-
1
-
-
33846000313
-
Ensemble Docking of Multiple Protein Structures: Considering Protein Structural Variations in Molecular Docking
-
Huang, S.-Y.; Zou, X. Ensemble Docking of Multiple Protein Structures: Considering Protein Structural Variations in Molecular Docking Proteins: Struct., Funct., Bioinfo. 2007, 66, 399-421 10.1002/prot.21214
-
(2007)
Proteins: Struct., Funct., Bioinfo.
, vol.66
, pp. 399-421
-
-
Huang, S.-Y.1
Zou, X.2
-
2
-
-
33750124980
-
Extra Precision Glide: Docking and Scoring Incorporating a Model of Hydrophobic Enclosure for Protein-Ligand Complexes
-
Friesner, R. A.; Murphy, R. B.; Repasky, M. P.; Frye, L. L.; Greenwood, J. R.; Halgren, T. A.; Sanschagrin, P. C.; Mainz, D. T. Extra Precision Glide: Docking and Scoring Incorporating a Model of Hydrophobic Enclosure for Protein-Ligand Complexes J. Med. Chem. 2006, 49, 6177-6196 10.1021/jm051256o
-
(2006)
J. Med. Chem.
, vol.49
, pp. 6177-6196
-
-
Friesner, R.A.1
Murphy, R.B.2
Repasky, M.P.3
Frye, L.L.4
Greenwood, J.R.5
Halgren, T.A.6
Sanschagrin, P.C.7
Mainz, D.T.8
-
3
-
-
62449330667
-
Empirical Scoring Functions for Advanced Protein-Ligand Docking with PLANTS
-
Korb, O.; Stützle, T.; Exner, T. E. Empirical Scoring Functions for Advanced Protein-Ligand Docking with PLANTS J. Chem. Inf. Model. 2009, 49, 84-96 10.1021/ci800298z
-
(2009)
J. Chem. Inf. Model.
, vol.49
, pp. 84-96
-
-
Korb, O.1
Stützle, T.2
Exner, T.E.3
-
4
-
-
84863100633
-
Exhaustive Search and Solvated Interaction Energy (SIE) for Virtual Screening and Affinity Prediction
-
Sulea, T.; Hogues, H.; Purisima, E. O. Exhaustive Search and Solvated Interaction Energy (SIE) for Virtual Screening and Affinity Prediction J. Comput.-Aided Mol. Des. 2012, 26, 617-633 10.1007/s10822-011-9529-7
-
(2012)
J. Comput.-Aided Mol. Des.
, vol.26
, pp. 617-633
-
-
Sulea, T.1
Hogues, H.2
Purisima, E.O.3
-
5
-
-
0031552362
-
Development and Validation of a Genetic Algorithm for Flexible Docking
-
Jones, G.; Willett, P.; Glen, R. C.; Leach, A. R.; Taylor, R. Development and Validation of a Genetic Algorithm for Flexible Docking J. Mol. Biol. 1997, 267, 727-748 10.1006/jmbi.1996.0897
-
(1997)
J. Mol. Biol.
, vol.267
, pp. 727-748
-
-
Jones, G.1
Willett, P.2
Glen, R.C.3
Leach, A.R.4
Taylor, R.5
-
6
-
-
84883247468
-
Lessons Learned in Empirical Scoring with Smina from the CSAR 2011 Benchmarking Exercise
-
Koes, D. R.; Baumgartner, M. P.; Camacho, C. J. Lessons Learned in Empirical Scoring with Smina from the CSAR 2011 Benchmarking Exercise J. Chem. Inf. Model. 2013, 53, 1893-1904 10.1021/ci300604z
-
(2013)
J. Chem. Inf. Model.
, vol.53
, pp. 1893-1904
-
-
Koes, D.R.1
Baumgartner, M.P.2
Camacho, C.J.3
-
7
-
-
34147107263
-
PELE: Protein Energy Landscape Exploration. A Novel Monte Carlo Based Technique
-
Borrelli, K. W.; Vitalis, A.; Alcantara, R.; Guallar, V. PELE: Protein Energy Landscape Exploration. A Novel Monte Carlo Based Technique J. Chem. Theory Comput. 2005, 1, 1304-1311 10.1021/ct0501811
-
(2005)
J. Chem. Theory Comput.
, vol.1
, pp. 1304-1311
-
-
Borrelli, K.W.1
Vitalis, A.2
Alcantara, R.3
Guallar, V.4
-
8
-
-
0030599010
-
A Fast Flexible Docking Method Using an Incremental Construction Algorithm
-
Rarey, M.; Kramer, B.; Lengauer, T.; Klebe, G. A Fast Flexible Docking Method Using an Incremental Construction Algorithm J. Mol. Biol. 1996, 261, 470-489 10.1006/jmbi.1996.0477
-
(1996)
J. Mol. Biol.
, vol.261
, pp. 470-489
-
-
Rarey, M.1
Kramer, B.2
Lengauer, T.3
Klebe, G.4
-
9
-
-
77957237749
-
Rapid Flexible Docking Using a Stochastic Rotamer Library of Ligands
-
Ding, F.; Yin, S.; Dokholyan, N. V. Rapid Flexible Docking Using a Stochastic Rotamer Library of Ligands J. Chem. Inf. Model. 2010, 50, 1623-1632 10.1021/ci100218t
-
(2010)
J. Chem. Inf. Model.
, vol.50
, pp. 1623-1632
-
-
Ding, F.1
Yin, S.2
Dokholyan, N.V.3
-
10
-
-
33750574927
-
An Iterative Knowledge-Based Scoring Function to Predict Protein-ligand Interactions: II. Validation of the Scoring Function
-
Huang, S.-Y.; Zou, X. An Iterative Knowledge-Based Scoring Function to Predict Protein-ligand Interactions: II. Validation of the Scoring Function J. Comput. Chem. 2006, 27, 1876-1882 10.1002/jcc.20505
-
(2006)
J. Comput. Chem.
, vol.27
, pp. 1876-1882
-
-
Huang, S.-Y.1
Zou, X.2
-
11
-
-
84976522772
-
HybridDock: A Hybrid Protein-Ligand Docking Protocol Integrating Protein- and Ligand-Based Approaches
-
Huang, S.-Y.; Li, M.; Wang, J.; Pan, Y. HybridDock: A Hybrid Protein-Ligand Docking Protocol Integrating Protein- and Ligand-Based Approaches J. Chem. Inf. Model. 2015, 10.1021/acs.jcim.5b00275
-
(2015)
J. Chem. Inf. Model.
-
-
Huang, S.-Y.1
Li, M.2
Wang, J.3
Pan, Y.4
-
12
-
-
76149120388
-
AutoDock Vina: Improving the Speed and Accuracy of Docking with a New Scoring Function, Efficient Optimization, and Multithreading
-
Trott, O.; Olson, A. J. AutoDock Vina: Improving the Speed and Accuracy of Docking with a New Scoring Function, Efficient Optimization, and Multithreading J. Comput. Chem. 2010, 31, 455-461 10.1002/jcc.21334
-
(2010)
J. Comput. Chem.
, vol.31
, pp. 455-461
-
-
Trott, O.1
Olson, A.J.2
-
13
-
-
84976469356
-
Choosing the Optimal Rigid Receptor for Docking and Scoring in the CSAR 2013/2014 Experiment
-
Baumgartner, M. P.; Camacho, C. J. Choosing the Optimal Rigid Receptor for Docking and Scoring in the CSAR 2013/2014 Experiment J. Chem. Inf. Model. 2015, 10.1021/acs.jcim.5b00338
-
(2015)
J. Chem. Inf. Model.
-
-
Baumgartner, M.P.1
Camacho, C.J.2
-
14
-
-
84874111137
-
A Consistent Description of HYdrogen Bond and DEhydration Energies in Protein-ligand Complexes: Methods behind the HYDE Scoring Function
-
Schneider, N.; Lange, G.; Hindle, S.; Klein, R.; Rarey, M. A Consistent Description of HYdrogen Bond and DEhydration Energies in Protein-ligand Complexes: Methods behind the HYDE Scoring Function J. Comput.-Aided Mol. Des. 2013, 27, 15-29 10.1007/s10822-012-9626-2
-
(2013)
J. Comput.-Aided Mol. Des.
, vol.27
, pp. 15-29
-
-
Schneider, N.1
Lange, G.2
Hindle, S.3
Klein, R.4
Rarey, M.5
-
15
-
-
84976495621
-
-
ROCS v. 3.2.1; OpenEye Scientific Software, Inc. Santa Fe, NM, USA. 2015, accessed: February 23
-
ROCS v. 3.2.1; OpenEye Scientific Software, Inc., Santa Fe, NM, USA., 2015, accessed: February 23, 2016.
-
(2016)
-
-
-
16
-
-
84976376865
-
Application of Shape Similarity in Pose Selection and Virtual Screening in CSARdock2014 Exercise
-
Kumar, A.; Zhang, K. Y. J. Application of Shape Similarity in Pose Selection and Virtual Screening in CSARdock2014 Exercise J. Chem. Inf. Model. 2015, 10.1021/acs.jcim.5b00279
-
(2015)
J. Chem. Inf. Model.
-
-
Kumar, A.1
Zhang, K.Y.J.2
-
17
-
-
80053333972
-
CSAR Benchmark Exercise of 2010: Selection of the Protein-Ligand Complexes
-
Dunbar, J. B.; Smith, R. D.; Yang, C.-Y.; Ung, P. M.-U.; Lexa, K. W.; Khazanov, N. A.; Stuckey, J. A.; Wang, S.; Carlson, H. A. CSAR Benchmark Exercise of 2010: Selection of the Protein-Ligand Complexes J. Chem. Inf. Model. 2011, 51, 2036-2046 10.1021/ci200082t
-
(2011)
J. Chem. Inf. Model.
, vol.51
, pp. 2036-2046
-
-
Dunbar, J.B.1
Smith, R.D.2
Yang, C.-Y.3
Ung, P.M.-U.4
Lexa, K.W.5
Khazanov, N.A.6
Stuckey, J.A.7
Wang, S.8
Carlson, H.A.9
-
18
-
-
80053330055
-
CSAR Benchmark Exercise of 2010: Combined Evaluation Across All Submitted Scoring Functions
-
Smith, R. D.; Dunbar, J. B.; Ung, P. M.-U.; Esposito, E. X.; Yang, C.-Y.; Wang, S.; Carlson, H. A. CSAR Benchmark Exercise of 2010: Combined Evaluation Across All Submitted Scoring Functions J. Chem. Inf. Model. 2011, 51, 2115-2131 10.1021/ci200269q
-
(2011)
J. Chem. Inf. Model.
, vol.51
, pp. 2115-2131
-
-
Smith, R.D.1
Dunbar, J.B.2
Ung, P.M.-U.3
Esposito, E.X.4
Yang, C.-Y.5
Wang, S.6
Carlson, H.A.7
-
19
-
-
84893021599
-
Critical Assessment of Methods of Protein Structure Prediction (CASP) - Round X
-
Moult, J.; Fidelis, K.; Kryshtafovych, A.; Schwede, T.; Tramontano, A. Critical Assessment of Methods of Protein Structure Prediction (CASP)-Round X Proteins: Struct., Funct., Bioinfo. 2014, 82, 1-6 10.1002/prot.24452
-
(2014)
Proteins: Struct., Funct., Bioinfo.
, vol.82
, pp. 1-6
-
-
Moult, J.1
Fidelis, K.2
Kryshtafovych, A.3
Schwede, T.4
Tramontano, A.5
-
20
-
-
77957934896
-
Docking and Scoring Protein Interactions: CAPRI 2009
-
Lensink, M. F.; Wodak, S. J. Docking and Scoring Protein Interactions: CAPRI 2009 Proteins: Struct., Funct., Bioinfo. 2010, 78, 3073-3084 10.1002/prot.22818
-
(2010)
Proteins: Struct., Funct., Bioinfo.
, vol.78
, pp. 3073-3084
-
-
Lensink, M.F.1
Wodak, S.J.2
-
21
-
-
84888289172
-
Docking, Scoring, and Affinity Prediction in CAPRI
-
Lensink, M. F.; Wodak, S. J. Docking, Scoring, and Affinity Prediction in CAPRI Proteins: Struct., Funct., Bioinfo. 2013, 81, 2082-2095 10.1002/prot.24428
-
(2013)
Proteins: Struct., Funct., Bioinfo.
, vol.81
, pp. 2082-2095
-
-
Lensink, M.F.1
Wodak, S.J.2
-
22
-
-
39749178969
-
Predicting Small-Molecule Solvation Free Energies: An Informal Blind Test for Computational Chemistry
-
Nicholls, A.; Mobley, D. L.; Guthrie, J. P.; Chodera, J. D.; Bayly, C. I.; Cooper, M. D.; Pande, V. S. Predicting Small-Molecule Solvation Free Energies: An Informal Blind Test for Computational Chemistry J. Med. Chem. 2008, 51, 769-779 10.1021/jm070549+
-
(2008)
J. Med. Chem.
, vol.51
, pp. 769-779
-
-
Nicholls, A.1
Mobley, D.L.2
Guthrie, J.P.3
Chodera, J.D.4
Bayly, C.I.5
Cooper, M.D.6
Pande, V.S.7
-
23
-
-
77953321666
-
SAMPL2 Challenge: Prediction of Solvation Energies and Tautomer Ratios
-
Skillman, A. G.; Geballe, M. T.; Nicholls, A. SAMPL2 Challenge: Prediction of Solvation Energies and Tautomer Ratios J. Comput.-Aided Mol. Des. 2010, 24, 257-258 10.1007/s10822-010-9358-0
-
(2010)
J. Comput.-Aided Mol. Des.
, vol.24
, pp. 257-258
-
-
Skillman, A.G.1
Geballe, M.T.2
Nicholls, A.3
-
24
-
-
84863100210
-
SAMPL3: Blinded Prediction of Host-guest Binding Affinities, Hydration Free Energies, and Trypsin Inhibitors
-
Skillman, A. G. SAMPL3: Blinded Prediction of Host-guest Binding Affinities, Hydration Free Energies, and Trypsin Inhibitors J. Comput.-Aided Mol. Des. 2012, 26, 473-474 10.1007/s10822-012-9580-z
-
(2012)
J. Comput.-Aided Mol. Des.
, vol.26
, pp. 473-474
-
-
Skillman, A.G.1
-
25
-
-
84899935825
-
SAMPL4, a Blind Challenge for Computational Solvation Free Energies: The Compounds Considered
-
Guthrie, J. P. SAMPL4, a Blind Challenge for Computational Solvation Free Energies: The Compounds Considered J. Comput.-Aided Mol. Des. 2014, 28, 151-168 10.1007/s10822-014-9738-y
-
(2014)
J. Comput.-Aided Mol. Des.
, vol.28
, pp. 151-168
-
-
Guthrie, J.P.1
-
26
-
-
84883209345
-
CSAR Benchmark Exercise 2011-2012: Evaluation of Results from Docking and Relative Ranking of Blinded Congeneric Series
-
Damm-Ganamet, K. L.; Smith, R. D.; Dunbar, J. B.; Stuckey, J. A.; Carlson, H. A. CSAR Benchmark Exercise 2011-2012: Evaluation of Results from Docking and Relative Ranking of Blinded Congeneric Series J. Chem. Inf. Model. 2013, 53, 1853-1870 10.1021/ci400025f
-
(2013)
J. Chem. Inf. Model.
, vol.53
, pp. 1853-1870
-
-
Damm-Ganamet, K.L.1
Smith, R.D.2
Dunbar, J.B.3
Stuckey, J.A.4
Carlson, H.A.5
-
27
-
-
84976347059
-
CSAR Benchmark Exercise 2013: Evaluation of Results from a Combined Computational Protein Design, Docking, and Scoring/Ranking Challenge
-
Smith, R. D.; Damm-Ganamet, K. L.; Dunbar, J. B.; Ahmed, A.; Chinnaswamy, K.; Delproposto, J. E.; Kubish, G. M.; Tinberg, C. E.; Khare, S. D.; Dou, J.; Doyle, L.; Stuckey, J. A.; Baker, D.; Carlson, H. A. CSAR Benchmark Exercise 2013: Evaluation of Results from a Combined Computational Protein Design, Docking, and Scoring/Ranking Challenge J. Chem. Inf. Model. 2015, 10.1021/acs.jcim.5b00387
-
(2015)
J. Chem. Inf. Model.
-
-
Smith, R.D.1
Damm-Ganamet, K.L.2
Dunbar, J.B.3
Ahmed, A.4
Chinnaswamy, K.5
Delproposto, J.E.6
Kubish, G.M.7
Tinberg, C.E.8
Khare, S.D.9
Dou, J.10
Doyle, L.11
Stuckey, J.A.12
Baker, D.13
Carlson, H.A.14
-
28
-
-
84883227058
-
CSAR Data Set Release 2012: Ligands, Affinities, Complexes, and Docking Decoys
-
Dunbar, J. B.; Smith, R. D.; Damm-Ganamet, K. L.; Ahmed, A.; Esposito, E. X.; Delproposto, J.; Chinnaswamy, K.; Kang, Y.-N.; Kubish, G.; Gestwicki, J. E.; Stuckey, J. A.; Carlson, H. A. CSAR Data Set Release 2012: Ligands, Affinities, Complexes, and Docking Decoys J. Chem. Inf. Model. 2013, 53, 1842-1852 10.1021/ci4000486
-
(2013)
J. Chem. Inf. Model.
, vol.53
, pp. 1842-1852
-
-
Dunbar, J.B.1
Smith, R.D.2
Damm-Ganamet, K.L.3
Ahmed, A.4
Esposito, E.X.5
Delproposto, J.6
Chinnaswamy, K.7
Kang, Y.-N.8
Kubish, G.9
Gestwicki, J.E.10
Stuckey, J.A.11
Carlson, H.A.12
-
29
-
-
0033954256
-
The Protein Data Bank
-
Berman, H. M.; Westbrook, J.; Feng, Z.; Gilliland, G.; Bhat, T. N.; Weissig, H.; Shindyalov, I. N.; Bourne, P. E. The Protein Data Bank Nucleic Acids Res. 2000, 28, 235-242 10.1093/nar/28.1.235
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
30
-
-
3042647771
-
Comparative Genomic Assessment of Novel Broad-Spectrum Targets for Antibacterial Drugs
-
White, T. A.; Kell, D. B. Comparative Genomic Assessment of Novel Broad-Spectrum Targets for Antibacterial Drugs Comp. Funct. Genomics 2004, 5, 304-327 10.1002/cfg.411
-
(2004)
Comp. Funct. Genomics
, vol.5
, pp. 304-327
-
-
White, T.A.1
Kell, D.B.2
-
31
-
-
84976475450
-
-
Identification of the First Potent Inhibitors of tRNA (m1G37) Methlytransferase (TrmD) via an Integrated Screening Approach. Abstracts, 64th Southeast Regional Meeting of the American Chemical Society, November 14-17
-
Price, A. T. Identification of the First Potent Inhibitors of tRNA (m1G37) Methlytransferase (TrmD) via an Integrated Screening Approach., Abstracts, 64th Southeast Regional Meeting of the American Chemical Society, November 14-17, 2012.
-
(2012)
-
-
Price, A.T.1
-
32
-
-
84976466767
-
Spleen Tyrosine Kinase: A Novel Target in Autoimmunity
-
Kapur, S. InTech: Rijeka, Croatia
-
McAdoo, S. P.; Tam, F. W. K. Spleen Tyrosine Kinase: A Novel Target in Autoimmunity. In Immunosuppression-Role in Health and Diseases; Kapur, S., Ed.; InTech: Rijeka, Croatia, 2012.
-
(2012)
Immunosuppression - Role in Health and Diseases
-
-
McAdoo, S.P.1
Tam, F.W.K.2
-
33
-
-
84897112247
-
Spleen Tyrosine Kinase Inhibitors for Rheumatoid Arthritis: Where Are We Now?
-
Scott, I. C.; Scott, D. L. Spleen Tyrosine Kinase Inhibitors for Rheumatoid Arthritis: Where Are We Now? Drugs 2014, 74, 415-422 10.1007/s40265-014-0193-9
-
(2014)
Drugs
, vol.74
, pp. 415-422
-
-
Scott, I.C.1
Scott, D.L.2
-
34
-
-
84912051613
-
Effects of Fostamatinib, an Oral Spleen Tyrosine Kinase Inhibitor, in Rheumatoid Arthritis Patients with an Inadequate Response to Methotrexate: Results from a Phase III, Multicenter, Randomized, Double-Blind, Placebo-Controlled, Parallel-Group Study
-
Weinblatt, M. E.; Genovese, M. C.; Ho, M.; Hollis, S.; Rosiak-Jedrychowicz, K.; Kavanaugh, A.; Millson, D. S.; Leon, G.; Wang, M.; van der Heijde, D. Effects of Fostamatinib, an Oral Spleen Tyrosine Kinase Inhibitor, in Rheumatoid Arthritis Patients With an Inadequate Response to Methotrexate: Results From a Phase III, Multicenter, Randomized, Double-Blind, Placebo-Controlled, Parallel-Group Study Arthritis Rheumatol. 2014, 66, 3255-3264 10.1002/art.38851
-
(2014)
Arthritis Rheumatol.
, vol.66
, pp. 3255-3264
-
-
Weinblatt, M.E.1
Genovese, M.C.2
Ho, M.3
Hollis, S.4
Rosiak-Jedrychowicz, K.5
Kavanaugh, A.6
Millson, D.S.7
Leon, G.8
Wang, M.9
Van Der Heijde, D.10
-
35
-
-
77951002653
-
Inhibition of Syk with Fostamatinib Disodium Has Significant Clinical Activity in Non-Hodgkin Lymphoma and Chronic Lymphocytic Leukemia
-
Friedberg, J. W.; Sharman, J.; Sweetenham, J.; Johnston, P. B.; Vose, J. M.; LaCasce, A.; Schaefer-Cutillo, J.; De Vos, S.; Sinha, R.; Leonard, J. P.; Cripe, L. D.; Gregory, S. A.; Sterba, M. P.; Lowe, A. M.; Levy, R.; Shipp, M. A. Inhibition of Syk with Fostamatinib Disodium Has Significant Clinical Activity in Non-Hodgkin Lymphoma and Chronic Lymphocytic Leukemia Blood 2010, 115, 2578-2585 10.1182/blood-2009-08-236471
-
(2010)
Blood
, vol.115
, pp. 2578-2585
-
-
Friedberg, J.W.1
Sharman, J.2
Sweetenham, J.3
Johnston, P.B.4
Vose, J.M.5
LaCasce, A.6
Schaefer-Cutillo, J.7
De Vos, S.8
Sinha, R.9
Leonard, J.P.10
Cripe, L.D.11
Gregory, S.A.12
Sterba, M.P.13
Lowe, A.M.14
Levy, R.15
Shipp, M.A.16
-
36
-
-
78650619315
-
Oral Rivaroxaban for Symptomatic Venous Thromboembolism
-
EINSTEIN Investigators
-
EINSTEIN Investigators: Bauersachs, R.; Berkowitz, S. D.; Brenner, B.; Buller, H. R.; Decousus, H.; Gallus, A. S.; Lensing, A. W.; Misselwitz, F.; Prins, M. H.; Raskob, G. E.; Segers, A.; Verhamme, P.; Wells, P.; Agnelli, G.; Bounameaux, H.; Cohen, A.; Davidson, B. L.; Piovella, F.; Schellong, S. Oral Rivaroxaban for Symptomatic Venous Thromboembolism N. Engl. J. Med. 2010, 363, 2499-2510 10.1056/NEJMoa1007903
-
(2010)
N. Engl. J. Med.
, vol.363
, pp. 2499-2510
-
-
Bauersachs, R.1
Berkowitz, S.D.2
Brenner, B.3
Buller, H.R.4
Decousus, H.5
Gallus, A.S.6
Lensing, A.W.7
Misselwitz, F.8
Prins, M.H.9
Raskob, G.E.10
Segers, A.11
Verhamme, P.12
Wells, P.13
Agnelli, G.14
Bounameaux, H.15
Cohen, A.16
Davidson, B.L.17
Piovella, F.18
Schellong, S.19
-
37
-
-
84880327613
-
Oral Apixaban for the Treatment of Acute Venous Thromboembolism
-
Agnelli, G.; Buller, H. R.; Cohen, A.; Curto, M.; Gallus, A. S.; Johnson, M.; Masiukiewicz, U.; Pak, R.; Thompson, J.; Raskob, G. E.; Weitz, J. I. Oral Apixaban for the Treatment of Acute Venous Thromboembolism N. Engl. J. Med. 2013, 369, 799-808 10.1056/NEJMoa1302507
-
(2013)
N. Engl. J. Med.
, vol.369
, pp. 799-808
-
-
Agnelli, G.1
Buller, H.R.2
Cohen, A.3
Curto, M.4
Gallus, A.S.5
Johnson, M.6
Masiukiewicz, U.7
Pak, R.8
Thompson, J.9
Raskob, G.E.10
Weitz, J.I.11
-
38
-
-
38349147756
-
New Oral Anticoagulants in Atrial Fibrillation
-
Turpie, A. G. G. New Oral Anticoagulants in Atrial Fibrillation Eur. Heart J. 2007, 29, 155-165 10.1093/eurheartj/ehm575
-
(2007)
Eur. Heart J.
, vol.29
, pp. 155-165
-
-
Turpie, A.G.G.1
-
39
-
-
40949163431
-
Role of the Active-Site Solvent in the Thermodynamics of Factor Xa Ligand Binding
-
Abel, R.; Young, T.; Farid, R.; Berne, B. J.; Friesner, R. A. Role of the Active-Site Solvent in the Thermodynamics of Factor Xa Ligand Binding J. Am. Chem. Soc. 2008, 130, 2817-2831 10.1021/ja0771033
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 2817-2831
-
-
Abel, R.1
Young, T.2
Farid, R.3
Berne, B.J.4
Friesner, R.A.5
-
40
-
-
33746486222
-
Design and Synthesis of Orally Active Pyrrolidin-2-One-Based Factor Xa Inhibitors
-
Watson, N. S.; Brown, D.; Campbell, M.; Chan, C.; Chaudry, L.; Convery, M. A.; Fenwick, R.; Hamblin, J. N.; Haslam, C.; Kelly, H. A.; King, N. P.; Kurtis, C. L.; Leach, A. R.; Manchee, G. R.; Mason, A. M.; Mitchell, C.; Patel, C.; Patel, V. K.; Senger, S.; Shah, G. P.; Weston, H. E.; Whitworth, C.; Young, R. J. Design and Synthesis of Orally Active Pyrrolidin-2-One-Based Factor Xa Inhibitors Bioorg. Med. Chem. Lett. 2006, 16, 3784-3788 10.1016/j.bmcl.2006.04.053
-
(2006)
Bioorg. Med. Chem. Lett.
, vol.16
, pp. 3784-3788
-
-
Watson, N.S.1
Brown, D.2
Campbell, M.3
Chan, C.4
Chaudry, L.5
Convery, M.A.6
Fenwick, R.7
Hamblin, J.N.8
Haslam, C.9
Kelly, H.A.10
King, N.P.11
Kurtis, C.L.12
Leach, A.R.13
Manchee, G.R.14
Mason, A.M.15
Mitchell, C.16
Patel, C.17
Patel, V.K.18
Senger, S.19
Shah, G.P.20
Weston, H.E.21
Whitworth, C.22
Young, R.J.23
more..
-
41
-
-
33749256087
-
Arylsulfonamides: A Study of the Relationship between Activity and Conformational Preferences for a Series of Factor Xa Inhibitors
-
Senger, S.; Convery, M. A.; Chan, C.; Watson, N. S. Arylsulfonamides: A Study of the Relationship between Activity and Conformational Preferences for a Series of Factor Xa Inhibitors Bioorg. Med. Chem. Lett. 2006, 16, 5731-5735 10.1016/j.bmcl.2006.08.092
-
(2006)
Bioorg. Med. Chem. Lett.
, vol.16
, pp. 5731-5735
-
-
Senger, S.1
Convery, M.A.2
Chan, C.3
Watson, N.S.4
-
42
-
-
33750497430
-
Structure- and Property-Based Design of Factor Xa Inhibitors: Pyrrolidin-2-Ones with Acyclic Alanyl Amides as P4 Motifs
-
Young, R. J.; Campbell, M.; Borthwick, A. D.; Brown, D.; Burns-Kurtis, C. L.; Chan, C.; Convery, M. A.; Crowe, M. C.; Dayal, S.; Diallo, H.; Kelly, H. A.; Paul King, N.; Kleanthous, S.; Mason, A. M.; Mordaunt, J. E.; Patel, C.; Pateman, A. J.; Senger, S.; Shah, G. P.; Smith, P. W.; Watson, N. S.; Weston, H. E.; Zhou, P. Structure- and Property-Based Design of Factor Xa Inhibitors: Pyrrolidin-2-Ones with Acyclic Alanyl Amides as P4 Motifs Bioorg. Med. Chem. Lett. 2006, 16, 5953-5957 10.1016/j.bmcl.2006.09.001
-
(2006)
Bioorg. Med. Chem. Lett.
, vol.16
, pp. 5953-5957
-
-
Young, R.J.1
Campbell, M.2
Borthwick, A.D.3
Brown, D.4
Burns-Kurtis, C.L.5
Chan, C.6
Convery, M.A.7
Crowe, M.C.8
Dayal, S.9
Diallo, H.10
Kelly, H.A.11
Paul King, N.12
Kleanthous, S.13
Mason, A.M.14
Mordaunt, J.E.15
Patel, C.16
Pateman, A.J.17
Senger, S.18
Shah, G.P.19
Smith, P.W.20
Watson, N.S.21
Weston, H.E.22
Zhou, P.23
more..
-
43
-
-
34147108048
-
Factor Xa Inhibitors: S1 Binding Interactions of a Series of N-{(3S)-1-[(1S)-1-Methyl-2-Morpholin-4-Yl-2-Oxoethyl]-2-Oxopyrrolidin-3-Yl}sulfonamides
-
Chan, C.; Borthwick, A. D.; Brown, D.; Burns-Kurtis, C. L.; Campbell, M.; Chaudry, L.; Chung, C.; Convery, M. A.; Hamblin, J. N.; Johnstone, L.; Kelly, H. A.; Kleanthous, S.; Patikis, A.; Patel, C.; Pateman, A. J.; Senger, S.; Shah, G. P.; Toomey, J. R.; Watson, N. S.; Weston, H. E.; Whitworth, C.; Young, R. J.; Zhou, P. Factor Xa Inhibitors: S1 Binding Interactions of a Series of N-{(3S)-1-[(1S)-1-Methyl-2-Morpholin-4-Yl-2-Oxoethyl]-2-Oxopyrrolidin-3-Yl}sulfonamides J. Med. Chem. 2007, 50, 1546-1557 10.1021/jm060870c
-
(2007)
J. Med. Chem.
, vol.50
, pp. 1546-1557
-
-
Chan, C.1
Borthwick, A.D.2
Brown, D.3
Burns-Kurtis, C.L.4
Campbell, M.5
Chaudry, L.6
Chung, C.7
Convery, M.A.8
Hamblin, J.N.9
Johnstone, L.10
Kelly, H.A.11
Kleanthous, S.12
Patikis, A.13
Patel, C.14
Pateman, A.J.15
Senger, S.16
Shah, G.P.17
Toomey, J.R.18
Watson, N.S.19
Weston, H.E.20
Whitworth, C.21
Young, R.J.22
Zhou, P.23
more..
-
44
-
-
34247333018
-
Selective and Dual Action Orally Active Inhibitors of Thrombin and Factor Xa
-
Young, R. J.; Brown, D.; Burns-Kurtis, C. L.; Chan, C.; Convery, M. A.; Hubbard, J. A.; Kelly, H. A.; Pateman, A. J.; Patikis, A.; Senger, S.; Shah, G. P.; Toomey, J. R.; Watson, N. S.; Zhou, P. Selective and Dual Action Orally Active Inhibitors of Thrombin and Factor Xa Bioorg. Med. Chem. Lett. 2007, 17, 2927-2930 10.1016/j.bmcl.2007.03.080
-
(2007)
Bioorg. Med. Chem. Lett.
, vol.17
, pp. 2927-2930
-
-
Young, R.J.1
Brown, D.2
Burns-Kurtis, C.L.3
Chan, C.4
Convery, M.A.5
Hubbard, J.A.6
Kelly, H.A.7
Pateman, A.J.8
Patikis, A.9
Senger, S.10
Shah, G.P.11
Toomey, J.R.12
Watson, N.S.13
Zhou, P.14
-
45
-
-
34247345822
-
Sulfonamide-Related Conformational Effects and Their Importance in Structure-Based Design
-
Senger, S.; Chan, C.; Convery, M. A.; Hubbard, J. A.; Shah, G. P.; Watson, N. S.; Young, R. J. Sulfonamide-Related Conformational Effects and Their Importance in Structure-Based Design Bioorg. Med. Chem. Lett. 2007, 17, 2931-2934 10.1016/j.bmcl.2007.02.034
-
(2007)
Bioorg. Med. Chem. Lett.
, vol.17
, pp. 2931-2934
-
-
Senger, S.1
Chan, C.2
Convery, M.A.3
Hubbard, J.A.4
Shah, G.P.5
Watson, N.S.6
Young, R.J.7
-
46
-
-
37549065150
-
Structure and Property Based Design of Factor Xa Inhibitors: Pyrrolidin-2-Ones with Biaryl P4 Motifs
-
Young, R. J.; Borthwick, A. D.; Brown, D.; Burns-Kurtis, C. L.; Campbell, M.; Chan, C.; Charbaut, M.; Chung, C.; Convery, M. A.; Kelly, H. A.; Paul King, N.; Kleanthous, S.; Mason, A. M.; Pateman, A. J.; Patikis, A. N.; Pinto, I. L.; Pollard, D. R.; Senger, S.; Shah, G. P.; Toomey, J. R.; Watson, N. S.; Weston, H. E. Structure and Property Based Design of Factor Xa Inhibitors: Pyrrolidin-2-Ones with Biaryl P4 Motifs Bioorg. Med. Chem. Lett. 2008, 18, 23-27 10.1016/j.bmcl.2007.11.023
-
(2008)
Bioorg. Med. Chem. Lett.
, vol.18
, pp. 23-27
-
-
Young, R.J.1
Borthwick, A.D.2
Brown, D.3
Burns-Kurtis, C.L.4
Campbell, M.5
Chan, C.6
Charbaut, M.7
Chung, C.8
Convery, M.A.9
Kelly, H.A.10
Paul King, N.11
Kleanthous, S.12
Mason, A.M.13
Pateman, A.J.14
Patikis, A.N.15
Pinto, I.L.16
Pollard, D.R.17
Senger, S.18
Shah, G.P.19
Toomey, J.R.20
Watson, N.S.21
Weston, H.E.22
more..
-
47
-
-
37549040576
-
Structure and Property Based Design of Factor Xa Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic Heterocyclic Motifs
-
Young, R. J.; Borthwick, A. D.; Brown, D.; Burns-Kurtis, C. L.; Campbell, M.; Chan, C.; Charbaut, M.; Convery, M. A.; Diallo, H.; Hortense, E.; Irving, W. R.; Kelly, H. A.; King, N. P.; Kleanthous, S.; Mason, A. M.; Pateman, A. J.; Patikis, A. N.; Pinto, I. L.; Pollard, D. R.; Senger, S.; Shah, G. P.; Toomey, J. R.; Watson, N. S.; Weston, H. E.; Zhou, P. Structure and Property Based Design of Factor Xa Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic Heterocyclic Motifs Bioorg. Med. Chem. Lett. 2008, 18, 28-33 10.1016/j.bmcl.2007.11.019
-
(2008)
Bioorg. Med. Chem. Lett.
, vol.18
, pp. 28-33
-
-
Young, R.J.1
Borthwick, A.D.2
Brown, D.3
Burns-Kurtis, C.L.4
Campbell, M.5
Chan, C.6
Charbaut, M.7
Convery, M.A.8
Diallo, H.9
Hortense, E.10
Irving, W.R.11
Kelly, H.A.12
King, N.P.13
Kleanthous, S.14
Mason, A.M.15
Pateman, A.J.16
Patikis, A.N.17
Pinto, I.L.18
Pollard, D.R.19
Senger, S.20
Shah, G.P.21
Toomey, J.R.22
Watson, N.S.23
Weston, H.E.24
Zhou, P.25
more..
-
48
-
-
55949085850
-
Antithrombotic Potential of GW813893: A Novel, Orally Active, Active-Site Directed Factor Xa Inhibitor
-
Abboud, M. A.; Needle, S. J.; Burns-Kurtis, C. L.; Valocik, R. E.; Koster, P. F.; Amour, A. J.; Chan, C.; Brown, D.; Chaudry, L.; Zhou, P.; Patikis, A.; Patel, C.; Pateman, A. J.; Young, R. J.; Watson, N. S.; Toomey, J. R. Antithrombotic Potential of GW813893: A Novel, Orally Active, Active-Site Directed Factor Xa Inhibitor J. Cardiovasc. Pharmacol. 2008, 52, 66-71 10.1097/FJC.0b013e31817e9b9e
-
(2008)
J. Cardiovasc. Pharmacol.
, vol.52
, pp. 66-71
-
-
Abboud, M.A.1
Needle, S.J.2
Burns-Kurtis, C.L.3
Valocik, R.E.4
Koster, P.F.5
Amour, A.J.6
Chan, C.7
Brown, D.8
Chaudry, L.9
Zhou, P.10
Patikis, A.11
Patel, C.12
Pateman, A.J.13
Young, R.J.14
Watson, N.S.15
Toomey, J.R.16
-
49
-
-
72249096436
-
Structure and Property Based Design of Factor Xa Inhibitors: Pyrrolidin-2-Ones with Monoaryl P4 Motifs
-
Kleanthous, S.; Borthwick, A. D.; Brown, D.; Burns-Kurtis, C. L.; Campbell, M.; Chaudry, L.; Chan, C.; Clarte, M.-O.; Convery, M. A.; Harling, J. D.; Hortense, E.; Irving, W. R.; Irvine, S.; Pateman, A. J.; Patikis, A. N.; Pinto, I. L.; Pollard, D. R.; Roethka, T. J.; Senger, S.; Shah, G. P.; Stelman, G. J.; Toomey, J. R.; Watson, N. S.; West, R. I.; Whittaker, C.; Zhou, P.; Young, R. J. Structure and Property Based Design of Factor Xa Inhibitors: Pyrrolidin-2-Ones with Monoaryl P4 Motifs Bioorg. Med. Chem. Lett. 2010, 20, 618-622 10.1016/j.bmcl.2009.11.077
-
(2010)
Bioorg. Med. Chem. Lett.
, vol.20
, pp. 618-622
-
-
Kleanthous, S.1
Borthwick, A.D.2
Brown, D.3
Burns-Kurtis, C.L.4
Campbell, M.5
Chaudry, L.6
Chan, C.7
Clarte, M.-O.8
Convery, M.A.9
Harling, J.D.10
Hortense, E.11
Irving, W.R.12
Irvine, S.13
Pateman, A.J.14
Patikis, A.N.15
Pinto, I.L.16
Pollard, D.R.17
Roethka, T.J.18
Senger, S.19
Shah, G.P.20
Stelman, G.J.21
Toomey, J.R.22
Watson, N.S.23
West, R.I.24
Whittaker, C.25
Zhou, P.26
Young, R.J.27
more..
-
50
-
-
79952362136
-
Structure and Property Based Design of Factor Xa Inhibitors: Pyrrolidin-2-Ones with Aminoindane and Phenylpyrrolidine P4 Motifs
-
Young, R. J.; Adams, C.; Blows, M.; Brown, D.; Burns-Kurtis, C. L.; Chan, C.; Chaudry, L.; Convery, M. A.; Davies, D. E.; Exall, A. M.; Foster, G.; Harling, J. D.; Hortense, E.; Irvine, S.; Irving, W. R.; Jackson, S.; Kleanthous, S.; Pateman, A. J.; Patikis, A. N.; Roethka, T. J.; Senger, S.; Stelman, G. J.; Toomey, J. R.; West, R. I.; Whittaker, C.; Zhou, P.; Watson, N. S. Structure and Property Based Design of Factor Xa Inhibitors: Pyrrolidin-2-Ones with Aminoindane and Phenylpyrrolidine P4 Motifs Bioorg. Med. Chem. Lett. 2011, 21, 1582-1587 10.1016/j.bmcl.2011.01.131
-
(2011)
Bioorg. Med. Chem. Lett.
, vol.21
, pp. 1582-1587
-
-
Young, R.J.1
Adams, C.2
Blows, M.3
Brown, D.4
Burns-Kurtis, C.L.5
Chan, C.6
Chaudry, L.7
Convery, M.A.8
Davies, D.E.9
Exall, A.M.10
Foster, G.11
Harling, J.D.12
Hortense, E.13
Irvine, S.14
Irving, W.R.15
Jackson, S.16
Kleanthous, S.17
Pateman, A.J.18
Patikis, A.N.19
Roethka, T.J.20
Senger, S.21
Stelman, G.J.22
Toomey, J.R.23
West, R.I.24
Whittaker, C.25
Zhou, P.26
Watson, N.S.27
more..
-
51
-
-
79952362409
-
The Discovery of Potent and Long-Acting Oral Factor Xa Inhibitors with Tetrahydroisoquinoline and Benzazepine P4 Motifs
-
Watson, N. S.; Adams, C.; Belton, D.; Brown, D.; Burns-Kurtis, C. L.; Chaudry, L.; Chan, C.; Convery, M. A.; Davies, D. E.; Exall, A. M.; Harling, J. D.; Irvine, S.; Irving, W. R.; Kleanthous, S.; McLay, I. M.; Pateman, A. J.; Patikis, A. N.; Roethke, T. J.; Senger, S.; Stelman, G. J.; Toomey, J. R.; West, R. I.; Whittaker, C.; Zhou, P.; Young, R. J. The Discovery of Potent and Long-Acting Oral Factor Xa Inhibitors with Tetrahydroisoquinoline and Benzazepine P4 Motifs Bioorg. Med. Chem. Lett. 2011, 21, 1588-1592 10.1016/j.bmcl.2011.01.129
-
(2011)
Bioorg. Med. Chem. Lett.
, vol.21
, pp. 1588-1592
-
-
Watson, N.S.1
Adams, C.2
Belton, D.3
Brown, D.4
Burns-Kurtis, C.L.5
Chaudry, L.6
Chan, C.7
Convery, M.A.8
Davies, D.E.9
Exall, A.M.10
Harling, J.D.11
Irvine, S.12
Irving, W.R.13
Kleanthous, S.14
McLay, I.M.15
Pateman, A.J.16
Patikis, A.N.17
Roethke, T.J.18
Senger, S.19
Stelman, G.J.20
Toomey, J.R.21
West, R.I.22
Whittaker, C.23
Zhou, P.24
Young, R.J.25
more..
-
52
-
-
84883260321
-
Check Your Confidence: Size Really Does Matter
-
Carlson, H. A. Check Your Confidence: Size Really Does Matter J. Chem. Inf. Model. 2013, 53, 1837-1841 10.1021/ci4004249
-
(2013)
J. Chem. Inf. Model.
, vol.53
, pp. 1837-1841
-
-
Carlson, H.A.1
-
53
-
-
84976495470
-
-
Chemical Computing Group, Inc. Montreal, QC, Canada, 2011
-
MOE2011.10; Chemical Computing Group, Inc.: Montreal, QC, Canada, 2011.
-
MOE2011.10
-
-
-
54
-
-
84928550315
-
DOCK 6: Impact of New Features and Current Docking Performance
-
Allen, W. J.; Balius, T. E.; Mukherjee, S.; Brozell, S. R.; Moustakas, D. T.; Lang, P. T.; Case, D. A.; Kuntz, I. D.; Rizzo, R. C. DOCK 6: Impact of New Features and Current Docking Performance J. Comput. Chem. 2015, 36, 1132-1156 10.1002/jcc.23905
-
(2015)
J. Comput. Chem.
, vol.36
, pp. 1132-1156
-
-
Allen, W.J.1
Balius, T.E.2
Mukherjee, S.3
Brozell, S.R.4
Moustakas, D.T.5
Lang, P.T.6
Case, D.A.7
Kuntz, I.D.8
Rizzo, R.C.9
-
55
-
-
84976500586
-
-
Chemical Computing Group, Inc. Montreal, QC, Canada, 2013
-
MOE2013.08; Chemical Computing Group, Inc.: Montreal, QC, Canada, 2013.
-
MOE2013.08
-
-
-
56
-
-
84976496589
-
-
OpenEye Scientific Software, Inc. 2007
-
Babel, Version 3.3; OpenEye Scientific Software, Inc. 2007.
-
Babel, Version 3.3
-
-
-
57
-
-
84976521130
-
-
SAS Institute, Inc. Cary, NC
-
JMP Pro 10; SAS Institute, Inc.: Cary, NC.
-
JMP Pro 10
-
-
-
58
-
-
0002532939
-
On the "probable Error" of a Coefficient of Correlation Deduced from a Small Sample
-
Fisher, R. A. On the "Probable Error" of a Coefficient of Correlation Deduced from a Small Sample Metron 1921, 1, 3-31
-
(1921)
Metron
, vol.1
, pp. 3-31
-
-
Fisher, R.A.1
-
59
-
-
0034147705
-
Sample Size Requirements for Estimating Pearson, Kendall and Spearman Correlations
-
Bonett, D. G.; Wright, T. A. Sample Size Requirements for Estimating Pearson, Kendall and Spearman Correlations Psychometrika 2000, 65, 23-28 10.1007/BF02294183
-
(2000)
Psychometrika
, vol.65
, pp. 23-28
-
-
Bonett, D.G.1
Wright, T.A.2
-
60
-
-
84876691506
-
Systematic and Efficient Side Chain Optimization for Molecular Docking Using a Cheapest-Path Procedure
-
Schumann, M.; Armen, R. S. Systematic and Efficient Side Chain Optimization for Molecular Docking Using a Cheapest-Path Procedure J. Comput. Chem. 2013, 34, 1258-1269 10.1002/jcc.23251
-
(2013)
J. Comput. Chem.
, vol.34
, pp. 1258-1269
-
-
Schumann, M.1
Armen, R.S.2
-
61
-
-
70349932423
-
AutoDock4 and AutoDockTools4: Automated Docking with Selective Receptor Flexibility
-
Morris, G. M.; Huey, R.; Lindstrom, W.; Sanner, M. F.; Belew, R. K.; Goodsell, D. S.; Olson, A. J. AutoDock4 and AutoDockTools4: Automated Docking with Selective Receptor Flexibility J. Comput. Chem. 2009, 30, 2785-2791 10.1002/jcc.21256
-
(2009)
J. Comput. Chem.
, vol.30
, pp. 2785-2791
-
-
Morris, G.M.1
Huey, R.2
Lindstrom, W.3
Sanner, M.F.4
Belew, R.K.5
Goodsell, D.S.6
Olson, A.J.7
-
62
-
-
20444422149
-
The PDBbind Database: Methodologies and Updates
-
Wang, R.; Fang, X.; Lu, Y.; Yang, C.-Y.; Wang, S. The PDBbind Database: Methodologies and Updates J. Med. Chem. 2005, 48, 4111-4119 10.1021/jm048957q
-
(2005)
J. Med. Chem.
, vol.48
, pp. 4111-4119
-
-
Wang, R.1
Fang, X.2
Lu, Y.3
Yang, C.-Y.4
Wang, S.5
-
63
-
-
84976481255
-
-
OpenEye Scientific Software, Inc. Santa Fe, NM, 2011
-
SZMAP, 1.0.0; OpenEye Scientific Software, Inc.: Santa Fe, NM, 2011.
-
SZMAP, 1.0.0
-
-
-
64
-
-
84976488321
-
-
OpenEye Scientific Software, Santa Fe, NM
-
SZYBKI 1.8.0.2; OpenEye Scientific Software, Santa Fe, NM, 2016.
-
(2016)
SZYBKI 1.8.0.2
-
-
-
65
-
-
34547673017
-
Comparison of Topological, Shape, and Docking Methods in Virtual Screening
-
McGaughey, G. B.; Sheridan, R. P.; Bayly, C. I.; Culberson, J. C.; Kreatsoulas, C.; Lindsley, S.; Maiorov, V.; Truchon, J.-F.; Cornell, W. D. Comparison of Topological, Shape, and Docking Methods in Virtual Screening J. Chem. Inf. Model. 2007, 47, 1504-1519 10.1021/ci700052x
-
(2007)
J. Chem. Inf. Model.
, vol.47
, pp. 1504-1519
-
-
McGaughey, G.B.1
Sheridan, R.P.2
Bayly, C.I.3
Culberson, J.C.4
Kreatsoulas, C.5
Lindsley, S.6
Maiorov, V.7
Truchon, J.-F.8
Cornell, W.D.9
-
66
-
-
84867328344
-
FRED and HYBRID Docking Performance on Standardized Datasets
-
McGann, M. FRED and HYBRID Docking Performance on Standardized Datasets J. Comput.-Aided Mol. Des. 2012, 26, 897-906 10.1007/s10822-012-9584-8
-
(2012)
J. Comput.-Aided Mol. Des.
, vol.26
, pp. 897-906
-
-
McGann, M.1
-
67
-
-
0035470889
-
Greedy Function Approximation: A Gradient Boosting Machine
-
Friedman, J. H. Greedy Function Approximation: A Gradient Boosting Machine Ann. Stat. 2001, 29, 1189-1232 10.1214/aos/1013203451
-
(2001)
Ann. Stat.
, vol.29
, pp. 1189-1232
-
-
Friedman, J.H.1
-
68
-
-
84873840381
-
Boosted Decision Trees, a Powerful Event Classifier
-
Byron, P.; Yang, H.; Zhub, J. Boosted Decision Trees, a Powerful Event Classifier Stat. Probl. Part. Phys. Astrophys. Cosmol. Proc. PHYSTAT05 2006, 40, 139 10.1142/9781860948985-0029
-
(2006)
Stat. Probl. Part. Phys. Astrophys. Cosmol. Proc. PHYSTAT05
, vol.40
, pp. 139
-
-
Byron, P.1
Yang, H.2
Zhub, J.3
-
69
-
-
77952825581
-
A Machine Learning Approach to Predicting Protein-ligand Binding Affinity with Applications to Molecular Docking
-
Ballester, P. J.; Mitchell, J. B. A Machine Learning Approach to Predicting Protein-ligand Binding Affinity with Applications to Molecular Docking Bioinformatics 2010, 26, 1169-1175 10.1093/bioinformatics/btq112
-
(2010)
Bioinformatics
, vol.26
, pp. 1169-1175
-
-
Ballester, P.J.1
Mitchell, J.B.2
-
70
-
-
80053324958
-
SHAFTS: A Hybrid Approach for 3D Molecular Similarity Calculation. 1. Method and Assessment of Virtual Screening
-
Liu, X.; Jiang, H.; Li, H. SHAFTS: A Hybrid Approach for 3D Molecular Similarity Calculation. 1. Method and Assessment of Virtual Screening J. Chem. Inf. Model. 2011, 51, 2372-2385 10.1021/ci200060s
-
(2011)
J. Chem. Inf. Model.
, vol.51
, pp. 2372-2385
-
-
Liu, X.1
Jiang, H.2
Li, H.3
-
71
-
-
79959746008
-
Pharmer: Efficient and Exact Pharmacophore Search
-
Koes, D. R.; Camacho, C. J. Pharmer: Efficient and Exact Pharmacophore Search J. Chem. Inf. Model. 2011, 51, 1307-1314 10.1021/ci200097m
-
(2011)
J. Chem. Inf. Model.
, vol.51
, pp. 1307-1314
-
-
Koes, D.R.1
Camacho, C.J.2
-
72
-
-
84976394415
-
Integration of Ligand and Structure Based Approaches for CSAR-2014
-
Prathipati, P.; Mizuguchi, K. Integration of Ligand and Structure Based Approaches for CSAR-2014 J. Chem. Inf. Model. 2015, 10.1021/acs.jcim.5b00477
-
(2015)
J. Chem. Inf. Model.
-
-
Prathipati, P.1
Mizuguchi, K.2
-
73
-
-
0034645763
-
Knowledge-Based Scoring Function to Predict Protein-Ligand interactions1
-
Gohlke, H.; Hendlich, M.; Klebe, G. Knowledge-Based Scoring Function to Predict Protein-Ligand interactions1 J. Mol. Biol. 2000, 295, 337-356 10.1006/jmbi.1999.3371
-
(2000)
J. Mol. Biol.
, vol.295
, pp. 337-356
-
-
Gohlke, H.1
Hendlich, M.2
Klebe, G.3
-
74
-
-
0036022960
-
Further Development and Validation of Empirical Scoring Functions for Structure-Based Binding Affinity Prediction
-
Wang, R.; Lai, L.; Wang, S. Further Development and Validation of Empirical Scoring Functions for Structure-Based Binding Affinity Prediction J. Comput.-Aided Mol. Des. 2002, 16, 11-26 10.1023/A:1016357811882
-
(2002)
J. Comput.-Aided Mol. Des.
, vol.16
, pp. 11-26
-
-
Wang, R.1
Lai, L.2
Wang, S.3
-
75
-
-
52049118327
-
MedusaScore: An Accurate Force Field-Based Scoring Function for Virtual Drug Screening
-
Yin, S.; Biedermannova, L.; Vondrasek, J.; Dokholyan, N. V. MedusaScore: An Accurate Force Field-Based Scoring Function for Virtual Drug Screening J. Chem. Inf. Model. 2008, 48, 1656-1662 10.1021/ci8001167
-
(2008)
J. Chem. Inf. Model.
, vol.48
, pp. 1656-1662
-
-
Yin, S.1
Biedermannova, L.2
Vondrasek, J.3
Dokholyan, N.V.4
-
76
-
-
84976394935
-
Predicting Binding Poses and Affinities in the CSAR 2013-2014 Docking Exercises Using the Knowledge-Based Convex-PL Potential
-
Grudinin, S.; Popov, P.; Neveu, E.; Cheremovskiy, G. Predicting Binding Poses and Affinities in the CSAR 2013-2014 Docking Exercises Using the Knowledge-Based Convex-PL Potential J. Chem. Inf. Model. 2015, 10.1021/acs.jcim.5b00339
-
(2015)
J. Chem. Inf. Model.
-
-
Grudinin, S.1
Popov, P.2
Neveu, E.3
Cheremovskiy, G.4
-
77
-
-
84976351167
-
Evaluation of the Wilma-SIE Virtual Screening Method in Community Structure-Activity Resource 2013 and 2014 Blind Challenges
-
Hogues, H.; Sulea, T.; Purisima, E. O. Evaluation of the Wilma-SIE Virtual Screening Method in Community Structure-Activity Resource 2013 and 2014 Blind Challenges J. Chem. Inf. Model. 2015, 10.1021/acs.jcim.5b00278
-
(2015)
J. Chem. Inf. Model.
-
-
Hogues, H.1
Sulea, T.2
Purisima, E.O.3
-
78
-
-
84976383871
-
Blind Pose Prediction, Scoring, and Affinity Ranking of the CSAR 2014 Dataset
-
Martiny, V. Y.; Martz, F.; Selwa, E.; Iorga, B. I. Blind Pose Prediction, Scoring, and Affinity Ranking of the CSAR 2014 Dataset J. Chem. Inf. Model. 2015, 10.1021/acs.jcim.5b00337
-
(2015)
J. Chem. Inf. Model.
-
-
Martiny, V.Y.1
Martz, F.2
Selwa, E.3
Iorga, B.I.4
-
79
-
-
84976420300
-
CSAR Benchmark of Flexible MedusaDock in Affinity Prediction and Nativelike Binding Pose Selection
-
Nedumpully-Govindan, P.; Jemec, D. B.; Ding, F. CSAR Benchmark of Flexible MedusaDock in Affinity Prediction and Nativelike Binding Pose Selection J. Chem. Inf. Model. 2015, 10.1021/acs.jcim.5b00303
-
(2015)
J. Chem. Inf. Model.
-
-
Nedumpully-Govindan, P.1
Jemec, D.B.2
Ding, F.3
-
80
-
-
84976406317
-
Evaluation of GalaxyDock Based on the Community Structure-Activity Resource 2013 and 2014 Benchmark Studies
-
Shin, W.-H.; Lee, G. R.; Seok, C. Evaluation of GalaxyDock Based on the Community Structure-Activity Resource 2013 and 2014 Benchmark Studies J. Chem. Inf. Model. 2015, 10.1021/acs.jcim.5b00309
-
(2015)
J. Chem. Inf. Model.
-
-
Shin, W.-H.1
Lee, G.R.2
Seok, C.3
-
81
-
-
84976482811
-
Iterative Knowledge-Based Scoring Functions Derived from Rigid and Flexible Decoy Structures: Evaluation with the 2013 and 2014 CSAR Benchmarks
-
Yan, C.; Grinter, S. Z.; Merideth, B. R.; Ma, Z.; Zou, X. Iterative Knowledge-Based Scoring Functions Derived from Rigid and Flexible Decoy Structures: Evaluation with the 2013 and 2014 CSAR Benchmarks J. Chem. Inf. Model. 2015, 10.1021/acs.jcim.5b00504
-
(2015)
J. Chem. Inf. Model.
-
-
Yan, C.1
Grinter, S.Z.2
Merideth, B.R.3
Ma, Z.4
Zou, X.5
-
82
-
-
84976475543
-
Combined Approach of Patch-Surfer and PL-PatchSurfer for Protein-Ligand Binding Prediction in CSAR 2013 and 2014
-
Zhu, X.; Shin, W.-H.; Kim, H.; Kihara, D. Combined Approach of Patch-Surfer and PL-PatchSurfer for Protein-Ligand Binding Prediction in CSAR 2013 and 2014 J. Chem. Inf. Model. 2015, 10.1021/acs.jcim.5b00625
-
(2015)
J. Chem. Inf. Model.
-
-
Zhu, X.1
Shin, W.-H.2
Kim, H.3
Kihara, D.4
-
83
-
-
20644449471
-
Modification of the Generalized Born Model Suitable for Macromolecules
-
Onufriev, A.; Bashford, D.; Case, D. A. Modification of the Generalized Born Model Suitable for Macromolecules J. Phys. Chem. B 2000, 104, 3712-3720 10.1021/jp994072s
-
(2000)
J. Phys. Chem. B
, vol.104
, pp. 3712-3720
-
-
Onufriev, A.1
Bashford, D.2
Case, D.A.3
-
84
-
-
70349100806
-
Theory of Free Energy and Entropy in Noncovalent Binding
-
Zhou, H.-X.; Gilson, M. K. Theory of Free Energy and Entropy in Noncovalent Binding Chem. Rev. 2009, 109, 4092-4107 10.1021/cr800551w
-
(2009)
Chem. Rev.
, vol.109
, pp. 4092-4107
-
-
Zhou, H.-X.1
Gilson, M.K.2
-
85
-
-
80053334687
-
Solvated Interaction Energy (SIE) for Scoring Protein-Ligand Binding Affinities. 2. Benchmark in the CSAR-2010 Scoring Exercise
-
Sulea, T.; Cui, Q.; Purisima, E. O. Solvated Interaction Energy (SIE) for Scoring Protein-Ligand Binding Affinities. 2. Benchmark in the CSAR-2010 Scoring Exercise J. Chem. Inf. Model. 2011, 51, 2066-2081 10.1021/ci2000242
-
(2011)
J. Chem. Inf. Model.
, vol.51
, pp. 2066-2081
-
-
Sulea, T.1
Cui, Q.2
Purisima, E.O.3
-
86
-
-
0001509942
-
Prediction of Physicochemical Parameters by Atomic Contributions
-
Wildman, S. A.; Crippen, G. M. Prediction of Physicochemical Parameters by Atomic Contributions J. Chem. Inf. Comput. Sci. 1999, 39, 868-873 10.1021/ci990307l
-
(1999)
J. Chem. Inf. Comput. Sci.
, vol.39
, pp. 868-873
-
-
Wildman, S.A.1
Crippen, G.M.2
-
87
-
-
84862276184
-
The Experimental Uncertainty of Heterogeneous Public Ki Data
-
Kramer, C.; Kalliokoski, T.; Gedeck, P.; Vulpetti, A. The Experimental Uncertainty of Heterogeneous Public Ki Data J. Med. Chem. 2012, 55, 5165-5173 10.1021/jm300131x
-
(2012)
J. Med. Chem.
, vol.55
, pp. 5165-5173
-
-
Kramer, C.1
Kalliokoski, T.2
Gedeck, P.3
Vulpetti, A.4
-
88
-
-
80053303462
-
Three Descriptor Model Sets a High Standard for the CSAR-NRC HiQ Benchmark
-
Kramer, C.; Gedeck, P. Three Descriptor Model Sets a High Standard for the CSAR-NRC HiQ Benchmark J. Chem. Inf. Model. 2011, 51, 2139-2145 10.1021/ci200030h
-
(2011)
J. Chem. Inf. Model.
, vol.51
, pp. 2139-2145
-
-
Kramer, C.1
Gedeck, P.2
-
89
-
-
84872223600
-
QSARs, Data and Error in the Modern Age of Drug Discovery
-
Kramer, C.; Lewis, R. QSARs, Data and Error in the Modern Age of Drug Discovery Curr. Top. Med. Chem. 2012, 12, 1896-1902 10.2174/156802612804547380
-
(2012)
Curr. Top. Med. Chem.
, vol.12
, pp. 1896-1902
-
-
Kramer, C.1
Lewis, R.2
-
90
-
-
84876174816
-
Comparability of Mixed IC50 Data-a Statistical Analysis
-
Kalliokoski, T.; Kramer, C.; Vulpetti, A.; Gedeck, P. Comparability of Mixed IC50 Data-a Statistical Analysis PLoS One 2013, 8, e61007 10.1371/journal.pone.0061007
-
(2013)
PLoS One
, vol.8
, pp. e61007
-
-
Kalliokoski, T.1
Kramer, C.2
Vulpetti, A.3
Gedeck, P.4
-
91
-
-
84865271039
-
Variability in Docking Success Rates due to Dataset Preparation
-
Corbeil, C. R.; Williams, C. I.; Labute, P. Variability in Docking Success Rates due to Dataset Preparation J. Comput.-Aided Mol. Des. 2012, 26, 775-786 10.1007/s10822-012-9570-1
-
(2012)
J. Comput.-Aided Mol. Des.
, vol.26
, pp. 775-786
-
-
Corbeil, C.R.1
Williams, C.I.2
Labute, P.3
-
92
-
-
84855945133
-
Rosetta Ligand Docking with Flexible XML Protocols
-
Lemmon, G.; Meiler, J. Rosetta Ligand Docking with Flexible XML Protocols Methods Mol. Biol. 2012, 819, 143-155 10.1007/978-1-61779-465-0-10
-
(2012)
Methods Mol. Biol.
, vol.819
, pp. 143-155
-
-
Lemmon, G.1
Meiler, J.2
-
93
-
-
78650905964
-
Rosetta3: An Object-Oriented Software Suite for the Simulation and Design of Macromolecules
-
Leaver-Fay, A.; Tyka, M.; Lewis, S. M.; Lange, O. F.; Thompson, J.; Jacak, R.; Kaufman, K.; Renfrew, P. D.; Smith, C. A.; Sheffler, W.; Davis, I. W.; Cooper, S.; Treuille, A.; Mandell, D. J.; Richter, F.; Ban, Y.-E. A.; Fleishman, S. J.; Corn, J. E.; Kim, D. E.; Lyskov, S.; Berrondo, M.; Mentzer, S.; Popović, Z.; Havranek, J. J.; Karanicolas, J.; Das, R.; Meiler, J.; Kortemme, T.; Gray, J. J.; Kuhlman, B.; Baker, D.; Bradley, P. Rosetta3: An Object-Oriented Software Suite for the Simulation and Design of Macromolecules Methods Enzymol. 2011, 487, 545-574 10.1016/B978-0-12-381270-4.00019-6
-
(2011)
Methods Enzymol.
, vol.487
, pp. 545-574
-
-
Leaver-Fay, A.1
Tyka, M.2
Lewis, S.M.3
Lange, O.F.4
Thompson, J.5
Jacak, R.6
Kaufman, K.7
Renfrew, P.D.8
Smith, C.A.9
Sheffler, W.10
Davis, I.W.11
Cooper, S.12
Treuille, A.13
Mandell, D.J.14
Richter, F.15
Ban, Y.-E.A.16
Fleishman, S.J.17
Corn, J.E.18
Kim, D.E.19
Lyskov, S.20
Berrondo, M.21
Mentzer, S.22
Popović, Z.23
Havranek, J.J.24
Karanicolas, J.25
Das, R.26
Meiler, J.27
Kortemme, T.28
Gray, J.J.29
Kuhlman, B.30
Baker, D.31
Bradley, P.32
more..
-
94
-
-
84976506818
-
Molecular Docking for Drug Discovery: Machine-Learning Approaches for Native Pose Prediction of Protein-Ligand Complexes
-
Formenti, E. Tagliaferri, R. Wit, E. Lecture Notes in Computer Science; Springer International Publishing
-
Ashtawy, H. M.; Mahapatra, N. R. Molecular Docking for Drug Discovery: Machine-Learning Approaches for Native Pose Prediction of Protein-Ligand Complexes. In Computational Intelligence Methods for Bioinformatics and Biostatistics; Formenti, E.; Tagliaferri, R.; Wit, E., Eds.; Lecture Notes in Computer Science; Springer International Publishing, 2013; pp 15-32.
-
(2013)
Computational Intelligence Methods for Bioinformatics and Biostatistics
, pp. 15-32
-
-
Ashtawy, H.M.1
Mahapatra, N.R.2
-
95
-
-
84859783507
-
Specificity Quantification of Biomolecular Recognition and Its Implication for Drug Discovery
-
Yan, Z.; Wang, J. Specificity Quantification of Biomolecular Recognition and Its Implication for Drug Discovery Sci. Rep. 2012, 2, 309 10.1038/srep00309
-
(2012)
Sci. Rep.
, vol.2
, pp. 309
-
-
Yan, Z.1
Wang, J.2
-
96
-
-
84871604119
-
GalaxyDock: Protein-Ligand Docking with Flexible Protein Side-Chains
-
Shin, W.-H.; Seok, C. GalaxyDock: Protein-Ligand Docking with Flexible Protein Side-Chains J. Chem. Inf. Model. 2012, 52, 3225-3232 10.1021/ci300342z
-
(2012)
J. Chem. Inf. Model.
, vol.52
, pp. 3225-3232
-
-
Shin, W.-H.1
Seok, C.2
-
97
-
-
13844320566
-
LigandScout: 3-D Pharmacophores Derived from Protein-Bound Ligands and Their Use as Virtual Screening Filters
-
Wolber, G.; Langer, T. LigandScout: 3-D Pharmacophores Derived from Protein-Bound Ligands and Their Use as Virtual Screening Filters J. Chem. Inf. Model. 2005, 45, 160-169 10.1021/ci049885e
-
(2005)
J. Chem. Inf. Model.
, vol.45
, pp. 160-169
-
-
Wolber, G.1
Langer, T.2
-
98
-
-
84883237038
-
Application of the Docking Program SOL for CSAR Benchmark
-
Sulimov, A. V.; Kutov, D. C.; Oferkin, I. V.; Katkova, E. V.; Sulimov, V. B. Application of the Docking Program SOL for CSAR Benchmark J. Chem. Inf. Model. 2013, 53, 1946-1956 10.1021/ci400094h
-
(2013)
J. Chem. Inf. Model.
, vol.53
, pp. 1946-1956
-
-
Sulimov, A.V.1
Kutov, D.C.2
Oferkin, I.V.3
Katkova, E.V.4
Sulimov, V.B.5
-
99
-
-
84902156497
-
Application of Molecular Modeling to Urokinase Inhibitors Development
-
Sulimov, V. B.; Katkova, E. V.; Oferkin, I. V.; Sulimov, A. V.; Romanov, A. N.; Roschin, A. I.; Beloglazova, I. B.; Plekhanova, O. S.; Tkachuk, V. A.; Sadovnichiy, V. A. Application of Molecular Modeling to Urokinase Inhibitors Development BioMed Res. Int. 2014, 2014, 1 10.1155/2014/625176
-
(2014)
BioMed Res. Int.
, vol.2014
, pp. 1
-
-
Sulimov, V.B.1
Katkova, E.V.2
Oferkin, I.V.3
Sulimov, A.V.4
Romanov, A.N.5
Roschin, A.I.6
Beloglazova, I.B.7
Plekhanova, O.S.8
Tkachuk, V.A.9
Sadovnichiy, V.A.10
-
100
-
-
12144289984
-
Glide: A New Approach for Rapid, Accurate Docking and Scoring. 1. Method and Assessment of Docking Accuracy
-
Friesner, R. A.; Banks, J. L.; Murphy, R. B.; Halgren, T. A.; Klicic, J. J.; Mainz, D. T.; Repasky, M. P.; Knoll, E. H.; Shelley, M.; Perry, J. K.; Shaw, D. E.; Francis, P.; Shenkin, P. S. Glide: A New Approach for Rapid, Accurate Docking and Scoring. 1. Method and Assessment of Docking Accuracy J. Med. Chem. 2004, 47, 1739-1749 10.1021/jm0306430
-
(2004)
J. Med. Chem.
, vol.47
, pp. 1739-1749
-
-
Friesner, R.A.1
Banks, J.L.2
Murphy, R.B.3
Halgren, T.A.4
Klicic, J.J.5
Mainz, D.T.6
Repasky, M.P.7
Knoll, E.H.8
Shelley, M.9
Perry, J.K.10
Shaw, D.E.11
Francis, P.12
Shenkin, P.S.13
-
101
-
-
1642310340
-
Glide: A New Approach for Rapid, Accurate Docking and Scoring. 2. Enrichment Factors in Database Screening
-
Halgren, T. A.; Murphy, R. B.; Friesner, R. A.; Beard, H. S.; Frye, L. L.; Pollard, W. T.; Banks, J. L. Glide: A New Approach for Rapid, Accurate Docking and Scoring. 2. Enrichment Factors in Database Screening J. Med. Chem. 2004, 47, 1750-1759 10.1021/jm030644s
-
(2004)
J. Med. Chem.
, vol.47
, pp. 1750-1759
-
-
Halgren, T.A.1
Murphy, R.B.2
Friesner, R.A.3
Beard, H.S.4
Frye, L.L.5
Pollard, W.T.6
Banks, J.L.7
-
102
-
-
84921629247
-
Target-Specific Native/Decoy Pose Classifier Improves the Accuracy of Ligand Ranking in the CSAR 2013 Benchmark
-
Fourches, D.; Politi, R.; Tropsha, A. Target-Specific Native/Decoy Pose Classifier Improves the Accuracy of Ligand Ranking in the CSAR 2013 Benchmark J. Chem. Inf. Model. 2015, 55, 63-71 10.1021/ci500519w
-
(2015)
J. Chem. Inf. Model.
, vol.55
, pp. 63-71
-
-
Fourches, D.1
Politi, R.2
Tropsha, A.3
-
103
-
-
84905496054
-
Development and Application of Site Mapping Methods for the Design of Glycosaminoglycans
-
Agostino, M.; Gandhi, N. S.; Mancera, R. L. Development and Application of Site Mapping Methods for the Design of Glycosaminoglycans Glycobiology 2014, 24, 840 10.1093/glycob/cwu045
-
(2014)
Glycobiology
, vol.24
, pp. 840
-
-
Agostino, M.1
Gandhi, N.S.2
Mancera, R.L.3
-
104
-
-
84885410322
-
Electrostatic Similarities between Protein and Small Molecule Ligands Facilitate the Design of Protein-Protein Interaction Inhibitors
-
Voet, A.; Berenger, F.; Zhang, K. Y. J. Electrostatic Similarities between Protein and Small Molecule Ligands Facilitate the Design of Protein-Protein Interaction Inhibitors PLoS One 2013, 8, e75762 10.1371/journal.pone.0075762
-
(2013)
PLoS One
, vol.8
, pp. e75762
-
-
Voet, A.1
Berenger, F.2
Zhang, K.Y.J.3
-
105
-
-
77952358441
-
Rapid Prediction of Solvation Free Energy. 2. the First-Shell Hydration (FiSH) Continuum Model
-
Corbeil, C. R.; Sulea, T.; Purisima, E. O. Rapid Prediction of Solvation Free Energy. 2. The First-Shell Hydration (FiSH) Continuum Model J. Chem. Theory Comput. 2010, 6, 1622-1637 10.1021/ct9006037
-
(2010)
J. Chem. Theory Comput.
, vol.6
, pp. 1622-1637
-
-
Corbeil, C.R.1
Sulea, T.2
Purisima, E.O.3
-
106
-
-
84921629247
-
Target-Specific Native/Decoy Pose Classifier Improves the Accuracy of Ligand Ranking in the CSAR 2013 Benchmark
-
Fourches, D.; Politi, R.; Tropsha, A. Target-Specific Native/Decoy Pose Classifier Improves the Accuracy of Ligand Ranking in the CSAR 2013 Benchmark J. Chem. Inf. Model. 2015, 55, 63-71 10.1021/ci500519w
-
(2015)
J. Chem. Inf. Model.
, vol.55
, pp. 63-71
-
-
Fourches, D.1
Politi, R.2
Tropsha, A.3
-
107
-
-
84876691506
-
Systematic and Efficient Side Chain Optimization for Molecular Docking Using a Cheapest-Path Procedure
-
Schumann, M.; Armen, R. S. Systematic and Efficient Side Chain Optimization for Molecular Docking Using a Cheapest-Path Procedure J. Comput. Chem. 2013, 34, 1258-1269 10.1002/jcc.23251
-
(2013)
J. Comput. Chem.
, vol.34
, pp. 1258-1269
-
-
Schumann, M.1
Armen, R.S.2
-
108
-
-
0031226772
-
Empirical Scoring Functions: I. the Development of a Fast Empirical Scoring Function to Estimate the Binding Affinity of Ligands in Receptor Complexes
-
Eldridge, M. D.; Murray, C. W.; Auton, T. R.; Paolini, G. V.; Mee, R. P. Empirical Scoring Functions: I. The Development of a Fast Empirical Scoring Function to Estimate the Binding Affinity of Ligands in Receptor Complexes J. Comput.-Aided Mol. Des. 1997, 11, 425-445 10.1023/A:1007996124545
-
(1997)
J. Comput.-Aided Mol. Des.
, vol.11
, pp. 425-445
-
-
Eldridge, M.D.1
Murray, C.W.2
Auton, T.R.3
Paolini, G.V.4
Mee, R.P.5
-
109
-
-
2942721004
-
Virtual Screening Using Protein-Ligand Docking: Avoiding Artificial Enrichment
-
Verdonk, M. L.; Berdini, V.; Hartshorn, M. J.; Mooij, W. T. M.; Murray, C. W.; Taylor, R. D.; Watson, P. Virtual Screening Using Protein-Ligand Docking: Avoiding Artificial Enrichment J. Chem. Inf. Comput. Sci. 2004, 44, 793-806 10.1021/ci034289q
-
(2004)
J. Chem. Inf. Comput. Sci.
, vol.44
, pp. 793-806
-
-
Verdonk, M.L.1
Berdini, V.2
Hartshorn, M.J.3
Mooij, W.T.M.4
Murray, C.W.5
Taylor, R.D.6
Watson, P.7
|