-
1
-
-
80053333972
-
CSAR Benchmark Exercise of 2010: Selection of the Protein-Ligand Complexes
-
Dunbar, J. B., Jr.; Smith, R. D.; Yang, C. Y.; Ung, P. M.; Lexa, K. W.; Khazanov, N. A.; Stuckey, J. A.; Wang, S.; Carlson, H. A. CSAR Benchmark Exercise of 2010: Selection of the Protein-Ligand Complexes J. Chem. Inf. Model. 2011, 51, 2036-2046 10.1021/ci200082t
-
(2011)
J. Chem. Inf. Model.
, vol.51
, pp. 2036-2046
-
-
Dunbar, J.B.1
Smith, R.D.2
Yang, C.Y.3
Ung, P.M.4
Lexa, K.W.5
Khazanov, N.A.6
Stuckey, J.A.7
Wang, S.8
Carlson, H.A.9
-
2
-
-
80053330055
-
CSAR Benchmark Exercise of 2010: Combined Evaluation Across All Submitted Scoring Functions
-
Smith, R. D.; Dunbar, J. B., Jr.; Ung, P. M.; Esposito, E. X.; Yang, C. Y.; Wang, S.; Carlson, H. A. CSAR Benchmark Exercise of 2010: Combined Evaluation Across All Submitted Scoring Functions J. Chem. Inf. Model. 2011, 51, 2115-2131 10.1021/ci200269q
-
(2011)
J. Chem. Inf. Model.
, vol.51
, pp. 2115-2131
-
-
Smith, R.D.1
Dunbar, J.B.2
Ung, P.M.3
Esposito, E.X.4
Yang, C.Y.5
Wang, S.6
Carlson, H.A.7
-
3
-
-
84883227058
-
CSAR Data Set Release 2012: Ligands, Affinities, Complexes, and Docking Decoys
-
Dunbar, J. B., Jr.; Smith, R. D.; Damm-Ganamet, K. L.; Ahmed, A.; Esposito, E. X.; Delproposto, J.; Chinnaswamy, K.; Kang, Y. N.; Kubish, G.; Gestwicki, J. E.; Stuckey, J. A.; Carlson, H. A. CSAR Data Set Release 2012: Ligands, Affinities, Complexes, and Docking Decoys J. Chem. Inf. Model. 2013, 53, 1842-1852 10.1021/ci4000486
-
(2013)
J. Chem. Inf. Model.
, vol.53
, pp. 1842-1852
-
-
Dunbar, J.B.1
Smith, R.D.2
Damm-Ganamet, K.L.3
Ahmed, A.4
Esposito, E.X.5
Delproposto, J.6
Chinnaswamy, K.7
Kang, Y.N.8
Kubish, G.9
Gestwicki, J.E.10
Stuckey, J.A.11
Carlson, H.A.12
-
4
-
-
84883209345
-
CSAR Benchmark Exercise 2011-2012: Evaluation of Results from Docking and Relative Ranking of Blinded Congeneric Series
-
Damm-Ganamet, K. L.; Smith, R. D.; Dunbar, J. B., Jr.; Stuckey, J. A.; Carlson, H. A. CSAR Benchmark Exercise 2011-2012: Evaluation of Results from Docking and Relative Ranking of Blinded Congeneric Series J. Chem. Inf. Model. 2013, 53, 1853-1870 10.1021/ci400025f
-
(2013)
J. Chem. Inf. Model.
, vol.53
, pp. 1853-1870
-
-
Damm-Ganamet, K.L.1
Smith, R.D.2
Dunbar, J.B.3
Stuckey, J.A.4
Carlson, H.A.5
-
5
-
-
84860517509
-
New Parenteral Anticoagulants: Focus on Factor Xa and Thrombin Inhibitors
-
Ahrens, I.; Bode, C. New Parenteral Anticoagulants: Focus on Factor Xa and Thrombin Inhibitors Curr. Drug Discovery Technol. 2012, 9, 129-136 10.2174/1570163811209020129
-
(2012)
Curr. Drug Discovery Technol.
, vol.9
, pp. 129-136
-
-
Ahrens, I.1
Bode, C.2
-
6
-
-
84860536853
-
The Role of Structural Information in the Discovery of Direct Thrombin and Factor Xa Inhibitors
-
Nar, H. The Role of Structural Information in the Discovery of Direct Thrombin and Factor Xa Inhibitors Trends Pharmacol. Sci. 2012, 33, 279-288 10.1016/j.tips.2012.03.004
-
(2012)
Trends Pharmacol. Sci.
, vol.33
, pp. 279-288
-
-
Nar, H.1
-
7
-
-
84862275055
-
The Emergence of Factor Xa Inhibitors for the Treatment of Cardiovascular Diseases: A Patent Review
-
Pinto, D. J.; Qiao, J. X.; Knabb, R. M. The Emergence of Factor Xa Inhibitors for the Treatment of Cardiovascular Diseases: A Patent Review Expert Opin. Ther. Pat. 2012, 22, 645-661 10.1517/13543776.2012.680438
-
(2012)
Expert Opin. Ther. Pat.
, vol.22
, pp. 645-661
-
-
Pinto, D.J.1
Qiao, J.X.2
Knabb, R.M.3
-
8
-
-
84866055536
-
Oral Factor Xa and Direct Thrombin Inhibitors: A Clinical Perspective
-
Thethi, I.; Lewis, B.; Fareed, J. Oral Factor Xa and Direct Thrombin Inhibitors: A Clinical Perspective J. Burn Care Res. 2012, 33, 453-461 10.1097/BCR.0b013e318248bc4c
-
(2012)
J. Burn Care Res.
, vol.33
, pp. 453-461
-
-
Thethi, I.1
Lewis, B.2
Fareed, J.3
-
9
-
-
84866889137
-
Oral Direct Factor Xa Inhibitors
-
Yeh, C. H.; Fredenburgh, J. C.; Weitz, J. I. Oral Direct Factor Xa Inhibitors Circ. Res. 2012, 111, 1069-1078 10.1161/CIRCRESAHA.112.276741
-
(2012)
Circ. Res.
, vol.111
, pp. 1069-1078
-
-
Yeh, C.H.1
Fredenburgh, J.C.2
Weitz, J.I.3
-
10
-
-
84874393418
-
Efficacy and Toxicity of Factor Xa Inhibitors
-
Bondarenko, M.; Curti, C.; Montana, M.; Rathelot, P.; Vanelle, P. Efficacy and Toxicity of Factor Xa Inhibitors J. Pharm. Pharm. Sci. 2013, 16, 74-88
-
(2013)
J. Pharm. Pharm. Sci.
, vol.16
, pp. 74-88
-
-
Bondarenko, M.1
Curti, C.2
Montana, M.3
Rathelot, P.4
Vanelle, P.5
-
11
-
-
84894655182
-
Structure-Function Relationships of Factor Xa Inhibitors: Implications for the Practicing Clinician
-
Steinberg, B. A.; Becker, R. C. Structure-Function Relationships of Factor Xa Inhibitors: Implications for the Practicing Clinician J. Thromb. Thrombolysis 2014, 37, 234-241 10.1007/s11239-013-0991-z
-
(2014)
J. Thromb. Thrombolysis
, vol.37
, pp. 234-241
-
-
Steinberg, B.A.1
Becker, R.C.2
-
12
-
-
84897481094
-
Targeting Factor Xa and Thrombin: Impact on Coagulation and beyond
-
Esmon, C. T. Targeting Factor Xa and Thrombin: Impact on Coagulation and Beyond Thromb. Haemostasis 2014, 111, 625-633 10.1160/TH13-09-0730
-
(2014)
Thromb. Haemostasis
, vol.111
, pp. 625-633
-
-
Esmon, C.T.1
-
13
-
-
75749123824
-
Spleen Tyrosine Kinase: An Src family of Non-Receptor Kinase Has Multiple Functions and Represents a Valuable Therapeutic Target in the Treatment of Autoimmune and Inflammatory Diseases
-
Ghosh, D.; Tsokos, G. C. Spleen Tyrosine Kinase: An Src family of Non-Receptor Kinase Has Multiple Functions and Represents a Valuable Therapeutic Target in the Treatment of Autoimmune and Inflammatory Diseases Autoimmunity 2010, 43, 48-55 10.3109/08916930903374717
-
(2010)
Autoimmunity
, vol.43
, pp. 48-55
-
-
Ghosh, D.1
Tsokos, G.C.2
-
14
-
-
77952887713
-
The SYK Tyrosine Kinase: A Crucial Player in Diverse Biological Functions
-
Mocsai, A.; Ruland, J.; Tybulewicz, V. L. The SYK Tyrosine Kinase: A Crucial Player in Diverse Biological Functions Nat. Rev. Immunol. 2010, 10, 387-402 10.1038/nri2765
-
(2010)
Nat. Rev. Immunol.
, vol.10
, pp. 387-402
-
-
Mocsai, A.1
Ruland, J.2
Tybulewicz, V.L.3
-
15
-
-
79959261430
-
Spleen Tyrosine Kinase Inhibition in the Treatment of Autoimmune, Allergic and Autoinflammatory Diseases
-
Pamuk, O. N.; Tsokos, G. C. Spleen Tyrosine Kinase Inhibition in the Treatment of Autoimmune, Allergic and Autoinflammatory Diseases Arthritis Res. Ther. 2010, 12, 222 10.1186/ar3198
-
(2010)
Arthritis Res. Ther.
, vol.12
, pp. 222
-
-
Pamuk, O.N.1
Tsokos, G.C.2
-
16
-
-
77954315861
-
Spleen Tyrosine Kinases: Biology, Therapeutic Targets and Drugs
-
Riccaboni, M.; Bianchi, I.; Petrillo, P. Spleen Tyrosine Kinases: Biology, Therapeutic Targets and Drugs Drug Discovery Today 2010, 15, 517-530 10.1016/j.drudis.2010.05.001
-
(2010)
Drug Discovery Today
, vol.15
, pp. 517-530
-
-
Riccaboni, M.1
Bianchi, I.2
Petrillo, P.3
-
17
-
-
77956654136
-
Spleen Tyrosine Kinase as a Molecular Target for Treatment of Leukemias and Lymphomas
-
Uckun, F. M.; Qazi, S. Spleen Tyrosine Kinase as a Molecular Target for Treatment of Leukemias and Lymphomas Expert Rev. Anticancer Ther. 2010, 10, 1407-1418 10.1586/era.10.112
-
(2010)
Expert Rev. Anticancer Ther.
, vol.10
, pp. 1407-1418
-
-
Uckun, F.M.1
Qazi, S.2
-
18
-
-
79959707214
-
Role of Spleen Tyrosine Kinase Inhibitors in the Management of Rheumatoid Arthritis
-
Scott, D. L. Role of Spleen Tyrosine Kinase Inhibitors in the Management of Rheumatoid Arthritis Drugs 2011, 71, 1121-1132 10.2165/11591480-000000000-00000
-
(2011)
Drugs
, vol.71
, pp. 1121-1132
-
-
Scott, D.L.1
-
19
-
-
84867304046
-
The SYK side of TLR4: Signalling Mechanisms in Response to LPS and Minimally Oxidized LDL
-
Miller, Y. I.; Choi, S. H.; Wiesner, P.; Bae, Y. S. The SYK side of TLR4: Signalling Mechanisms in Response to LPS and Minimally Oxidized LDL Br. J. Pharmacol. 2012, 167, 990-999 10.1111/j.1476-5381.2012.02097.x
-
(2012)
Br. J. Pharmacol.
, vol.167
, pp. 990-999
-
-
Miller, Y.I.1
Choi, S.H.2
Wiesner, P.3
Bae, Y.S.4
-
20
-
-
84881000237
-
Inhibitors of Switch Kinase 'Spleen Tyrosine Kinase' in Inflammation and Immune-Mediated Disorders: A Review
-
Kaur, M.; Singh, M.; Silakari, O. Inhibitors of Switch Kinase 'Spleen Tyrosine Kinase' in Inflammation and Immune-Mediated Disorders: A Review Eur. J. Med. Chem. 2013, 67, 434-446 10.1016/j.ejmech.2013.04.070
-
(2013)
Eur. J. Med. Chem.
, vol.67
, pp. 434-446
-
-
Kaur, M.1
Singh, M.2
Silakari, O.3
-
21
-
-
84879817002
-
Inhibition of Spleen Tyrosine Kinase in the Treatment of Rheumatoid Arthritis
-
Nijjar, J. S.; Tindell, A.; McInnes, I. B.; Siebert, S. Inhibition of Spleen Tyrosine Kinase in the Treatment of Rheumatoid Arthritis Rheumatology 2013, 52, 1556-1562 10.1093/rheumatology/ket225
-
(2013)
Rheumatology
, vol.52
, pp. 1556-1562
-
-
Nijjar, J.S.1
Tindell, A.2
McInnes, I.B.3
Siebert, S.4
-
22
-
-
84898936413
-
Spleen Tyrosine Kinase Inhibitors: A Review of the Patent Literature 2010 - 2013
-
Norman, P. Spleen Tyrosine Kinase Inhibitors: A Review of the Patent Literature 2010-2013 Expert Opin. Ther. Pat. 2014, 24, 573-595 10.1517/13543776.2014.890184
-
(2014)
Expert Opin. Ther. Pat.
, vol.24
, pp. 573-595
-
-
Norman, P.1
-
23
-
-
84905459655
-
Getting Syk: Spleen Tyrosine Kinase as a Therapeutic Target
-
Geahlen, R. L. Getting Syk: Spleen Tyrosine Kinase as a Therapeutic Target Trends Pharmacol. Sci. 2014, 35, 414-422 10.1016/j.tips.2014.05.007
-
(2014)
Trends Pharmacol. Sci.
, vol.35
, pp. 414-422
-
-
Geahlen, R.L.1
-
24
-
-
0142216637
-
Insights into Catalysis by a Knotted TrmD tRNA Methyltransferase
-
Elkins, P. A.; Watts, J. M.; Zalacain, M.; van Thiel, A.; Vitazka, P. R.; Redlak, M.; Andraos-Selim, C.; Rastinejad, F.; Holmes, W. M. Insights into Catalysis by a Knotted TrmD tRNA Methyltransferase J. Mol. Biol. 2003, 333, 931-949 10.1016/j.jmb.2003.09.011
-
(2003)
J. Mol. Biol.
, vol.333
, pp. 931-949
-
-
Elkins, P.A.1
Watts, J.M.2
Zalacain, M.3
Van Thiel, A.4
Vitazka, P.R.5
Redlak, M.6
Andraos-Selim, C.7
Rastinejad, F.8
Holmes, W.M.9
-
25
-
-
3142735061
-
Isolation and Characterization of the Human tRNA-(N1G37) Methyltransferase (TRM5) and Comparison to the Escherichia coli TrmD Protein
-
Brule, H.; Elliott, M.; Redlak, M.; Zehner, Z. E.; Holmes, W. M. Isolation and Characterization of the Human tRNA-(N1G37) Methyltransferase (TRM5) and Comparison to the Escherichia coli TrmD Protein Biochemistry 2004, 43, 9243-9255 10.1021/bi049671q
-
(2004)
Biochemistry
, vol.43
, pp. 9243-9255
-
-
Brule, H.1
Elliott, M.2
Redlak, M.3
Zehner, Z.E.4
Holmes, W.M.5
-
26
-
-
34748874591
-
Distinct Determinants of tRNA Recognition by the TrmD and Trm5 Methyl Transferases
-
Christian, T.; Hou, Y. M. Distinct Determinants of tRNA Recognition by the TrmD and Trm5 Methyl Transferases J. Mol. Biol. 2007, 373, 623-632 10.1016/j.jmb.2007.08.010
-
(2007)
J. Mol. Biol.
, vol.373
, pp. 623-632
-
-
Christian, T.1
Hou, Y.M.2
-
27
-
-
79959295743
-
Differentiating Analogous tRNA Methyltransferases by Fragments of the Methyl Donor
-
Lahoud, G.; Goto-Ito, S.; Yoshida, K.; Ito, T.; Yokoyama, S.; Hou, Y. M. Differentiating Analogous tRNA Methyltransferases by Fragments of the Methyl Donor RNA 2011, 17, 1236-1246 10.1261/rna.2706011
-
(2011)
RNA
, vol.17
, pp. 1236-1246
-
-
Lahoud, G.1
Goto-Ito, S.2
Yoshida, K.3
Ito, T.4
Yokoyama, S.5
Hou, Y.M.6
-
28
-
-
84885006896
-
Selective Inhibitors of Bacterial t-RNA-(N(1)G37) Methyltransferase (TrmD) That Demonstrate Novel Ordering of the Lid Domain
-
Hill, P. J.; Abibi, A.; Albert, R.; Andrews, B.; Gagnon, M. M.; Gao, N.; Grebe, T.; Hajec, L. I.; Huang, J.; Livchak, S.; Lahiri, S. D.; McKinney, D. C.; Thresher, J.; Wang, H.; Olivier, N.; Buurman, E. T. Selective Inhibitors of Bacterial t-RNA-(N(1)G37) Methyltransferase (TrmD) That Demonstrate Novel Ordering of the Lid Domain J. Med. Chem. 2013, 56, 7278-7288 10.1021/jm400718n
-
(2013)
J. Med. Chem.
, vol.56
, pp. 7278-7288
-
-
Hill, P.J.1
Abibi, A.2
Albert, R.3
Andrews, B.4
Gagnon, M.M.5
Gao, N.6
Grebe, T.7
Hajec, L.I.8
Huang, J.9
Livchak, S.10
Lahiri, S.D.11
McKinney, D.C.12
Thresher, J.13
Wang, H.14
Olivier, N.15
Buurman, E.T.16
-
29
-
-
84883203343
-
Conservation of Structure and Mechanism by Trm5 Enzymes
-
Christian, T.; Gamper, H.; Hou, Y. M. Conservation of Structure and Mechanism by Trm5 Enzymes RNA 2013, 19, 1192-1199 10.1261/rna.039503.113
-
(2013)
RNA
, vol.19
, pp. 1192-1199
-
-
Christian, T.1
Gamper, H.2
Hou, Y.M.3
-
30
-
-
0033954256
-
The Protein Data Bank
-
Berman, H. M.; Westbrook, J.; Feng, Z.; Gilliland, G.; Bhat, T. N.; Weissig, H.; Shindyalov, I. N.; Bourne, P. E. The Protein Data Bank Nucleic Acids Res. 2000, 28, 235-242 10.1093/nar/28.1.235
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
31
-
-
0041919542
-
Improved Protein-Ligand Docking Using GOLD
-
Verdonk, M. L.; Cole, J. C.; Hartshorn, M. J.; Murray, C. W.; Taylor, R. D. Improved Protein-Ligand Docking Using GOLD Proteins: Struct., Funct., Genet. 2003, 52, 609-623 10.1002/prot.10465
-
(2003)
Proteins: Struct., Funct., Genet.
, vol.52
, pp. 609-623
-
-
Verdonk, M.L.1
Cole, J.C.2
Hartshorn, M.J.3
Murray, C.W.4
Taylor, R.D.5
-
32
-
-
70349932423
-
AutoDock4 and AutoDockTools4: Automated Docking with Selective Receptor Flexibility
-
Morris, G. M.; Huey, R.; Lindstrom, W.; Sanner, M. F.; Belew, R. K.; Goodsell, D. S.; Olson, A. J. AutoDock4 and AutoDockTools4: Automated Docking With Selective Receptor Flexibility J. Comput. Chem. 2009, 30, 2785-2791 10.1002/jcc.21256
-
(2009)
J. Comput. Chem.
, vol.30
, pp. 2785-2791
-
-
Morris, G.M.1
Huey, R.2
Lindstrom, W.3
Sanner, M.F.4
Belew, R.K.5
Goodsell, D.S.6
Olson, A.J.7
-
33
-
-
76149120388
-
AutoDock Vina: Improving the Speed and Accuracy of Docking with a New Scoring Function, Efficient Optimization, and Multithreading
-
Trott, O.; Olson, A. J. AutoDock Vina: Improving the Speed and Accuracy of Docking With a New Scoring Function, Efficient Optimization, and Multithreading J. Comput. Chem. 2010, 31, 455-461 10.1002/jcc.21334
-
(2010)
J. Comput. Chem.
, vol.31
, pp. 455-461
-
-
Trott, O.1
Olson, A.J.2
-
34
-
-
84863111119
-
Evaluation of Docking Performance in a Blinded Virtual Screening of Fragment-Like Trypsin Inhibitors
-
Surpateanu, G.; Iorga, B. I. Evaluation of Docking Performance in a Blinded Virtual Screening of Fragment-Like Trypsin Inhibitors J. Comput.-Aided Mol. Des. 2012, 26, 595-601 10.1007/s10822-011-9526-x
-
(2012)
J. Comput.-Aided Mol. Des.
, vol.26
, pp. 595-601
-
-
Surpateanu, G.1
Iorga, B.I.2
-
35
-
-
84902794813
-
Virtual Screening of the SAMPL4 Blinded HIV Integrase Inhibitors Dataset
-
Colas, C.; Iorga, B. I. Virtual Screening of the SAMPL4 Blinded HIV Integrase Inhibitors Dataset J. Comput.-Aided Mol. Des. 2014, 28, 455-462 10.1007/s10822-014-9707-5
-
(2014)
J. Comput.-Aided Mol. Des.
, vol.28
, pp. 455-462
-
-
Colas, C.1
Iorga, B.I.2
|