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Volumn 180, Issue 2, 2008, Pages 1009-1021

Natural genetic variation of Arabidopsis thaliana is geographically structured in the Iberian Peninsula

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; ARTICLE; GENE CLUSTER; GENE LOCUS; GENETIC VARIABILITY; GEOGRAPHIC DISTRIBUTION; PLANT GENETICS; POPULATION DIFFERENTIATION; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM; EUROPE; GENETICS; GEOGRAPHY; PLANT GENOME; POPULATION GENETICS;

EID: 58149359446     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.108.089581     Document Type: Article
Times cited : (105)

References (52)
  • 1
    • 0002751020 scopus 로고
    • The genetics of inbreeding species
    • ALLARD, R., S. JAIN and P. WORKMAN, 1968 The genetics of inbreeding species. Adv. Genet. 14: 55-131.
    • (1968) Adv. Genet , vol.14 , pp. 55-131
    • ALLARD, R.1    JAIN, S.2    WORKMAN, P.3
  • 2
    • 33645501337 scopus 로고    scopus 로고
    • Distribution of genetic variation within and among local populations of Arabidopsis thaliana over its species range
    • BAKKER, E. G., E. A. STAHL, C. TOOMAJIAN, M. NORDBORG, M. KREITMAN et al., 2006 Distribution of genetic variation within and among local populations of Arabidopsis thaliana over its species range. Mol. Ecol. 15: 1405-1418.
    • (2006) Mol. Ecol , vol.15 , pp. 1405-1418
    • BAKKER, E.G.1    STAHL, E.A.2    TOOMAJIAN, C.3    NORDBORG, M.4    KREITMAN, M.5
  • 3
    • 0032900678 scopus 로고    scopus 로고
    • Median-joining network for inferring intraspecific phylogenies
    • BANDELT, H. J., P. FOSTER and A. Röhl, 1999 Median-joining network for inferring intraspecific phylogenies. Mol. Biol. Evol. 16: 37-48.
    • (1999) Mol. Biol. Evol , vol.16 , pp. 37-48
    • BANDELT, H.J.1    FOSTER, P.2    Röhl, A.3
  • 4
    • 38349166654 scopus 로고    scopus 로고
    • Native range genetic variation in Arabidopsis thaliana is strongly geographically structured and reflects Pleistocene glacial dynamics
    • BECK, J. B., H. SCHMUTHS and B. A. SCHAAL, 2008 Native range genetic variation in Arabidopsis thaliana is strongly geographically structured and reflects Pleistocene glacial dynamics. Mol. Ecol. 17: 902-915.
    • (2008) Mol. Ecol , vol.17 , pp. 902-915
    • BECK, J.B.1    SCHMUTHS, H.2    SCHAAL, B.A.3
  • 5
    • 0028055069 scopus 로고
    • Assignment of 30 microsatellite loci to the linkage map of Arabidopsis
    • BELL, C. J., and J. R. ECKER, 1994 Assignment of 30 microsatellite loci to the linkage map of Arabidopsis. Genomics 19: 137-144.
    • (1994) Genomics , vol.19 , pp. 137-144
    • BELL, C.J.1    ECKER, J.R.2
  • 6
    • 0031961197 scopus 로고    scopus 로고
    • Genetic variation within and among populations of Arabidopsis thaliana
    • BERGELSON, J., E. STAHL, S. DUDEK and M. KREITMAN, 1998 Genetic variation within and among populations of Arabidopsis thaliana. Genetics 148: 1311-1323.
    • (1998) Genetics , vol.148 , pp. 1311-1323
    • BERGELSON, J.1    STAHL, E.2    DUDEK, S.3    KREITMAN, M.4
  • 7
    • 0001741062 scopus 로고
    • Genetics of acting-related sequences in tomato
    • BERNARTZKY, R., and S. TANKSLEY, 1986 Genetics of acting-related sequences in tomato. Theor. Appl. Genet. 72: 314-324.
    • (1986) Theor. Appl. Genet , vol.72 , pp. 314-324
    • BERNARTZKY, R.1    TANKSLEY, S.2
  • 8
    • 0037687926 scopus 로고    scopus 로고
    • The utility of single nucleotide polymorphisms in inferences of population history
    • BRUMFIELD, R. T., P. BEERLI, D. A. NICKERSON and S. V. EDWARDS, 2003 The utility of single nucleotide polymorphisms in inferences of population history. Trends Ecol. Evol. 18: 249-256.
    • (2003) Trends Ecol. Evol , vol.18 , pp. 249-256
    • BRUMFIELD, R.T.1    BEERLI, P.2    NICKERSON, D.A.3    EDWARDS, S.V.4
  • 9
    • 0037442092 scopus 로고    scopus 로고
    • Population stratification and spurious allelic association
    • CARDON, L. R., and L. J. PALMER, 2003 Population stratification and spurious allelic association. Lancet 361: 598-604.
    • (2003) Lancet , vol.361 , pp. 598-604
    • CARDON, L.R.1    PALMER, L.J.2
  • 10
    • 33751330712 scopus 로고    scopus 로고
    • Mitigating scoring errors in microsatellite data from wild populations
    • DEWOODY, J., J. NASON and V. HIPKINS, 2006 Mitigating scoring errors in microsatellite data from wild populations. Mol. Ecol. Notes 6: 951-957.
    • (2006) Mol. Ecol. Notes , vol.6 , pp. 951-957
    • DEWOODY, J.1    NASON, J.2    HIPKINS, V.3
  • 11
    • 33747446547 scopus 로고    scopus 로고
    • AFLPDAT: A collection of r functions for convenient handling of AFLP data
    • EHRICH, D., 2006 AFLPDAT: a collection of r functions for convenient handling of AFLP data. Mol. Ecol. Notes 6: 603-604.
    • (2006) Mol. Ecol. Notes , vol.6 , pp. 603-604
    • EHRICH, D.1
  • 12
    • 0036718239 scopus 로고    scopus 로고
    • Homoplasy and mutation model at microsatellite loci and their consequences for population genetics analysis
    • ESTOUP, A., P. JARNE and J. M. CORNUET, 2002 Homoplasy and mutation model at microsatellite loci and their consequences for population genetics analysis. Mol. Ecol. 11: 1591-1604.
    • (2002) Mol. Ecol , vol.11 , pp. 1591-1604
    • ESTOUP, A.1    JARNE, P.2    CORNUET, J.M.3
  • 13
    • 0026681074 scopus 로고
    • Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data
    • EXCOFFIER, L., P. SMOUSE and J. QUATTRO, 1992 Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131: 479-491.
    • (1992) Genetics , vol.131 , pp. 479-491
    • EXCOFFIER, L.1    SMOUSE, P.2    QUATTRO, J.3
  • 14
    • 61849098759 scopus 로고    scopus 로고
    • EXCOFFIER, L, G. LAVAL and S. SCHENEIDER, 2005 Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evol. Bioinform. Online 1: 47-50
    • EXCOFFIER, L., G. LAVAL and S. SCHENEIDER, 2005 Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evol. Bioinform. Online 1: 47-50.
  • 15
    • 0041817568 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies
    • FALUSH, D., M. STEPHENS and J. K. PRITCHARD, 2003 Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164: 1567-1587.
    • (2003) Genetics , vol.164 , pp. 1567-1587
    • FALUSH, D.1    STEPHENS, M.2    PRITCHARD, J.K.3
  • 16
    • 33750472670 scopus 로고    scopus 로고
    • Bayesian clustering using hidden Markov random fields in spatial population genetics
    • FRANÇOIS, O., S. ANCELET and G. GUILLOT, 2006 Bayesian clustering using hidden Markov random fields in spatial population genetics. Genetics 174: 805-816.
    • (2006) Genetics , vol.174 , pp. 805-816
    • FRANÇOIS, O.1    ANCELET, S.2    GUILLOT, G.3
  • 17
    • 84920104312 scopus 로고    scopus 로고
    • Refugia within refugia: Patterns of phylogeographic concordance in the Iberian Peninsula
    • edited by S. WEISS and N. FERRAND. Springer, Dordrecht, The Netherlands
    • GOMEZ, A., and D. LUNT, 2006 Refugia within refugia: patterns of phylogeographic concordance in the Iberian Peninsula, pp. 155-188 in Phylogeography of Southern European Refugia, edited by S. WEISS and N. FERRAND. Springer, Dordrecht, The Netherlands.
    • (2006) Phylogeography of Southern European Refugia , pp. 155-188
    • GOMEZ, A.1    LUNT, D.2
  • 18
    • 85007320774 scopus 로고
    • FSTAT: A computer program to calculate F-statistics
    • GOUDET, J., 1995 FSTAT: a computer program to calculate F-statistics. J. Hered. 86: 485-486.
    • (1995) J. Hered , vol.86 , pp. 485-486
    • GOUDET, J.1
  • 19
    • 34748837256 scopus 로고    scopus 로고
    • Genetic diversity of the natural populations of Arabidopsis thaliana in China
    • HE, F., D. KANG, Y. REN, L. J. QU, Y. ZHEN et al., 2007 Genetic diversity of the natural populations of Arabidopsis thaliana in China. Heredity 99: 423-431.
    • (2007) Heredity , vol.99 , pp. 423-431
    • HE, F.1    KANG, D.2    REN, Y.3    QU, L.J.4    ZHEN, Y.5
  • 20
    • 0035047175 scopus 로고    scopus 로고
    • Speciation, hybrid zones and phylogeography - or seeing genes in space and time
    • HEWITT, G. M., 2001 Speciation, hybrid zones and phylogeography - or seeing genes in space and time. Mol. Ecol. 10: 537-549.
    • (2001) Mol. Ecol , vol.10 , pp. 537-549
    • HEWITT, G.M.1
  • 21
    • 0036175529 scopus 로고    scopus 로고
    • Biogeography of Arabidopsis thaliana (L.) Heynh. (Brassicaceae)
    • HOFFMANN, M. H., 2002 Biogeography of Arabidopsis thaliana (L.) Heynh. (Brassicaceae). J. Biogeogr. 29: 125-134.
    • (2002) J. Biogeogr , vol.29 , pp. 125-134
    • HOFFMANN, M.H.1
  • 22
    • 34547861256 scopus 로고    scopus 로고
    • CLUMPP: A cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure
    • JAKOBSSON, M., and N. A. ROSENBERG, 2007 CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics 23: 1801-1806.
    • (2007) Bioinformatics , vol.23 , pp. 1801-1806
    • JAKOBSSON, M.1    ROSENBERG, N.A.2
  • 24
    • 7244223509 scopus 로고    scopus 로고
    • Neutral genetic variation among wild North American populations of the weedy plant Arabidopsis thaliana is not geographically structured
    • JøRGENSEN, S., and R. MAURICIO, 2004 Neutral genetic variation among wild North American populations of the weedy plant Arabidopsis thaliana is not geographically structured. Mol. Ecol. 13: 3403-3413.
    • (2004) Mol. Ecol , vol.13 , pp. 3403-3413
    • JøRGENSEN, S.1    MAURICIO, R.2
  • 25
    • 14844358868 scopus 로고    scopus 로고
    • HP-Rare: A computer program for performing rarefaction on measures of allelic diversity
    • KALINOWSKI, S., 2005 HP-Rare: a computer program for performing rarefaction on measures of allelic diversity. Mol. Ecol. Notes 5: 187-189.
    • (2005) Mol. Ecol. Notes , vol.5 , pp. 187-189
    • KALINOWSKI, S.1
  • 26
    • 0036854309 scopus 로고    scopus 로고
    • Parallel patterns of sequence variation within and between populations at three loci of Arabidopsis thaliana
    • KUITTINEN, H., D. SALGUERO and M. AGUADÉ , 2002 Parallel patterns of sequence variation within and between populations at three loci of Arabidopsis thaliana. Mol. Biol. Evol. 19: 2030-2034.
    • (2002) Mol. Biol. Evol , vol.19 , pp. 2030-2034
    • KUITTINEN, H.1    SALGUERO, D.2    AGUADÉ, M.3
  • 27
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
    • KUMAR, S., K. TAMURA and M. NEI, 2004 MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinformatics 5: 150-163.
    • (2004) Brief. Bioinformatics , vol.5 , pp. 150-163
    • KUMAR, S.1    TAMURA, K.2    NEI, M.3
  • 28
    • 33646204702 scopus 로고    scopus 로고
    • Variation at two flowering time genes within and among populations of Arabidopsis thaliana: Comparison with markers and traits
    • LE CORRE, V., 2005 Variation at two flowering time genes within and among populations of Arabidopsis thaliana: comparison with markers and traits. Mol. Ecol. 14: 4181-4192.
    • (2005) Mol. Ecol , vol.14 , pp. 4181-4192
    • LE CORRE, V.1
  • 29
    • 0036950802 scopus 로고    scopus 로고
    • Bay-0 x Shahdara recombinant inbred line population: A powerful tool for the genetic dissection of complex traits in Arabidopsis
    • LOUDET, O., S. CHAILLOU, C. CAMILLERI, D. BOUCHEZ and F. DANIEL-VEDELE, 2002 Bay-0 x Shahdara recombinant inbred line population: a powerful tool for the genetic dissection of complex traits in Arabidopsis. Theor. Appl. Genet. 104: 1173-1184.
    • (2002) Theor. Appl. Genet , vol.104 , pp. 1173-1184
    • LOUDET, O.1    CHAILLOU, S.2    CAMILLERI, C.3    BOUCHEZ, D.4    DANIEL-VEDELE, F.5
  • 30
    • 0014054519 scopus 로고
    • The detection of disease clustering and a generalized regression approach
    • MANTEL, N., 1967 The detection of disease clustering and a generalized regression approach. Cancer Res. 27: 209-220.
    • (1967) Cancer Res , vol.27 , pp. 209-220
    • MANTEL, N.1
  • 31
    • 33745562481 scopus 로고    scopus 로고
    • Genetic mechanisms and evolutionary significance of natural variation in Arabidopsis
    • MITCHELL-OLDS, T., and J. SCHMITT, 2006 Genetic mechanisms and evolutionary significance of natural variation in Arabidopsis. Nature 441: 947-952.
    • (2006) Nature , vol.441 , pp. 947-952
    • MITCHELL-OLDS, T.1    SCHMITT, J.2
  • 34
    • 33645894460 scopus 로고    scopus 로고
    • Evidence for a large-scale population structure among accessions of Arabidopsis thaliana: Possible causes and consequences for the distribution of linkage disequilibrium
    • OSTROWSKI, M. F., J. DAVID, S. SANTONI, H. MCKHANN, X. REBOUD et al., 2006 Evidence for a large-scale population structure among accessions of Arabidopsis thaliana: possible causes and consequences for the distribution of linkage disequilibrium. Mol. Ecol. 15: 1507-1517.
    • (2006) Mol. Ecol , vol.15 , pp. 1507-1517
    • OSTROWSKI, M.F.1    DAVID, J.2    SANTONI, S.3    MCKHANN, H.4    REBOUD, X.5
  • 36
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • PRITCHARD, J. K., M. STEPHENS and P. DONNELLY, 2000 Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
    • (2000) Genetics , vol.155 , pp. 945-959
    • PRITCHARD, J.K.1    STEPHENS, M.2    DONNELLY, P.3
  • 37
    • 0034525723 scopus 로고    scopus 로고
    • Novel chloroplast microsatellites reveal cytoplasmic variation in Arabidopsis thaliana
    • PROVAN, J., 2000 Novel chloroplast microsatellites reveal cytoplasmic variation in Arabidopsis thaliana. Mol. Ecol. 9: 2183-2185.
    • (2000) Mol. Ecol , vol.9 , pp. 2183-2185
    • PROVAN, J.1
  • 38
    • 0003057608 scopus 로고
    • The LAIBACH standard collection of natural races
    • ROBBELEN, G., 1965 The LAIBACH standard collection of natural races. Arabidopsis Inf. Ser. 2: 36-47.
    • (1965) Arabidopsis Inf. Ser , vol.2 , pp. 36-47
    • ROBBELEN, G.1
  • 40
    • 33750437374 scopus 로고    scopus 로고
    • ROSENBERG, N. A., S. MAHAJAN, S. RAMACHANDRAN, C. ZHAO, J. K. PRITCHARD et al., 2005 Clines, clusters, and the effect of study design on the inference of human population structure. PLoS Genet. 1: e70.
    • ROSENBERG, N. A., S. MAHAJAN, S. RAMACHANDRAN, C. ZHAO, J. K. PRITCHARD et al., 2005 Clines, clusters, and the effect of study design on the inference of human population structure. PLoS Genet. 1: e70.
  • 41
    • 33645401766 scopus 로고    scopus 로고
    • Evidence for a large-scale population structure of Arabidopsis thaliana from genome-wide single nucleotide polymorphism markers
    • SCHMID, K. J., O. TORJEK, R. MEYER, H. SCHMUTHS, M. H. HOFFMANN et al., 2006 Evidence for a large-scale population structure of Arabidopsis thaliana from genome-wide single nucleotide polymorphism markers. Theor. Appl. Genet. 112: 1104-1114.
    • (2006) Theor. Appl. Genet , vol.112 , pp. 1104-1114
    • SCHMID, K.J.1    TORJEK, O.2    MEYER, R.3    SCHMUTHS, H.4    HOFFMANN, M.H.5
  • 42
    • 0034522525 scopus 로고    scopus 로고
    • Genetic isolation by distance in Arabidopsis thaliana: Biogeography and postglacial colonization of Europe
    • SHARBEL, T. F., B. HAUBOLD and T. MITCHELL- OLDS, 2000 Genetic isolation by distance in Arabidopsis thaliana: biogeography and postglacial colonization of Europe. Mol. Ecol. 9: 2109-2118.
    • (2000) Mol. Ecol , vol.9 , pp. 2109-2118
    • SHARBEL, T.F.1    HAUBOLD, B.2    MITCHELL- OLDS, T.3
  • 43
    • 0028816747 scopus 로고
    • A measure of population subdivision based on microsatellite allele frequencies
    • SLATKIN, M., 1995 A measure of population subdivision based on microsatellite allele frequencies. Genetics 139: 457-462.
    • (1995) Genetics , vol.139 , pp. 457-462
    • SLATKIN, M.1
  • 44
    • 84963034277 scopus 로고
    • Multiple regression and correlation extensions of the Mantel test of matrix correspondence
    • SMOUSE, P., J. LONG and R. SOKAL, 1986 Multiple regression and correlation extensions of the Mantel test of matrix correspondence. Syst. Zool. 35: 627-632.
    • (1986) Syst. Zool , vol.35 , pp. 627-632
    • SMOUSE, P.1    LONG, J.2    SOKAL, R.3
  • 45
    • 12444261781 scopus 로고    scopus 로고
    • Genetic variability in natural populations of Arabidopsis thaliana in northern
    • STENøIEN, H. K., C. B. FENSTER, A. TONTERI and O. SAVOLAINEN, 2005 Genetic variability in natural populations of Arabidopsis thaliana in northern Europe. Mol. Ecol. 14: 137-148.
    • (2005) Europe. Mol. Ecol , vol.14 , pp. 137-148
    • STENøIEN, H.K.1    FENSTER, C.B.2    TONTERI, A.3    SAVOLAINEN, O.4
  • 46
    • 0346991740 scopus 로고    scopus 로고
    • An analysis of microsatellite loci in Arabidopsis thaliana: Mutational dynamics and application
    • SYMONDS, V. V., and A. M. LLOYD, 2003 An analysis of microsatellite loci in Arabidopsis thaliana: mutational dynamics and application. Genetics 165: 1475-1488.
    • (2003) Genetics , vol.165 , pp. 1475-1488
    • SYMONDS, V.V.1    LLOYD, A.M.2
  • 47
    • 0029023131 scopus 로고
    • Microsatellite polymorphisms in natural populations of Arabidopsis thaliana in Japan
    • TODOKORO, S., R. TERAUCHI and S. KAWANO, 1995 Microsatellite polymorphisms in natural populations of Arabidopsis thaliana in Japan. Jpn. J. Genet. 70: 543-554.
    • (1995) Jpn. J. Genet , vol.70 , pp. 543-554
    • TODOKORO, S.1    TERAUCHI, R.2    KAWANO, S.3
  • 48
    • 0141907759 scopus 로고    scopus 로고
    • Establishment of a high-efficiency SNP-based framework marker set for Arabidopsis
    • TÖRJÉCK, O., D. BERGER, R. C. MEYER, C. MUSSIG, K. J. SCHMID et al., 2003 Establishment of a high-efficiency SNP-based framework marker set for Arabidopsis. Plant J. 36: 122-140.
    • (2003) Plant J , vol.36 , pp. 122-140
    • TÖRJÉCK, O.1    BERGER, D.2    MEYER, R.C.3    MUSSIG, C.4    SCHMID, K.J.5
  • 49
    • 0033033101 scopus 로고    scopus 로고
    • VAN BERLOO, R., 1999 GGT: software for the display of graphical genotypes. J. Hered. 90: 328-329.
    • VAN BERLOO, R., 1999 GGT: software for the display of graphical genotypes. J. Hered. 90: 328-329.
  • 50
    • 0021566877 scopus 로고
    • Estimating F-statistics for the analysis of population structure
    • WEIR, B., and C. COCKERHAM, 1984 Estimating F-statistics for the analysis of population structure. Evolution 38: 1358-1370.
    • (1984) Evolution , vol.38 , pp. 1358-1370
    • WEIR, B.1    COCKERHAM, C.2
  • 51
    • 61849176954 scopus 로고    scopus 로고
    • YEH, F, R. YANG and T. BOYLE, 1999 POPGENE, version 1.32. Microsoft Windows-Based Freeware for Population Genetic Analysis. University of Alberta, Edmonton, Alberta
    • YEH, F., R. YANG and T. BOYLE, 1999 POPGENE, version 1.32. Microsoft Windows-Based Freeware for Population Genetic Analysis. University of Alberta, Edmonton, Alberta.
  • 52
    • 33846466407 scopus 로고    scopus 로고
    • ZHAO, K., M. J. ARANZANA, S. KIM, C. LISTER, C. SHINDO et al., 2007 An Arabidopsis example of association mapping in structured samples. PLoS Genet. 3: e4.
    • ZHAO, K., M. J. ARANZANA, S. KIM, C. LISTER, C. SHINDO et al., 2007 An Arabidopsis example of association mapping in structured samples. PLoS Genet. 3: e4.


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