-
1
-
-
77952717854
-
Design and analysis of synthetic carbon fixation pathways
-
Bar-Even, A., Noor, E., Lewis, N.E., Milo, R., Design and analysis of synthetic carbon fixation pathways. Proc. Natl. Acad. Sci. USA 107 (2010), 8889–8894.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 8889-8894
-
-
Bar-Even, A.1
Noor, E.2
Lewis, N.E.3
Milo, R.4
-
2
-
-
84859369657
-
A survey of carbon fixation pathways through a quantitative lens
-
Bar-Even, A., Noor, E., Milo, R., A survey of carbon fixation pathways through a quantitative lens. J. Exp. Bot. 63 (2012), 2325–2342.
-
(2012)
J. Exp. Bot.
, vol.63
, pp. 2325-2342
-
-
Bar-Even, A.1
Noor, E.2
Milo, R.3
-
3
-
-
70350641005
-
Genome evolution and adaptation in a long-term experiment with Escherichia coli
-
Barrick, J.E., Yu, D.S., Yoon, S.H., Jeong, H., Oh, T.K., Schneider, D., Lenski, R.E., Kim, J.F., Genome evolution and adaptation in a long-term experiment with Escherichia coli. Nature 461 (2009), 1243–1247.
-
(2009)
Nature
, vol.461
, pp. 1243-1247
-
-
Barrick, J.E.1
Yu, D.S.2
Yoon, S.H.3
Jeong, H.4
Oh, T.K.5
Schneider, D.6
Lenski, R.E.7
Kim, J.F.8
-
4
-
-
0001148367
-
The path of carbon in photosynthesis. XXI. The cyclic regeneration of carbon dioxide acceptor1
-
Bassham, J.A., Benson, A.A., Kay, L.D., Harris, A.Z., Wilson, A.T., Calvin, M., The path of carbon in photosynthesis. XXI. The cyclic regeneration of carbon dioxide acceptor1. J. Am. Chem. Soc. 76 (1954), 1760–1770.
-
(1954)
J. Am. Chem. Soc.
, vol.76
, pp. 1760-1770
-
-
Bassham, J.A.1
Benson, A.A.2
Kay, L.D.3
Harris, A.Z.4
Wilson, A.T.5
Calvin, M.6
-
5
-
-
45849093668
-
Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli
-
Blount, Z.D., Borland, C.Z., Lenski, R.E., Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli. Proc. Natl. Acad. Sci. USA 105 (2008), 7899–7906.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 7899-7906
-
-
Blount, Z.D.1
Borland, C.Z.2
Lenski, R.E.3
-
6
-
-
84897059996
-
Realizing the potential of synthetic biology
-
Church, G.M., Elowitz, M.B., Smolke, C.D., Voigt, C.A., Weiss, R., Realizing the potential of synthetic biology. Nat. Rev. Mol. Cell Biol. 15 (2014), 289–294.
-
(2014)
Nat. Rev. Mol. Cell Biol.
, vol.15
, pp. 289-294
-
-
Church, G.M.1
Elowitz, M.B.2
Smolke, C.D.3
Voigt, C.A.4
Weiss, R.5
-
7
-
-
84917686994
-
Identification of mutations in laboratory-evolved microbes from next-generation sequencing data using breseq
-
Deatherage, D.E., Barrick, J.E., Identification of mutations in laboratory-evolved microbes from next-generation sequencing data using breseq. Methods Mol. Biol. 1151 (2014), 165–188.
-
(2014)
Methods Mol. Biol.
, vol.1151
, pp. 165-188
-
-
Deatherage, D.E.1
Barrick, J.E.2
-
8
-
-
33847314378
-
Beneficial mutation selection balance and the effect of linkage on positive selection
-
Desai, M.M., Fisher, D.S., Beneficial mutation selection balance and the effect of linkage on positive selection. Genetics 176 (2007), 1759–1798.
-
(2007)
Genetics
, vol.176
, pp. 1759-1798
-
-
Desai, M.M.1
Fisher, D.S.2
-
9
-
-
84928069254
-
Opposing effects of folding and assembly chaperones on evolvability of Rubisco
-
Durão, P., Aigner, H., Nagy, P., Mueller-Cajar, O., Hartl, F.U., Hayer-Hartl, M., Opposing effects of folding and assembly chaperones on evolvability of Rubisco. Nat. Chem. Biol. 11 (2015), 148–155.
-
(2015)
Nat. Chem. Biol.
, vol.11
, pp. 148-155
-
-
Durão, P.1
Aigner, H.2
Nagy, P.3
Mueller-Cajar, O.4
Hartl, F.U.5
Hayer-Hartl, M.6
-
10
-
-
0034117444
-
Structural basis for the function of Bacillus subtilis phosphoribosyl-pyrophosphate synthetase
-
Eriksen, T.A., Kadziola, A., Bentsen, A.K., Harlow, K.W., Larsen, S., Structural basis for the function of Bacillus subtilis phosphoribosyl-pyrophosphate synthetase. Nat. Struct. Biol. 7 (2000), 303–308.
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 303-308
-
-
Eriksen, T.A.1
Kadziola, A.2
Bentsen, A.K.3
Harlow, K.W.4
Larsen, S.5
-
11
-
-
84916613479
-
Acetogenic mixotrophy: novel options for yield improvement in biofuels and biochemicals production
-
Fast, A.G., Schmidt, E.D., Jones, S.W., Tracy, B.P., Acetogenic mixotrophy: novel options for yield improvement in biofuels and biochemicals production. Curr. Opin. Biotechnol. 33 (2015), 60–72.
-
(2015)
Curr. Opin. Biotechnol.
, vol.33
, pp. 60-72
-
-
Fast, A.G.1
Schmidt, E.D.2
Jones, S.W.3
Tracy, B.P.4
-
12
-
-
84946567350
-
Determinants of spontaneous mutation in the bacterium Escherichia coli as revealed by whole-genome sequencing
-
Foster, P.L., Lee, H., Popodi, E., Townes, J.P., Tang, H., Determinants of spontaneous mutation in the bacterium Escherichia coli as revealed by whole-genome sequencing. Proc. Natl. Acad. Sci. USA 112 (2015), E5990–E5999.
-
(2015)
Proc. Natl. Acad. Sci. USA
, vol.112
, pp. E5990-E5999
-
-
Foster, P.L.1
Lee, H.2
Popodi, E.3
Townes, J.P.4
Tang, H.5
-
13
-
-
80053227684
-
Alternative pathways of carbon dioxide fixation: insights into the early evolution of life?
-
Fuchs, G., Alternative pathways of carbon dioxide fixation: insights into the early evolution of life?. Annu. Rev. Microbiol. 65 (2011), 631–658.
-
(2011)
Annu. Rev. Microbiol.
, vol.65
, pp. 631-658
-
-
Fuchs, G.1
-
14
-
-
84941346066
-
Complete biosynthesis of opioids in yeast
-
Galanie, S., Thodey, K., Trenchard, I.J., Filsinger Interrante, M., Smolke, C.D., Complete biosynthesis of opioids in yeast. Science 349 (2015), 1095–1100.
-
(2015)
Science
, vol.349
, pp. 1095-1100
-
-
Galanie, S.1
Thodey, K.2
Trenchard, I.J.3
Filsinger Interrante, M.4
Smolke, C.D.5
-
15
-
-
85028211141
-
Quantitative analysis of an engineered CO2-fixing Escherichia coli reveals great potential of heterotrophic CO2 fixation
-
Gong, F., Liu, G., Zhai, X., Zhou, J., Cai, Z., Li, Y., Quantitative analysis of an engineered CO2-fixing Escherichia coli reveals great potential of heterotrophic CO2 fixation. Biotechnol. Biofuels, 8, 2015, 86.
-
(2015)
Biotechnol. Biofuels
, vol.8
, pp. 86
-
-
Gong, F.1
Liu, G.2
Zhai, X.3
Zhou, J.4
Cai, Z.5
Li, Y.6
-
16
-
-
85004191348
-
Complete genome sequence of Escherichia coli BW25113
-
e01038-14
-
Grenier, F., Matteau, D., Baby, V., Rodrigue, S., Complete genome sequence of Escherichia coli BW25113. Genome Announc., 2, 2014 e01038-14.
-
(2014)
Genome Announc.
, vol.2
-
-
Grenier, F.1
Matteau, D.2
Baby, V.3
Rodrigue, S.4
-
17
-
-
35348863113
-
Metabolic engineering of a genetic selection system with tunable stringency
-
Kleeb, A.C., Edalat, M.H., Gamper, M., Haugstetter, J., Giger, L., Neuenschwander, M., Kast, P., Hilvert, D., Metabolic engineering of a genetic selection system with tunable stringency. Proc. Natl. Acad. Sci. USA 104 (2007), 13907–13912.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 13907-13912
-
-
Kleeb, A.C.1
Edalat, M.H.2
Gamper, M.3
Haugstetter, J.4
Giger, L.5
Neuenschwander, M.6
Kast, P.7
Hilvert, D.8
-
18
-
-
84859111827
-
Integrated electromicrobial conversion of CO2 to higher alcohols
-
Li, H., Opgenorth, P.H., Wernick, D.G., Rogers, S., Wu, T.-Y., Higashide, W., Malati, P., Huo, Y.-X., Cho, K.M., Liao, J.C., Integrated electromicrobial conversion of CO2 to higher alcohols. Science, 335, 2012, 1596.
-
(2012)
Science
, vol.335
, pp. 1596
-
-
Li, H.1
Opgenorth, P.H.2
Wernick, D.G.3
Rogers, S.4
Wu, T.-Y.5
Higashide, W.6
Malati, P.7
Huo, Y.-X.8
Cho, K.M.9
Liao, J.C.10
-
19
-
-
84908510011
-
A faster Rubisco with potential to increase photosynthesis in crops
-
Lin, M.T., Occhialini, A., Andralojc, P.J., Parry, M.A.J., Hanson, M.R., A faster Rubisco with potential to increase photosynthesis in crops. Nature 513 (2014), 547–550.
-
(2014)
Nature
, vol.513
, pp. 547-550
-
-
Lin, M.T.1
Occhialini, A.2
Andralojc, P.J.3
Parry, M.A.J.4
Hanson, M.R.5
-
20
-
-
79953759834
-
Powering microbes with electricity: direct electron transfer from electrodes to microbes
-
Lovley, D.R., Powering microbes with electricity: direct electron transfer from electrodes to microbes. Environ. Microbiol. Rep. 3 (2011), 27–35.
-
(2011)
Environ. Microbiol. Rep.
, vol.3
, pp. 27-35
-
-
Lovley, D.R.1
-
21
-
-
84931464826
-
Adaptation, clonal interference, and frequency-dependent interactions in a long-term evolution experiment with Escherichia coli
-
Maddamsetti, R., Lenski, R.E., Barrick, J.E., Adaptation, clonal interference, and frequency-dependent interactions in a long-term evolution experiment with Escherichia coli. Genetics 200 (2015), 619–631.
-
(2015)
Genetics
, vol.200
, pp. 619-631
-
-
Maddamsetti, R.1
Lenski, R.E.2
Barrick, J.E.3
-
22
-
-
78649695759
-
Metabolomic analysis and visualization engine for LC-MS data
-
Melamud, E., Vastag, L., Rabinowitz, J.D., Metabolomic analysis and visualization engine for LC-MS data. Anal. Chem. 82 (2010), 9818–9826.
-
(2010)
Anal. Chem.
, vol.82
, pp. 9818-9826
-
-
Melamud, E.1
Vastag, L.2
Rabinowitz, J.D.3
-
23
-
-
50949090470
-
Evolving improved Synechococcus Rubisco functional expression in Escherichia coli
-
Mueller-Cajar, O., Whitney, S.M., Evolving improved Synechococcus Rubisco functional expression in Escherichia coli. Biochem. J. 414 (2008), 205–214.
-
(2008)
Biochem. J.
, vol.414
, pp. 205-214
-
-
Mueller-Cajar, O.1
Whitney, S.M.2
-
24
-
-
84922433192
-
Engineering Escherichia coli for methanol conversion
-
Müller, J.E.N., Meyer, F., Litsanov, B., Kiefer, P., Potthoff, E., Heux, S., Quax, W.J., Wendisch, V.F., Brautaset, T., Portais, J.-C., Vorholt, J.A., Engineering Escherichia coli for methanol conversion. Metab. Eng. 28 (2015), 190–201.
-
(2015)
Metab. Eng.
, vol.28
, pp. 190-201
-
-
Müller, J.E.N.1
Meyer, F.2
Litsanov, B.3
Kiefer, P.4
Potthoff, E.5
Heux, S.6
Quax, W.J.7
Wendisch, V.F.8
Brautaset, T.9
Portais, J.-C.10
Vorholt, J.A.11
-
26
-
-
0037461340
-
The influence of cellular physiology on the initiation of mutational pathways in Escherichia coli populations
-
Notley-McRobb, L., Seeto, S., Ferenci, T., The influence of cellular physiology on the initiation of mutational pathways in Escherichia coli populations. Proc. Biol. Sci. 270 (2003), 843–848.
-
(2003)
Proc. Biol. Sci.
, vol.270
, pp. 843-848
-
-
Notley-McRobb, L.1
Seeto, S.2
Ferenci, T.3
-
27
-
-
0001519096
-
Experiments with the chemostat on spontaneous mutations of bacteria
-
Novick, A., Szilard, L., Experiments with the chemostat on spontaneous mutations of bacteria. Proc. Natl. Acad. Sci. USA 36 (1950), 708–719.
-
(1950)
Proc. Natl. Acad. Sci. USA
, vol.36
, pp. 708-719
-
-
Novick, A.1
Szilard, L.2
-
28
-
-
77749320898
-
What is flux balance analysis?
-
Orth, J.D., Thiele, I., Palsson, B.Ø., What is flux balance analysis?. Nat. Biotechnol. 28 (2010), 245–248.
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 245-248
-
-
Orth, J.D.1
Thiele, I.2
Palsson, B.Ø.3
-
29
-
-
33644980943
-
Directed evolution of RuBisCO hypermorphs through genetic selection in engineered E.coli
-
Parikh, M.R., Greene, D.N., Woods, K.K., Matsumura, I., Directed evolution of RuBisCO hypermorphs through genetic selection in engineered E.coli. Protein Eng. Des. Sel. 19 (2006), 113–119.
-
(2006)
Protein Eng. Des. Sel.
, vol.19
, pp. 113-119
-
-
Parikh, M.R.1
Greene, D.N.2
Woods, K.K.3
Matsumura, I.4
-
30
-
-
84949871122
-
Fine-tuning citrate synthase flux potentiates and refines metabolic innovation in the Lenski evolution experiment
-
pii
-
Quandt, E.M., Gollihar, J., Blount, Z.D., Ellington, A.D., Georgiou, G., Barrick, J.E., Fine-tuning citrate synthase flux potentiates and refines metabolic innovation in the Lenski evolution experiment. eLife, 4, 2015, e09696 pii.
-
(2015)
eLife
, vol.4
, pp. e09696
-
-
Quandt, E.M.1
Gollihar, J.2
Blount, Z.D.3
Ellington, A.D.4
Georgiou, G.5
Barrick, J.E.6
-
31
-
-
77955298900
-
On the stability of metabolic cycles
-
Reznik, E., Segrè, D., On the stability of metabolic cycles. J. Theor. Biol. 266 (2010), 536–549.
-
(2010)
J. Theor. Biol.
, vol.266
, pp. 536-549
-
-
Reznik, E.1
Segrè, D.2
-
32
-
-
0035232377
-
Evolutionary engineering of industrially important microbial phenotypes
-
Sauer, U., Evolutionary engineering of industrially important microbial phenotypes. Adv. Biochem. Eng. Biotechnol. 73 (2001), 129–169.
-
(2001)
Adv. Biochem. Eng. Biotechnol.
, vol.73
, pp. 129-169
-
-
Sauer, U.1
-
34
-
-
84925426233
-
Computational protein design enables a novel one-carbon assimilation pathway
-
Siegel, J.B., Smith, A.L., Poust, S., Wargacki, A.J., Bar-Even, A., Louw, C., Shen, B.W., Eiben, C.B., Tran, H.M., Noor, E., et al. Computational protein design enables a novel one-carbon assimilation pathway. Proc. Natl. Acad. Sci. USA 112 (2015), 3704–3709.
-
(2015)
Proc. Natl. Acad. Sci. USA
, vol.112
, pp. 3704-3709
-
-
Siegel, J.B.1
Smith, A.L.2
Poust, S.3
Wargacki, A.J.4
Bar-Even, A.5
Louw, C.6
Shen, B.W.7
Eiben, C.B.8
Tran, H.M.9
Noor, E.10
-
35
-
-
84924958721
-
Synthetic methylotrophy: engineering the production of biofuels and chemicals based on the biology of aerobic methanol utilization
-
Whitaker, W.B., Sandoval, N.R., Bennett, R.K., Fast, A.G., Papoutsakis, E.T., Synthetic methylotrophy: engineering the production of biofuels and chemicals based on the biology of aerobic methanol utilization. Curr. Opin. Biotechnol. 33 (2015), 165–175.
-
(2015)
Curr. Opin. Biotechnol.
, vol.33
, pp. 165-175
-
-
Whitaker, W.B.1
Sandoval, N.R.2
Bennett, R.K.3
Fast, A.G.4
Papoutsakis, E.T.5
-
36
-
-
84890116570
-
Long-term dynamics of adaptation in asexual populations
-
Wiser, M.J., Ribeck, N., Lenski, R.E., Long-term dynamics of adaptation in asexual populations. Science 342 (2013), 1364–1367.
-
(2013)
Science
, vol.342
, pp. 1364-1367
-
-
Wiser, M.J.1
Ribeck, N.2
Lenski, R.E.3
-
37
-
-
79959374585
-
Metabolic engineering of Escherichia coli for direct production of 1,4-butanediol
-
Yim, H., Haselbeck, R., Niu, W., Pujol-Baxley, C., Burgard, A., Boldt, J., Khandurina, J., Trawick, J.D., Osterhout, R.E., Stephen, R., et al. Metabolic engineering of Escherichia coli for direct production of 1,4-butanediol. Nat. Chem. Biol. 7 (2011), 445–452.
-
(2011)
Nat. Chem. Biol.
, vol.7
, pp. 445-452
-
-
Yim, H.1
Haselbeck, R.2
Niu, W.3
Pujol-Baxley, C.4
Burgard, A.5
Boldt, J.6
Khandurina, J.7
Trawick, J.D.8
Osterhout, R.E.9
Stephen, R.10
-
38
-
-
84877292750
-
Spanning high-dimensional expression space using ribosome-binding site combinatorics
-
Zelcbuch, L., Antonovsky, N., Bar-Even, A., Levin-Karp, A., Barenholz, U., Dayagi, M., Liebermeister, W., Flamholz, A., Noor, E., Amram, S., et al. Spanning high-dimensional expression space using ribosome-binding site combinatorics. Nucleic Acids Res., 41, 2013, e98.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. e98
-
-
Zelcbuch, L.1
Antonovsky, N.2
Bar-Even, A.3
Levin-Karp, A.4
Barenholz, U.5
Dayagi, M.6
Liebermeister, W.7
Flamholz, A.8
Noor, E.9
Amram, S.10
-
39
-
-
84886685546
-
Rubisco-based engineered Escherichia coli for in situ carbon dioxide recycling
-
Zhuang, Z.-Y., Li, S.-Y., Rubisco-based engineered Escherichia coli for in situ carbon dioxide recycling. Bioresour. Technol. 150 (2013), 79–88.
-
(2013)
Bioresour. Technol.
, vol.150
, pp. 79-88
-
-
Zhuang, Z.-Y.1
Li, S.-Y.2
|