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Volumn 113, Issue 25, 2016, Pages E3501-E3508

A scalable strategy for high-throughput GFP tagging of endogenous human proteins

Author keywords

CRISPR Cas9; Genome engineering; GFP library

Indexed keywords

CASPASE 9; RIBONUCLEOPROTEIN; GREEN FLUORESCENT PROTEIN; PROTEIN;

EID: 84975744753     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1606731113     Document Type: Article
Times cited : (168)

References (39)
  • 1
    • 7244245762 scopus 로고    scopus 로고
    • Finishing the euchromatic sequence of the human genome
    • International Human Genome Sequencing Consortium (2004) Finishing the euchromatic sequence of the human genome. Nature 431(7011):931-945.
    • (2004) Nature , vol.431 , Issue.7011 , pp. 931-945
  • 2
    • 72449145463 scopus 로고    scopus 로고
    • 'Unknown' proteins and 'orphan' enzymes: The missing half of the engineering parts list-and how to find it
    • Hanson AD, Pribat A, Waller JC, de Crécy-Lagard V (2009) 'Unknown' proteins and 'orphan' enzymes: The missing half of the engineering parts list-and how to find it. Biochem J 425(1):1-11.
    • (2009) Biochem J , vol.425 , Issue.1 , pp. 1-11
    • Hanson, A.D.1    Pribat, A.2    Waller, J.C.3    De Crécy-Lagard, V.4
  • 3
    • 84923083333 scopus 로고    scopus 로고
    • Systematic discovery of human gene function and principles of modular organization through phylogenetic profiling
    • Dey G, Jaimovich A, Collins SR, Seki A, Meyer T (2015) Systematic discovery of human gene function and principles of modular organization through phylogenetic profiling. Cell Rep 10(6):993-1006.
    • (2015) Cell Rep , vol.10 , Issue.6 , pp. 993-1006
    • Dey, G.1    Jaimovich, A.2    Collins, S.R.3    Seki, A.4    Meyer, T.5
  • 4
    • 84874743524 scopus 로고    scopus 로고
    • The contribution of systematic approaches to characterizing the proteins and functions of the endoplasmic reticulum
    • Schuldiner M, Weissman JS (2013) The contribution of systematic approaches to characterizing the proteins and functions of the endoplasmic reticulum. Cold Spring Harb Perspect Biol 5(3):a013284.
    • (2013) Cold Spring Harb Perspect Biol , vol.5 , Issue.3
    • Schuldiner, M.1    Weissman, J.S.2
  • 5
    • 0142184341 scopus 로고    scopus 로고
    • Global analysis of protein localization in budding yeast
    • Huh W-K, et al. (2003) Global analysis of protein localization in budding yeast. Nature 425(6959):686-691.
    • (2003) Nature , vol.425 , Issue.6959 , pp. 686-691
    • Huh, W.-K.1
  • 6
    • 0037050026 scopus 로고    scopus 로고
    • Functional organization of the yeast proteome by systematic analysis of protein complexes
    • Gavin A-C, et al. (2002) Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415(6868):141-147.
    • (2002) Nature , vol.415 , Issue.6868 , pp. 141-147
    • Gavin, A.-C.1
  • 7
    • 33645453254 scopus 로고    scopus 로고
    • Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
    • Krogan NJ, et al. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 440(7084):637-643.
    • (2006) Nature , vol.440 , Issue.7084 , pp. 637-643
    • Krogan, N.J.1
  • 9
    • 0142215475 scopus 로고    scopus 로고
    • Global analysis of protein expression in yeast
    • Ghaemmaghami S, et al. (2003) Global analysis of protein expression in yeast. Nature 425(6959):737-741.
    • (2003) Nature , vol.425 , Issue.6959 , pp. 737-741
    • Ghaemmaghami, S.1
  • 10
    • 84930684870 scopus 로고    scopus 로고
    • Yeast proteome dynamics from single cell imaging and automated analysis
    • Chong YT, et al. (2015) Yeast proteome dynamics from single cell imaging and automated analysis. Cell 161(6):1413-1424.
    • (2015) Cell , vol.161 , Issue.6 , pp. 1413-1424
    • Chong, Y.T.1
  • 11
    • 84904764792 scopus 로고    scopus 로고
    • The emergence of proteome-wide technologies: Systematic analysis of proteins comes of age
    • Breker M, Schuldiner M (2014) The emergence of proteome-wide technologies: Systematic analysis of proteins comes of age. Nat Rev Mol Cell Biol 15(7):453-464.
    • (2014) Nat Rev Mol Cell Biol , vol.15 , Issue.7 , pp. 453-464
    • Breker, M.1    Schuldiner, M.2
  • 12
    • 84873729095 scopus 로고    scopus 로고
    • Multiplex genome engineering using CRISPR/Cas systems
    • Cong L, et al. (2013) Multiplex genome engineering using CRISPR/Cas systems. Science 339(6121):819-823.
    • (2013) Science , vol.339 , Issue.6121 , pp. 819-823
    • Cong, L.1
  • 13
    • 84876567971 scopus 로고    scopus 로고
    • RNA-programmed genome editing in human cells
    • Jinek M, et al. (2013) RNA-programmed genome editing in human cells. eLife 2:e00471.
    • (2013) eLife , vol.2
    • Jinek, M.1
  • 14
    • 84983792922 scopus 로고    scopus 로고
    • Enhanced homology-directed human genome engineering by controlled timing of CRISPR/Cas9 delivery
    • Lin S, Staahl BT, Alla RK, Doudna JA (2014) Enhanced homology-directed human genome engineering by controlled timing of CRISPR/Cas9 delivery. eLife 3:e04766.
    • (2014) eLife , vol.3
    • Lin, S.1    Staahl, B.T.2    Alla, R.K.3    Doudna, J.A.4
  • 15
    • 84901834420 scopus 로고    scopus 로고
    • Highly efficient RNA-guided genome editing in human cells via delivery of purified Cas9 ribonucleoproteins
    • Kim S, Kim D, Cho SW, Kim J, Kim JS (2014) Highly efficient RNA-guided genome editing in human cells via delivery of purified Cas9 ribonucleoproteins. Genome Res 24(6):1012-1019.
    • (2014) Genome Res , vol.24 , Issue.6 , pp. 1012-1019
    • Kim, S.1    Kim, D.2    Cho, S.W.3    Kim, J.4    Kim, J.S.5
  • 17
    • 84948067587 scopus 로고    scopus 로고
    • A human interactome in three quantitative dimensions organized by stoichiometries and abundances
    • Hein MY, et al. (2015) A human interactome in three quantitative dimensions organized by stoichiometries and abundances. Cell 163(3):712-723.
    • (2015) Cell , vol.163 , Issue.3 , pp. 712-723
    • Hein, M.Y.1
  • 18
    • 77952344256 scopus 로고    scopus 로고
    • Quantitative proteomics combined with BAC TransgeneOmics reveals in vivo protein interactions
    • Hubner NC, et al. (2010) Quantitative proteomics combined with BAC TransgeneOmics reveals in vivo protein interactions. J Cell Biol 189(4):739-754.
    • (2010) J Cell Biol , vol.189 , Issue.4 , pp. 739-754
    • Hubner, N.C.1
  • 19
    • 84961654781 scopus 로고    scopus 로고
    • Versatile protein tagging in cells with split fluorescent protein
    • Kamiyama D, et al. (2016) Versatile protein tagging in cells with split fluorescent protein. Nat Commun 7:11046.
    • (2016) Nat Commun , vol.7
    • Kamiyama, D.1
  • 20
    • 13244296604 scopus 로고    scopus 로고
    • Protein tagging and detection with engineered self-assembling fragments of green fluorescent protein
    • Cabantous S, Terwilliger TC, Waldo GS (2005) Protein tagging and detection with engineered self-assembling fragments of green fluorescent protein. Nat Biotechnol 23(1):102-107.
    • (2005) Nat Biotechnol , vol.23 , Issue.1 , pp. 102-107
    • Cabantous, S.1    Terwilliger, T.C.2    Waldo, G.S.3
  • 21
    • 48249109511 scopus 로고    scopus 로고
    • Deconstructing green fluorescent protein
    • Kent KP, Childs W, Boxer SG (2008) Deconstructing green fluorescent protein. JAm Chem Soc 130(30):9664-9665.
    • (2008) JAm Chem Soc , vol.130 , Issue.30 , pp. 9664-9665
    • Kent, K.P.1    Childs, W.2    Boxer, S.G.3
  • 22
    • 84865070369 scopus 로고    scopus 로고
    • A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
    • Jinek M, et al. (2012) A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science 337(6096):816-821.
    • (2012) Science , vol.337 , Issue.6096 , pp. 816-821
    • Jinek, M.1
  • 23
    • 84884289608 scopus 로고    scopus 로고
    • One-step generation of mice carrying reporter and conditional alleles by CRISPR/Cas-mediated genome engineering
    • Yang H, et al. (2013) One-step generation of mice carrying reporter and conditional alleles by CRISPR/Cas-mediated genome engineering. Cell 154(6):1370-1379.
    • (2013) Cell , vol.154 , Issue.6 , pp. 1370-1379
    • Yang, H.1
  • 24
    • 0028820187 scopus 로고
    • Solid-phase reversible immobilization for the isolation of PCR products
    • DeAngelis MM, Wang DG, Hawkins TL (1995) Solid-phase reversible immobilization for the isolation of PCR products. Nucleic Acids Res 23(22):4742-4743.
    • (1995) Nucleic Acids Res , vol.23 , Issue.22 , pp. 4742-4743
    • DeAngelis, M.M.1    Wang, D.G.2    Hawkins, T.L.3
  • 25
    • 84909607974 scopus 로고    scopus 로고
    • Principles of ER cotranslational translocation revealed by proximity-specific ribosome profiling
    • Jan CH, Williams CC, Weissman JS (2014) Principles of ER cotranslational translocation revealed by proximity-specific ribosome profiling. Science 346(6210):1257521.
    • (2014) Science , vol.346 , Issue.6210
    • Jan, C.H.1    Williams, C.C.2    Weissman, J.S.3
  • 26
    • 84864453787 scopus 로고    scopus 로고
    • The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments
    • Ingolia NT, Brar GA, Rouskin S, McGeachy AM, Weissman JS (2012) The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments. Nat Protoc 7(8):1534-1550.
    • (2012) Nat Protoc , vol.7 , Issue.8 , pp. 1534-1550
    • Ingolia, N.T.1    Brar, G.A.2    Rouskin, S.3    McGeachy, A.M.4    Weissman, J.S.5
  • 27
    • 84899550455 scopus 로고    scopus 로고
    • Quantifying absolute protein synthesis rates reveals principles underlying allocation of cellular resources
    • Li G-W, Burkhardt D, Gross C, Weissman JS (2014) Quantifying absolute protein synthesis rates reveals principles underlying allocation of cellular resources. Cell 157(3):624-635.
    • (2014) Cell , vol.157 , Issue.3 , pp. 624-635
    • Li, G.-W.1    Burkhardt, D.2    Gross, C.3    Weissman, J.S.4
  • 28
    • 80052292973 scopus 로고    scopus 로고
    • High-frequency genome editing using ssDNA oligonucleotides with zinc-finger nucleases
    • Chen F, et al. (2011) High-frequency genome editing using ssDNA oligonucleotides with zinc-finger nucleases. Nat Methods 8(9):753-755.
    • (2011) Nat Methods , vol.8 , Issue.9 , pp. 753-755
    • Chen, F.1
  • 29
    • 84928395184 scopus 로고    scopus 로고
    • RNA imaging. Spatially resolved, highly multiplexed RNA profiling in single cells
    • Chen KH, Boettiger AN, Moffitt JR, Wang S, Zhuang X (2015) RNA imaging. Spatially resolved, highly multiplexed RNA profiling in single cells. Science 348(6233):aaa6090.
    • (2015) Science , vol.348 , Issue.6233
    • Chen, K.H.1    Boettiger, A.N.2    Moffitt, J.R.3    Wang, S.4    Zhuang, X.5
  • 30
    • 56549103395 scopus 로고    scopus 로고
    • The cohesin complex and its roles in chromosome biology
    • Peters J-M, Tedeschi A, Schmitz J (2008) The cohesin complex and its roles in chromosome biology. Genes Dev 22(22):3089-3114.
    • (2008) Genes Dev , vol.22 , Issue.22 , pp. 3089-3114
    • Peters, J.-M.1    Tedeschi, A.2    Schmitz, J.3
  • 31
    • 84861361690 scopus 로고    scopus 로고
    • Mechanisms of Sec61/SecY-mediated protein translocation across membranes
    • Park E, Rapoport TA (2012) Mechanisms of Sec61/SecY-mediated protein translocation across membranes. Annu Rev Biophys 41:21-40.
    • (2012) Annu Rev Biophys , vol.41 , pp. 21-40
    • Park, E.1    Rapoport, T.A.2
  • 32
    • 84870212873 scopus 로고    scopus 로고
    • Diversity of clathrin function: New tricks for an old protein
    • Brodsky FM (2012) Diversity of clathrin function: New tricks for an old protein. Annu Rev Cell Dev Biol 28:309-336.
    • (2012) Annu Rev Cell Dev Biol , vol.28 , pp. 309-336
    • Brodsky, F.M.1
  • 33
    • 78649373124 scopus 로고    scopus 로고
    • Membranes in balance: Mechanisms of sphingolipid homeostasis
    • Breslow DK, Weissman JS (2010) Membranes in balance: Mechanisms of sphingolipid homeostasis. Mol Cell 40(2):267-279.
    • (2010) Mol Cell , vol.40 , Issue.2 , pp. 267-279
    • Breslow, D.K.1    Weissman, J.S.2
  • 34
    • 73349085934 scopus 로고    scopus 로고
    • An auxinbased degron system for the rapid depletion of proteins in nonplant cells
    • Nishimura K, Fukagawa T, Takisawa H, Kakimoto T, Kanemaki M (2009) An auxinbased degron system for the rapid depletion of proteins in nonplant cells. Nat Methods 6(12):917-922.
    • (2009) Nat Methods , vol.6 , Issue.12 , pp. 917-922
    • Nishimura, K.1    Fukagawa, T.2    Takisawa, H.3    Kakimoto, T.4    Kanemaki, M.5
  • 35
    • 33646011258 scopus 로고    scopus 로고
    • Fluorescence-detection size-exclusion chromatography for precrystallization screening of integral membrane proteins
    • Kawate T, Gouaux E (2006) Fluorescence-detection size-exclusion chromatography for precrystallization screening of integral membrane proteins. Structure 14(4):673-681.
    • (2006) Structure , vol.14 , Issue.4 , pp. 673-681
    • Kawate, T.1    Gouaux, E.2
  • 36
    • 84655170273 scopus 로고    scopus 로고
    • Safe harbours for the integration of new DNA in the human genome
    • Sadelain M, Papapetrou EP, Bushman FD (2011) Safe harbours for the integration of new DNA in the human genome. Nat Rev Cancer 12(1):51-58.
    • (2011) Nat Rev Cancer , vol.12 , Issue.1 , pp. 51-58
    • Sadelain, M.1    Papapetrou, E.P.2    Bushman, F.D.3
  • 37
    • 84921540377 scopus 로고    scopus 로고
    • Rational design of highly active sgRNAs for CRISPR-Cas9-mediated gene inactivation
    • Doench JG, et al. (2014) Rational design of highly active sgRNAs for CRISPR-Cas9-mediated gene inactivation. Nat Biotechnol 32(12):1262-1267.
    • (2014) Nat Biotechnol , vol.32 , Issue.12 , pp. 1262-1267
    • Doench, J.G.1
  • 38
    • 84959123021 scopus 로고    scopus 로고
    • CRISPRscan: Designing highly efficient sgRNAs for CRISPR-Cas9 targeting in vivo
    • Moreno-Mateos MA, et al. (2015) CRISPRscan: Designing highly efficient sgRNAs for CRISPR-Cas9 targeting in vivo. Nat Methods 12(10):982-988.
    • (2015) Nat Methods , vol.12 , Issue.10 , pp. 982-988
    • Moreno-Mateos, M.A.1
  • 39
    • 84969195094 scopus 로고    scopus 로고
    • Nucleosomes impede Cas9 access to DNA in vivo and in vitro
    • Horlbeck MA, et al. (2016) Nucleosomes impede Cas9 access to DNA in vivo and in vitro. eLife 5:e12677.
    • (2016) eLife , vol.5
    • Horlbeck, M.A.1


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