-
1
-
-
77649245472
-
Cross-species analysis traces adaptationof Rubisco toward optimality in alow-dimensional landscape
-
Savir, Y., Noor, E., Milo, R., and Tlusty, T. (2010) Cross-species analysis traces adaptationof Rubisco toward optimality in alow-dimensional landscape. Proc. Natl. Acad. Sci. U.S.A. 107, 3475-3480
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 3475-3480
-
-
Savir, Y.1
Noor, E.2
Milo, R.3
Tlusty, T.4
-
2
-
-
33646583168
-
Despite slow catalysis and confused substrate specificity, all ribulose bisphosphate car-boxylases may be nearly perfectly optimized
-
Tcherkez, G. G., Farquhar, G. D., and Andrews, T. J. (2006) Despite slow catalysis and confused substrate specificity, all ribulose bisphosphate car-boxylases may be nearly perfectly optimized. Proc. Natl. Acad. Sci. U.S.A. 103, 7246-7251
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 7246-7251
-
-
Tcherkez, G.G.1
Farquhar, G.D.2
Andrews, T.J.3
-
3
-
-
34249664967
-
Chloroplastic photorespiratory bypass increases photosynthesis and bio-mass production in Arabidopsis thaliana
-
Kebeish, R., Niessen, M., Thiruveedhi, K., Bari, R., Hirsch, H. J., Rosenk-ranz, R., Stäbler, N., Schönfeld, B., Kreuzaler, F., and Peterhänsel, C. (2007) Chloroplastic photorespiratory bypass increases photosynthesis and bio-mass production in Arabidopsis thaliana. Nat. Biotechnol. 25, 593-599
-
(2007)
Nat. Biotechnol.
, vol.25
, pp. 593-599
-
-
Kebeish, R.1
Niessen, M.2
Thiruveedhi, K.3
Bari, R.4
Hirsch, H.J.5
Rosenk-Ranz, R.6
Stäbler, N.7
Schönfeld, B.8
Kreuzaler, F.9
Peterhänsel, C.10
-
4
-
-
0029670395
-
Glc locus of Escherichia coli: Characterization of genes encoding the subunits of glyco-late oxidase and the glc regulator protein
-
Pellicer, M. T., Bad́ia, J., Aguilar, J., and Baldomà, L. (1996) glc locus of Escherichia coli: characterization of genes encoding the subunits of glyco-late oxidase and the glc regulator protein. J. Bacteriol. 178, 2051-2059
-
(1996)
J. Bacteriol.
, vol.178
, pp. 2051-2059
-
-
Pellicer, M.T.1
Bad́ia, J.2
Aguilar, J.3
Baldomà, L.4
-
5
-
-
84868200774
-
Glycolate oxidation in A
-
Maier, A., Fahnenstich, H., von Caemmerer, S., Engqvist, M. K. M., Weber, A. P. M., Flügge, U.-I., and Maurino, V. G. (2012) Glycolate oxidation in A. thaliana chloroplasts improves biomass production. Front. Plant Sci. 3, 38
-
(2012)
Thaliana Chloroplasts Improves Biomass Production. Front. Plant Sci.
, vol.3
, pp. 38
-
-
Maier, A.1
Fahnenstich, H.2
Von Caemmerer, S.3
Engqvist, M.K.M.4
Weber, A.P.M.5
Flügge, U.-I.6
Maurino, V.G.7
-
6
-
-
84857137366
-
Detailing the optimality of photosynthesis in cyanobacteria through systems biology analysis
-
Nogales, J., Gudmundsson, S., Knight, E. M., Palsson, B. O., and Thiele, I. (2012) Detailing the optimality of photosynthesis in cyanobacteria through systems biology analysis. Proc. Natl. Acad. Sci. U.S.A. 109, 2678-2683
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 2678-2683
-
-
Nogales, J.1
Gudmundsson, S.2
Knight, E.M.3
Palsson, B.O.4
Thiele, I.5
-
7
-
-
79956054956
-
Comparing photosynthetic and photovoltaic efficiencies and recognizing the potential for improvement
-
Blankenship, R. E., Tiede, D. M., Barber, J., Brudvig, G. W., Fleming, G., Ghirardi, M., Gunner, M. R., Junge, W., Kramer, D. M., Melis, A., Moore, T. A., Moser, C. C., Nocera, D. G., Nozik, A. J., Ort, D. R., Parson, W. W., Prince, R. C., and Sayre, R. T. (2011) Comparing photosynthetic and photovoltaic efficiencies and recognizing the potential for improvement. Science 332, 805-809
-
(2011)
Science
, vol.332
, pp. 805-809
-
-
Blankenship, R.E.1
Tiede, D.M.2
Barber, J.3
Brudvig, G.W.4
Fleming, G.5
Ghirardi, M.6
Gunner, M.R.7
Junge, W.8
Kramer, D.M.9
Melis, A.10
Moore, T.A.11
Moser, C.C.12
Nocera, D.G.13
Nozik, A.J.14
Ort, D.R.15
Parson, W.W.16
Prince, R.C.17
Sayre, R.T.18
-
8
-
-
80053227684
-
Alternative pathways of carbon dioxide fixation: Insights into the early evolution of life?
-
Fuchs, G. (2011) Alternative pathways of carbon dioxide fixation: Insights into the early evolution of life? Annu. Rev. Microbiol. 65, 631-658
-
(2011)
Annu. Rev. Microbiol.
, vol.65
, pp. 631-658
-
-
Fuchs, G.1
-
10
-
-
84874798401
-
Expression of the sub-pathways of the Chloroflexus aurantiacus 3-hydroxypropionate carbon fixation bicycle in e
-
Mattozzi, M. d., Ziesack, M., Voges, M. J., Silver, P. A., and Way, J. C. (2013) Expression of the sub-pathways of the Chloroflexus aurantiacus 3-hydroxypropionate carbon fixation bicycle in E. coli: Toward horizontal transfer of autotrophic growth. Metab. Eng. 16, 130-139
-
(2013)
Coli: Toward Horizontal Transfer of Autotrophic Growth. Metab. Eng.
, vol.16
, pp. 130-139
-
-
Mattozzi, M.D.1
Ziesack, M.2
Voges, M.J.3
Silver, P.A.4
Way, J.C.5
-
11
-
-
77649305316
-
BglBricks: Aflexible standard for biological part assembly
-
Anderson, J. C., Dueber, J. E., Leguia, M., Wu, G. C., Goler, J. A., Arkin, A. P., and Keasling, J. D. (2010) BglBricks: Aflexible standard for biological part assembly. J. Biol. Eng. 4, 1
-
(2010)
J. Biol. Eng.
, vol.4
, pp. 1
-
-
Anderson, J.C.1
Dueber, J.E.2
Leguia, M.3
Wu, G.C.4
Goler, J.A.5
Arkin, A.P.6
Keasling, J.D.7
-
12
-
-
34248592701
-
-
Humana Press, New York
-
Mackey, S. R., Ditty, J. L., Clerico, E. M., and Golden, S. S. (2007) Detection of rhythmic bioluminescence from luciferase reporters in cyanobacteria. in Circadian Rhythms (Rosato, E., ed), pp. 115-129, Humana Press, New York
-
(2007)
Detection of Rhythmic Bioluminescence from Luciferase Reporters in Cyanobacteria. in Circadian Rhythms (Rosato, E., Ed)
, pp. 115-129
-
-
Mackey, S.R.1
Ditty, J.L.2
Clerico, E.M.3
Golden, S.S.4
-
13
-
-
77953076264
-
Engineering cyanobacteria to synthesize and export hy-drophilic products
-
Niederholtmeyer, H., Wolfstädter, B. T., Savage, D. F., Silver, P. A., and Way, J. C. (2010) Engineering cyanobacteria to synthesize and export hy-drophilic products. Appl. Environ. Microbiol. 76, 3462-3466
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, pp. 3462-3466
-
-
Niederholtmeyer, H.1
Wolfstädter, B.T.2
Savage, D.F.3
Silver, P.A.4
Way, J.C.5
-
14
-
-
84887117678
-
The crystal structures of the tri-functional Chloroflexus aurantiacus and bi-functional Rhodobacter spha-eroides malyl-CoA lyases and comparison with CitE-like superfamily enzymes and malate synthases
-
Zarzycki, J., and Kerfeld, C. A. (2013) The crystal structures of the tri-functional Chloroflexus aurantiacus and bi-functional Rhodobacter spha-eroides malyl-CoA lyases and comparison with CitE-like superfamily enzymes and malate synthases. BMC Struct. Biol. 13, 28
-
(2013)
BMC Struct. Biol.
, vol.13
, pp. 28
-
-
Zarzycki, J.1
Kerfeld, C.A.2
-
17
-
-
79952744660
-
Rewiring hydrogenase-dependent redox circuits in cyanobacteria
-
Ducat, D. C., Sachdeva, G., and Silver, P. A. (2011) Rewiring hydrogenase-dependent redox circuits in cyanobacteria. Proc. Natl. Acad. Sci. U.S.A. 108, 3941-3946
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 3941-3946
-
-
Ducat, D.C.1
Sachdeva, G.2
Silver, P.A.3
-
18
-
-
34248575624
-
-
Humana Press, New York
-
Clerico, E. M., Ditty, J. L., and Golden, S. S. (2007) Specialized techniques for site-directed mutagenesis incyanobacteria. in Circadian Rhythms(Ro-sato, E., ed), pp. 155-171, Humana Press, New York
-
(2007)
Specialized Techniques for Site-directed Mutagenesis Incyanobacteria. in Circadian Rhythms(Ro-sato, E., Ed)
, pp. 155-171
-
-
Clerico, E.M.1
Ditty, J.L.2
Golden, S.S.3
-
19
-
-
84886337488
-
Metabolic engineering of recombinant E coli for the production of 3-hy-droxypropionate
-
John Wiley & Sons, Inc., New York
-
Lipscomb, T. W., Lipscomb, M. L., Gill, R. T., and Lynch, M. D. (2012) Metabolic engineering of recombinant E. coli for the production of 3-hy-droxypropionate. in Engineering Complex Phenotypes in Industrial Strains, pp. 185-200, John Wiley & Sons, Inc., New York
-
(2012)
Engineering Complex Phenotypes in Industrial Strains
, pp. 185-200
-
-
Lipscomb, T.W.1
Lipscomb, M.L.2
Gill, R.T.3
Lynch, M.D.4
-
20
-
-
0035374693
-
Studies of propionate toxicity in Salmonella enterica identify 2-methylcitrate as a potent inhibitor of cell growth
-
Horswill, A.R., Dudding, A. R., and Escalante-Semerena, J. C. (2001) Studies of propionate toxicity in Salmonella enterica identify 2-methylcitrate as a potent inhibitor of cell growth. J. Biol. Chem. 276, 19094-19101
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 19094-19101
-
-
Horswill, A.R.1
Dudding, A.R.2
Escalante-Semerena, J.C.3
-
21
-
-
78649716727
-
Manufacturing molecules through metabolic engineering
-
Keasling, J. D. (2010) Manufacturing molecules through metabolic engineering. Science 330, 1355-1358
-
(2010)
Science
, vol.330
, pp. 1355-1358
-
-
Keasling, J.D.1
-
22
-
-
33749858537
-
Meta-genomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities
-
García Martín, H., Ivanova, N., Kunin, V., Warnecke, F., Barry, K. W., McHardy, A. C., Yeates, C., He, S., Salamov, A. A., Szeto, E., Dalin, E., Putnam, N. H., Shapiro, H. J., Pangilinan, J. L., Rigoutsos, I., Kyrpides, N. C., Blackall, L. L., McMahon, K. D., and Hugenholtz, P. (2006) Meta-genomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities. Nat. Biotechnol. 24, 1263-1269
-
(2006)
Nat. Biotechnol.
, vol.24
, pp. 1263-1269
-
-
García Martín, H.1
Ivanova, N.2
Kunin, V.3
Warnecke, F.4
Barry, K.W.5
McHardy, A.C.6
Yeates, C.7
He, S.8
Salamov, A.A.9
Szeto, E.10
Dalin, E.11
Putnam, N.H.12
Shapiro, H.J.13
Pangilinan, J.L.14
Rigoutsos, I.15
Kyrpides, N.C.16
Blackall, L.L.17
McMahon, K.D.18
Hugenholtz, P.19
-
23
-
-
0032822623
-
Enrichment, phylogenetic analysis and detection of a bacterium that performs enhanced biological phosphate removal in activated sludge
-
Hesselmann, R. P., Werlen, C., Hahn, D., van der Meer, J. R., and Zehnder, A. J. (1999) Enrichment, phylogenetic analysis and detection of a bacterium that performs enhanced biological phosphate removal in activated sludge. Syst. Appl. Microbiol. 22, 454-465
-
(1999)
Syst. Appl. Microbiol.
, vol.22
, pp. 454-465
-
-
Hesselmann, R.P.1
Werlen, C.2
Hahn, D.3
Van Der Meer, J.R.4
Zehnder, A.J.5
-
24
-
-
80052766606
-
Coassimilation of organic substrates via the autotrophic 3-hydroxypropionate bi-cycle in Chloroflexus aurantia-cus
-
Zarzycki, J., and Fuchs, G. (2011) Coassimilation of organic substrates via the autotrophic 3-hydroxypropionate bi-cycle in Chloroflexus aurantia-cus. Appl. Environ. Microbiol. 77, 6181-6188
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, pp. 6181-6188
-
-
Zarzycki, J.1
Fuchs, G.2
-
25
-
-
84898077670
-
Anaerobic digestion of lignocellulosic wastes by rumen microorganisms: Chemical and kinetic analyses
-
(Fang, H. H. P., ed), Imperial College Press, London
-
Hu, Z.-H., Yue, Z.-B., Liu, S.-Y., G.-P., S., and Yu, H.-Q. (2010) Anaerobic digestion of lignocellulosic wastes by rumen microorganisms: Chemical and kinetic analyses. in Environmental Anaerobic Technology: Applications and New Developments (Fang, H. H. P., ed), pp. 259-278, Imperial College Press, London
-
(2010)
Environmental Anaerobic Technology: Applications and New Developments
, pp. 259-278
-
-
Hu, Z.-H.1
Yue, Z.-B.2
Liu, S.-Y.G.-P.S.3
Yu, H.-Q.4
-
26
-
-
0024185817
-
Estimating the rate of photorespiration in leaves
-
Sharkey, T. D. (1988) Estimating the rate of photorespiration in leaves. Physiol. Plant. 73, 147-152
-
(1988)
Physiol. Plant.
, vol.73
, pp. 147-152
-
-
Sharkey, T.D.1
-
27
-
-
0028878442
-
The compartmentation of acetyl-coenzyme A carboxylase in plants
-
Sasaki, Y., Konishi, T., and Nagano, Y. (1995) The compartmentation of acetyl-coenzyme A carboxylase in plants. Plant Physiol 108, 445-449
-
(1995)
Plant Physiol
, vol.108
, pp. 445-449
-
-
Sasaki, Y.1
Konishi, T.2
Nagano, Y.3
-
28
-
-
55949125406
-
The photorespiratory glycolate metabolism is essential for cyanobacteria and might have been conveyed endosymbiontically to plants
-
Eisenhut, M., Ruth, W., Haimovich, M., Bauwe, H., Kaplan, A., and Hage-mann, M. (2008) The photorespiratory glycolate metabolism is essential for cyanobacteria and might have been conveyed endosymbiontically to plants. Proc. Natl. Acad. Sci. U.S.A. 105, 17199-17204
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 17199-17204
-
-
Eisenhut, M.1
Ruth, W.2
Haimovich, M.3
Bauwe, H.4
Kaplan, A.5
Hage-Mann, M.6
-
29
-
-
84875723302
-
Cyanobac-terial-based approaches to improving photosynthesis in plants
-
Zarzycki, J., Axen, S. D., Kinney, J. N., and Kerfeld, C. A. (2013) Cyanobac-terial-based approaches to improving photosynthesis in plants. J. Exp. Bot. 64, 787-798
-
(2013)
J. Exp. Bot.
, vol.64
, pp. 787-798
-
-
Zarzycki, J.1
Axen, S.D.2
Kinney, J.N.3
Kerfeld, C.A.4
-
30
-
-
33748763287
-
The plantlike C2 glycolate cycle and the bacterial-like glycerate pathway cooperate in phosphoglycolate metabolism in cyanobacteria
-
Eisenhut, M., Kahlon, S., Hasse, D., Ewald, R., Lieman-Hurwitz, J., Ogawa, T., Ruth, W., Bauwe, H., Kaplan, A., and Hagemann, M. (2006) The plantlike C2 glycolate cycle and the bacterial-like glycerate pathway cooperate in phosphoglycolate metabolism in cyanobacteria. Plant Physiol 142, 333-342
-
(2006)
Plant Physiol
, vol.142
, pp. 333-342
-
-
Eisenhut, M.1
Kahlon, S.2
Hasse, D.3
Ewald, R.4
Lieman-Hurwitz, J.5
Ogawa, T.6
Ruth, W.7
Bauwe, H.8
Kaplan, A.9
Hagemann, M.10
-
31
-
-
44249111668
-
Application of functional genomics to pathway optimization for increased isoprenoid production
-
Kizer, L., Pitera, D. J., Pfleger, B. F., and Keasling, J. D. (2008) Application of functional genomics to pathway optimization for increased isoprenoid production. Appl. Environ. Microbiol. 74, 3229-3241
-
(2008)
Appl. Environ. Microbiol.
, vol.74
, pp. 3229-3241
-
-
Kizer, L.1
Pitera, D.J.2
Pfleger, B.F.3
Keasling, J.D.4
-
32
-
-
84887422015
-
Engineering dynamic pathway regulation using stress-response promoters
-
Dahl, R. H., Zhang, F., Alonso-Gutierrez, J., Baidoo, E., Batth, T. S., Red-ding-Johanson, A. M., Petzold, C. J., Mukhopadhyay, A., Lee, T.S., Adams, P. D., Keasling, J. D. (2013) Engineering dynamic pathway regulation using stress-response promoters. Nat. Biotechnol. 31, 1039-1046
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 1039-1046
-
-
Dahl, R.H.1
Zhang, F.2
Alonso-Gutierrez, J.3
Baidoo, E.4
Batth, T.S.5
Red-Ding-Johanson, A.M.6
Petzold, C.J.7
Mukhopadhyay, A.8
Lee, T.S.9
Adams, P.D.10
Keasling, J.D.11
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