Issue.11 , pp. 4363-4373
    • Delmotte, N.1    Lasaosa, M.2    Tholey, A.3    Heinzle, E.4    Huber, C.G.5
  • 11
    • 44449172641 scopus 로고    scopus 로고
    • Evaluation of comprehensive multidimensional separations using reversed-phase, reversed-phase liquid chromatography/mass spectrometry for shotgun proteomics
    • Nakamura T, Kuromitsu J, Oda Y. Evaluation of comprehensive multidimensional separations using reversed-phase, reversed-phase liquid chromatography/mass spectrometry for shotgun proteomics. J. Proteome Res. 7(3), 1007-1011 (2008).
    • (2008) J. Proteome Res. , vol.7 , Issue.3 , pp. 1007-1011
    • Nakamura, T.1    Kuromitsu, J.2    Oda, Y.3
  • 12
    • 4444275799 scopus 로고    scopus 로고
    • Human serum proteins preseparated by electrophoresis or chromatography followed by tandem mass spectrometry
    • Marshall J, Jankowski A, Furesz S et al. Human serum proteins preseparated by electrophoresis or chromatography followed by tandem mass spectrometry. J. Proteome Res. 3(3), 364-382 (2004).
    • (2004) J. Proteome Res. , vol.3 , Issue.3 , pp. 364-382
    • Marshall, J.1    Jankowski, A.2    Furesz, S.3
  • 13
    • 54749158155 scopus 로고    scopus 로고
    • Multidimensional LC separations in shotgun proteomics
    • Motoyama A, Yates JR. Multidimensional LC separations in shotgun proteomics. Anal. Chem. 80(19), 7187-7193 (2008).
    • (2008) Anal. Chem. , vol.80 , Issue.19 , pp. 7187-7193
    • Motoyama, A.1    Yates, J.R.2
  • 14
    • 77950669475 scopus 로고    scopus 로고
    • Quantitative analysis of proteome coverage and recovery rates for upstream fractionation methods in proteomics
    • Fang Y, Robinson DP, Foster LJ. Quantitative analysis of proteome coverage and recovery rates for upstream fractionation methods in proteomics. J. Proteome Res. 9(4), 1902-1912 (2010).
    • (2010) J. Proteome Res. , vol.9 , Issue.4 , pp. 1902-1912
    • Fang, Y.1    Robinson, D.P.2    Foster, L.J.3
  • 15
    • 26444539668 scopus 로고    scopus 로고
    • Orthogonality of separation in two-dimensional liquid chromatography
    • Comparison of different orthogonal liquid chromatography approaches
    • Gilar M, Olivova P, Daly AE, Gebler JC. Orthogonality of separation in two-dimensional liquid chromatography. Anal. Chem. 77(19), 6426-6434 (2005). Comparison of different orthogonal liquid chromatography approaches.
    • (2005) Anal. Chem. , vol.77 , Issue.19 , pp. 6426-6434
    • Gilar, M.1    Olivova, P.2    Daly, A.E.3    Gebler, J.C.4
  • 17
    • 0037277179 scopus 로고    scopus 로고
    • Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis. The yeast proteome
    • Peng J, Elias JE, Thoreen CC, Licklider LJ, Gygi SP. Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis. The yeast proteome. J. Proteome Res. 2(1), 43-50 (2002).
    • (2002) J. Proteome Res. , vol.2 , Issue.1 , pp. 43-50
    • Peng, J.1    Elias, J.E.2    Thoreen, C.C.3    Licklider, L.J.4    Gygi, S.P.5
  • 18
    • 33645774852 scopus 로고    scopus 로고
    • Modular stop and go extraction tips with stacked disks for parallel and multidimensional peptide fractionation in proteomics
    • Ishihama Y, Rappsilber J, Mann M. Modular stop and go extraction tips with stacked disks for parallel and multidimensional peptide fractionation in proteomics. J. Proteome Res. 5(4), 988-994 (2006).
    • (2006) J. Proteome Res. , vol.5 , Issue.4 , pp. 988-994
    • Ishihama, Y.1    Rappsilber, J.2    Mann, M.3
  • 19
    • 30344451098 scopus 로고    scopus 로고
    • Two-dimensional separation of peptides using RP-RP-HPLC system with different pH in first and second separation dimensions
    • Compares high-pH reversed-phase chromatography with strong cation exchange for first-dimensional separation
    • Gilar M, Olivova P, Daly AE, Gebler JC. Two-dimensional separation of peptides using RP-RP-HPLC system with different pH in first and second separation dimensions. J. Separation Sci. 28(14), 1694-1703 (2005). Compares high-pH reversed-phase chromatography with strong cation exchange for first-dimensional separation.
    • (2005) J. Separation Sci. , vol.28 , Issue.14 , pp. 1694-1703
    • Gilar, M.1    Olivova, P.2    Daly, A.E.3    Gebler, J.C.4
  • 21
    • 20444454237 scopus 로고    scopus 로고
    • Separation, detection, and identification of peptides by ion-pair reversed-phase high-performance liquid chromatography-electrospray ionization mass spectrometry at high and low pH
    • Toll H, Oberacher H, Swart R, Huber CG. Separation, detection, and identification of peptides by ion-pair reversed-phase high-performance liquid chromatography-electrospray ionization mass spectrometry at high and low pH. J. Chromatogr. A 1079(1-2), 274-286 (2005).
    • (2005) J. Chromatogr. A , vol.1079 , Issue.1-2 , pp. 274-286
    • Toll, H.1    Oberacher, H.2    Swart, R.3    Huber, C.G.4
  • 22
    • 51949083217 scopus 로고    scopus 로고
    • Practical implementation of 2D HPLC scheme with accurate peptide retention prediction in both dimensions for high-throughput bottom-up proteomics
    • Shows that concatenation of high-pH reversed-phase fractions can reduce analysis time
    • Dwivedi RC, Spicer V, Harder M et al. Practical implementation of 2D HPLC scheme with accurate peptide retention prediction in both dimensions for high-throughput bottom-up proteomics. Anal. Chem. 80(18), 7036-7042 (2008). Shows that concatenation of high-pH reversed-phase fractions can reduce analysis time.
    • (2008) Anal. Chem. , vol.80 , Issue.18 , pp. 7036-7042
    • Dwivedi, R.C.1    Spicer, V.2    Harder, M.3
  • 23
    • 76149101960 scopus 로고    scopus 로고
    • Assessment of the reproducibility of random hexapeptide peptide library-based protein normalization
    • Dwivedi RC, Krokhin OV, Cortens JP, Wilkins JA. Assessment of the reproducibility of random hexapeptide peptide library-based protein normalization. J. Proteome Res. 9(2), 1144-1149 (2010).
    • (2010) J. Proteome Res. , vol.9 , Issue.2 , pp. 1144-1149
    • Dwivedi, R.C.1    Krokhin, O.V.2    Cortens, J.P.3    Wilkins, J.A.4
  • 25
    • 77957192535 scopus 로고    scopus 로고
    • Quantitative proteomic analyses of influenza virus-infected cultured human lung cells
    • Coombs KM, Berard A, Xu W et al. Quantitative proteomic analyses of influenza virus-infected cultured human lung cells. J. Virol. 84(20), 10888-10906 (2010).
    • (2010) J. Virol. , vol.84 , Issue.20 , pp. 10888-10906
    • Coombs, K.M.1    Berard, A.2    Xu, W.3
  • 26
    • 79954497043 scopus 로고    scopus 로고
    • Combinatorial use of offline SCX and online RP-RP liquid chromatography for iTRAQ-based quantitative proteomics applications
    • Lau E, Lam MP, Siu SO et al. Combinatorial use of offline SCX and online RP-RP liquid chromatography for iTRAQ-based quantitative proteomics applications. Mol. Biosyst. 7(5), 1399-1408 (2011).
    • (2011) Mol. Biosyst. , vol.7 , Issue.5 , pp. 1399-1408
    • Lau, E.1    Lam, M.P.2    Siu, S.O.3
  • 28
    • 67649682186 scopus 로고    scopus 로고
    • Tryptic digest analysis by comprehensive reversed phasextwo reversed phase liquid chromatography (RP-LCx2RP-LC) at different pH's
    • Francois I, Cabooter D, Sandra K, Lynen F, Desmet G, Sandra P. Tryptic digest analysis by comprehensive reversed phasextwo reversed phase liquid chromatography (RP-LCx2RP-LC) at different pH's. J. Sep. Sci. 32(8), 1137-1144 (2009).
    • (2009) J. Sep. Sci. , vol.32 , Issue.8 , pp. 1137-1144
    • Francois, I.1    Cabooter, D.2    Sandra, K.3    Lynen, F.4    Desmet, G.5    Sandra, P.6
  • 29
    • 79955752894 scopus 로고    scopus 로고
    • Reversed-phase chromatography with multiple fraction concatenation strategy for proteome profiling of human MCF10A cells
    • Compares low- and high-pH reversed-phase chromatography with fraction concatenation and strong cation exchange for first-dimensional separation
    • Wang Y, Yang F, Gritsenko MA et al. Reversed-phase chromatography with multiple fraction concatenation strategy for proteome profiling of human MCF10A cells. Proteomics 11(10), 2019-2026 (2011). Compares low- and high-pH reversed-phase chromatography with fraction concatenation and strong cation exchange for first-dimensional separation.
    • (2011) Proteomics , vol.11 , Issue.10 , pp. 2019-2026
    • Wang, Y.1    Yang, F.2    Gritsenko, M.A.3
  • 30
    • 75749099733 scopus 로고    scopus 로고
    • Reversed-phase-reversed-phase liquid chromatography approach with high orthogonality for multidimensional separation of phosphopeptides
    • Song C, Ye M, Han G et al. Reversed-phase-reversed-phase liquid chromatography approach with high orthogonality for multidimensional separation of phosphopeptides. Anal. Chem. 82(1), 53-56 (2009).
    • (2009) Anal. Chem. , vol.82 , Issue.1 , pp. 53-56
    • Song, C.1    Ye, M.2    Han, G.3
  • 31
    • 41149149704 scopus 로고    scopus 로고
    • Large scale depletion of the high-abundance proteins and analysis of middle- and low-abundance proteins in human liver proteome by multidimensional liquid chromatography
    • Gao M, Deng C, Yu W, Zhang Y, Yang P, Zhang X. Large scale depletion of the high-abundance proteins and analysis of middle- and low-abundance proteins in human liver proteome by multidimensional liquid chromatography. Proteomics 8(5), 939-947 (2008).
    • (2008) Proteomics , vol.8 , Issue.5 , pp. 939-947
    • Gao, M.1    Deng, C.2    Yu, W.3    Zhang, Y.4    Yang, P.5    Zhang, X.6
  • 33
    • 59049086847 scopus 로고    scopus 로고
    • Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry
    • Swaney DL, Wenger CD, Thomson JA, Coon JJ. Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry. Proc. Natl Acad. Sci. USA 106(4), 995-1000 (2009).
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , Issue.4 , pp. 995-1000
    • Swaney, D.L.1    Wenger, C.D.2    Thomson, J.A.3    Coon, J.J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.