-
1
-
-
0023650543
-
The Codon Adaptation Index: a measure of directional synonymous codon usage bias, and its potential applications
-
Sharp P.M., Li W.H. The Codon Adaptation Index: a measure of directional synonymous codon usage bias, and its potential applications. Nucl Acids Res 1987, 15:1281-1295.
-
(1987)
Nucl Acids Res
, vol.15
, pp. 1281-1295
-
-
Sharp, P.M.1
Li, W.H.2
-
2
-
-
0017368336
-
Preponderance of synonymous changes as evidence for the neutral theory of molecular evolution
-
Kimura M. Preponderance of synonymous changes as evidence for the neutral theory of molecular evolution. Nature 1977, 267:275-276.
-
(1977)
Nature
, vol.267
, pp. 275-276
-
-
Kimura, M.1
-
3
-
-
84908701702
-
A critical analysis of codon optimization in human therapeutics
-
Mauro V.P., Chappell S.A. A critical analysis of codon optimization in human therapeutics. Trends Mol Med 2014, 20:604-613.
-
(2014)
Trends Mol Med
, vol.20
, pp. 604-613
-
-
Mauro, V.P.1
Chappell, S.A.2
-
4
-
-
84919873458
-
Molecular basis for the ribosome functioning as an L-tryptophan sensor
-
Bischoff L., Berninghausen O., Beckmann R. Molecular basis for the ribosome functioning as an L-tryptophan sensor. Cell Rep 2014, 9:469-475.
-
(2014)
Cell Rep
, vol.9
, pp. 469-475
-
-
Bischoff, L.1
Berninghausen, O.2
Beckmann, R.3
-
5
-
-
84922433015
-
Drug sensing by the ribosome induces translational arrest via active site perturbation
-
Arenz S., Meydan S., Starosta A.L., Berninghausen O., Beckmann R., Vazquez-Laslop N., Wilson D.N. Drug sensing by the ribosome induces translational arrest via active site perturbation. Mol Cell 2014, 56:446-452.
-
(2014)
Mol Cell
, vol.56
, pp. 446-452
-
-
Arenz, S.1
Meydan, S.2
Starosta, A.L.3
Berninghausen, O.4
Beckmann, R.5
Vazquez-Laslop, N.6
Wilson, D.N.7
-
6
-
-
1542358892
-
Nascent membrane and secretory proteins differ in FRET-detected folding far inside the ribosome and in their exposure to ribosomal proteins
-
Woolhead C.A., McCormick P.J., Johnson A.E. Nascent membrane and secretory proteins differ in FRET-detected folding far inside the ribosome and in their exposure to ribosomal proteins. Cell 2004, 116:725-736.
-
(2004)
Cell
, vol.116
, pp. 725-736
-
-
Woolhead, C.A.1
McCormick, P.J.2
Johnson, A.E.3
-
7
-
-
28544449949
-
Folding zones inside the ribosomal exit tunnel
-
Lu J., Deutsch C. Folding zones inside the ribosomal exit tunnel. Nat Struct Mol Biol 2005, 12:1123-1129.
-
(2005)
Nat Struct Mol Biol
, vol.12
, pp. 1123-1129
-
-
Lu, J.1
Deutsch, C.2
-
8
-
-
84960808742
-
Small protein domains fold inside the ribosome exit tunnel
-
Marino J., von Heijne G., Beckmann R. Small protein domains fold inside the ribosome exit tunnel. FEBS Lett 2016, 590:655-660.
-
(2016)
FEBS Lett
, vol.590
, pp. 655-660
-
-
Marino, J.1
von Heijne, G.2
Beckmann, R.3
-
9
-
-
84890856922
-
Transmembrane segments form tertiary hairpins in the folding vestibule of the ribosome
-
Tu L., Khanna P., Deutsch C. Transmembrane segments form tertiary hairpins in the folding vestibule of the ribosome. J Mol Biol 2014, 426:185-198.
-
(2014)
J Mol Biol
, vol.426
, pp. 185-198
-
-
Tu, L.1
Khanna, P.2
Deutsch, C.3
-
10
-
-
84886302057
-
Causes and effects of N-terminal codon bias in bacterial genes
-
Goodman D.B., Church G.M., Kosuri S. Causes and effects of N-terminal codon bias in bacterial genes. Science 2013, 342:475-479.
-
(2013)
Science
, vol.342
, pp. 475-479
-
-
Goodman, D.B.1
Church, G.M.2
Kosuri, S.3
-
11
-
-
64849114915
-
Coding-sequence determinants of gene expression in Escherichia coli
-
Kudla G., Murray A.W., Tollervey D., Plotkin J.B. Coding-sequence determinants of gene expression in Escherichia coli. Science 2009, 324:255-258.
-
(2009)
Science
, vol.324
, pp. 255-258
-
-
Kudla, G.1
Murray, A.W.2
Tollervey, D.3
Plotkin, J.B.4
-
12
-
-
84892981871
-
Expanding Anfinsen's principle: contributions of synonymous codon selection to rational protein design
-
Sander I.M., Chaney J.L., Clark P.L. Expanding Anfinsen's principle: contributions of synonymous codon selection to rational protein design. J Am Chem Soc 2014, 136:858-861.
-
(2014)
J Am Chem Soc
, vol.136
, pp. 858-861
-
-
Sander, I.M.1
Chaney, J.L.2
Clark, P.L.3
-
13
-
-
0024405193
-
Codon usage determines translation rate in Escherichia coli
-
Sorensen M.A., Kurland C.G., Pedersen S. Codon usage determines translation rate in Escherichia coli. J Mol Biol 1989, 207:365-377.
-
(1989)
J Mol Biol
, vol.207
, pp. 365-377
-
-
Sorensen, M.A.1
Kurland, C.G.2
Pedersen, S.3
-
14
-
-
84903457409
-
The effects of codon context on in vivo translation speed
-
Chevance F.F., Le Guyon S., Hughes K.T. The effects of codon context on in vivo translation speed. PLoS Genet 2014, 10:e1004392.
-
(2014)
PLoS Genet
, vol.10
, pp. e1004392
-
-
Chevance, F.F.1
Le Guyon, S.2
Hughes, K.T.3
-
15
-
-
84911468469
-
An integrated approach reveals regulatory controls on bacterial translation elongation
-
Subramaniam A.R., Zid B.M., O'Shea E.K. An integrated approach reveals regulatory controls on bacterial translation elongation. Cell 2014, 159:1200-1211.
-
(2014)
Cell
, vol.159
, pp. 1200-1211
-
-
Subramaniam, A.R.1
Zid, B.M.2
O'Shea, E.K.3
-
16
-
-
70349199628
-
Design parameters to control synthetic gene expression in Escherichia coli
-
Welch M., Govindarajan S., Ness J.E., Villalobos A., Gurney A., Minshull J., Gustafsson C. Design parameters to control synthetic gene expression in Escherichia coli. PLoS ONE 2009, 4:e7002.
-
(2009)
PLoS ONE
, vol.4
, pp. e7002
-
-
Welch, M.1
Govindarajan, S.2
Ness, J.E.3
Villalobos, A.4
Gurney, A.5
Minshull, J.6
Gustafsson, C.7
-
19
-
-
4644280499
-
Solving the riddle of codon usage preferences: a test for translational selection
-
dos Reis M., Savva R., Wernisch L. Solving the riddle of codon usage preferences: a test for translational selection. Nucl Acids Res 2004, 32:5036-5044.
-
(2004)
Nucl Acids Res
, vol.32
, pp. 5036-5044
-
-
dos Reis, M.1
Savva, R.2
Wernisch, L.3
-
20
-
-
64549100262
-
Generic algorithm to predict the speed of translational elongation: implications for protein biogenesis
-
Zhang G., Ignatova Z. Generic algorithm to predict the speed of translational elongation: implications for protein biogenesis. PLoS ONE 2009, 4:e5036.
-
(2009)
PLoS ONE
, vol.4
, pp. e5036
-
-
Zhang, G.1
Ignatova, Z.2
-
21
-
-
84873570699
-
Evolutionary conservation of codon optimality reveals hidden signatures of cotranslational folding
-
Pechmann S., Frydman J. Evolutionary conservation of codon optimality reveals hidden signatures of cotranslational folding. Nat Struct Mol Biol 2013, 20:237-243.
-
(2013)
Nat Struct Mol Biol
, vol.20
, pp. 237-243
-
-
Pechmann, S.1
Frydman, J.2
-
22
-
-
84865098071
-
Silent substitutions predictably alter translation elongation rates and protein folding efficiencies
-
Spencer P.S., Siller E., Anderson J.F., Barral J.M. Silent substitutions predictably alter translation elongation rates and protein folding efficiencies. J Mol Biol 2012, 422:328-335.
-
(2012)
J Mol Biol
, vol.422
, pp. 328-335
-
-
Spencer, P.S.1
Siller, E.2
Anderson, J.F.3
Barral, J.M.4
-
23
-
-
62549134121
-
Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling
-
Ingolia N.T., Ghaemmaghami S., Newman J.R., Weissman J.S. Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling. Science 2009, 324:218-223.
-
(2009)
Science
, vol.324
, pp. 218-223
-
-
Ingolia, N.T.1
Ghaemmaghami, S.2
Newman, J.R.3
Weissman, J.S.4
-
24
-
-
84860231100
-
The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria
-
Li G.W., Oh E., Weissman J.S. The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria. Nature 2012, 484:538-541.
-
(2012)
Nature
, vol.484
, pp. 538-541
-
-
Li, G.W.1
Oh, E.2
Weissman, J.S.3
-
25
-
-
84958115189
-
Clarifying the translational pausing landscape in bacteria by ribosome profiling
-
Mohammad F., Woolstenhulme C.J., Green R., Buskirk A.R. Clarifying the translational pausing landscape in bacteria by ribosome profiling. Cell Rep 2016, 14:686-694.
-
(2016)
Cell Rep
, vol.14
, pp. 686-694
-
-
Mohammad, F.1
Woolstenhulme, C.J.2
Green, R.3
Buskirk, A.R.4
-
26
-
-
0032699491
-
Synonymous codon substitutions affect ribosome traffic and protein folding during in vitro translation
-
Komar A.A., Lesnik T., Reiss C. Synonymous codon substitutions affect ribosome traffic and protein folding during in vitro translation. FEBS Lett 1999, 462:387-391.
-
(1999)
FEBS Lett
, vol.462
, pp. 387-391
-
-
Komar, A.A.1
Lesnik, T.2
Reiss, C.3
-
27
-
-
84940891331
-
Codon usage influences the local rate of translation elongation to regulate co-translational protein folding
-
Yu C.H., Dang Y., Zhou Z., Wu C., Zhao F., Sachs M.S., Liu Y. Codon usage influences the local rate of translation elongation to regulate co-translational protein folding. Mol Cell 2015, 59:744-754.
-
(2015)
Mol Cell
, vol.59
, pp. 744-754
-
-
Yu, C.H.1
Dang, Y.2
Zhou, Z.3
Wu, C.4
Zhao, F.5
Sachs, M.S.6
Liu, Y.7
-
28
-
-
84874683740
-
Non-optimal codon usage affects expression, structure and function of clock protein FRQ
-
Zhou M., Guo J., Cha J., Chae M., Chen S., Barral J.M., Sachs M.S., Liu Y. Non-optimal codon usage affects expression, structure and function of clock protein FRQ. Nature 2013, 495:111-115.
-
(2013)
Nature
, vol.495
, pp. 111-115
-
-
Zhou, M.1
Guo, J.2
Cha, J.3
Chae, M.4
Chen, S.5
Barral, J.M.6
Sachs, M.S.7
Liu, Y.8
-
29
-
-
33846504706
-
A "silent" polymorphism in the MDR1 gene changes substrate specificity
-
Kimchi-Sarfaty C., Oh J.M., Kim I.W., Sauna Z.E., Calcagno A.M., Ambudkar S.V., Gottesman M.M. A "silent" polymorphism in the MDR1 gene changes substrate specificity. Science 2007, 315:525-528.
-
(2007)
Science
, vol.315
, pp. 525-528
-
-
Kimchi-Sarfaty, C.1
Oh, J.M.2
Kim, I.W.3
Sauna, Z.E.4
Calcagno, A.M.5
Ambudkar, S.V.6
Gottesman, M.M.7
-
30
-
-
84903485906
-
Exposing synonymous mutations
-
Hunt R.C., Simhadri V.L., Iandoli M., Sauna Z.E., Kimchi-Sarfaty C. Exposing synonymous mutations. Trends Genet 2014, 30:308-321.
-
(2014)
Trends Genet
, vol.30
, pp. 308-321
-
-
Hunt, R.C.1
Simhadri, V.L.2
Iandoli, M.3
Sauna, Z.E.4
Kimchi-Sarfaty, C.5
-
31
-
-
0028286471
-
Kinetics versus thermodynamics in protein folding
-
Baker D., Agard D.A. Kinetics versus thermodynamics in protein folding. Biochemistry 1994, 33:7505-7509.
-
(1994)
Biochemistry
, vol.33
, pp. 7505-7509
-
-
Baker, D.1
Agard, D.A.2
-
32
-
-
36849036714
-
Identifying the subproteome of kinetically stable proteins via diagonal 2D SDS/PAGE
-
Xia K., Manning M., Hesham H., Lin Q., Bystroff C., Colon W. Identifying the subproteome of kinetically stable proteins via diagonal 2D SDS/PAGE. Proc Natl Acad Sci U S A 2007, 104:17329-17334.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 17329-17334
-
-
Xia, K.1
Manning, M.2
Hesham, H.3
Lin, Q.4
Bystroff, C.5
Colon, W.6
-
34
-
-
84948393936
-
Designed protein reveals structural determinants of extreme kinetic stability
-
Broom A., Ma S.M., Xia K., Rafalia H., Trainor K., Colon W., Gosavi S., Meiering E.M. Designed protein reveals structural determinants of extreme kinetic stability. Proc Natl Acad Sci U S A 2015, 112:14605-14610.
-
(2015)
Proc Natl Acad Sci U S A
, vol.112
, pp. 14605-14610
-
-
Broom, A.1
Ma, S.M.2
Xia, K.3
Rafalia, H.4
Trainor, K.5
Colon, W.6
Gosavi, S.7
Meiering, E.M.8
-
35
-
-
84928385447
-
Protein folding
-
Kim S.J., Yoon J.S., Shishido H., Yang Z., Rooney L.A., Barral J.M., Skach W.R. Protein folding. Translational tuning optimizes nascent protein folding in cells. 2015, 348:444-448.
-
(2015)
Translational tuning optimizes nascent protein folding in cells.
, vol.348
, pp. 444-448
-
-
Kim, S.J.1
Yoon, J.S.2
Shishido, H.3
Yang, Z.4
Rooney, L.A.5
Barral, J.M.6
Skach, W.R.7
-
36
-
-
84866623601
-
TRNA concentration fine tunes protein solubility
-
Fedyunin I., Lehnhardt L., Bohmer N., Kaufmann P., Zhang G., Ignatova Z. tRNA concentration fine tunes protein solubility. FEBS Lett 2012, 586:3336-3340.
-
(2012)
FEBS Lett
, vol.586
, pp. 3336-3340
-
-
Fedyunin, I.1
Lehnhardt, L.2
Bohmer, N.3
Kaufmann, P.4
Zhang, G.5
Ignatova, Z.6
-
37
-
-
84959418921
-
Integrated in vivo and in vitro nascent chain profiling reveals widespread translational pausing
-
Chadani Y., Niwa T., Chiba S., Taguchi H., Ito K. Integrated in vivo and in vitro nascent chain profiling reveals widespread translational pausing. Proc Natl Acad Sci U S A 2016, 113:E829-E838.
-
(2016)
Proc Natl Acad Sci U S A
, vol.113
, pp. E829-E838
-
-
Chadani, Y.1
Niwa, T.2
Chiba, S.3
Taguchi, H.4
Ito, K.5
-
38
-
-
48249093081
-
Heterologous protein expression is enhanced by harmonizing the codon usage frequencies of the target gene with those of the expression host
-
Angov E., Hillier C.J., Kincaid R.L., Lyon J.A. Heterologous protein expression is enhanced by harmonizing the codon usage frequencies of the target gene with those of the expression host. PLoS ONE 2008, 3:e2189.
-
(2008)
PLoS ONE
, vol.3
, pp. e2189
-
-
Angov, E.1
Hillier, C.J.2
Kincaid, R.L.3
Lyon, J.A.4
-
39
-
-
84957689489
-
Synonymous codons direct cotranslational folding toward different protein conformations
-
Buhr F., Jha S., Thommen M., Mittelstaet J., Kutz F., Schwalbe H., Rodnina M.V., Komar A.A. Synonymous codons direct cotranslational folding toward different protein conformations. Mol Cell 2016, 61:341-351.
-
(2016)
Mol Cell
, vol.61
, pp. 341-351
-
-
Buhr, F.1
Jha, S.2
Thommen, M.3
Mittelstaet, J.4
Kutz, F.5
Schwalbe, H.6
Rodnina, M.V.7
Komar, A.A.8
-
40
-
-
77649272553
-
Slowing bacterial translation speed enhances eukaryotic protein folding efficiency
-
Siller E., DeZwaan D.C., Anderson J.F., Freeman B.C., Barral J.M. Slowing bacterial translation speed enhances eukaryotic protein folding efficiency. J Mol Biol 2010, 396:1310-1318.
-
(2010)
J Mol Biol
, vol.396
, pp. 1310-1318
-
-
Siller, E.1
DeZwaan, D.C.2
Anderson, J.F.3
Freeman, B.C.4
Barral, J.M.5
-
41
-
-
77950659587
-
Cotranslational folding increases GFP folding yield
-
Ugrinov K.G., Clark P.L. Cotranslational folding increases GFP folding yield. Biophys J 2010, 98:1312-1320.
-
(2010)
Biophys J
, vol.98
, pp. 1312-1320
-
-
Ugrinov, K.G.1
Clark, P.L.2
-
42
-
-
84862972129
-
Kinetic analysis of ribosome-bound fluorescent proteins reveals an early, stable, cotranslational folding intermediate
-
Kelkar D.A., Khushoo A., Yang Z., Skach W.R. Kinetic analysis of ribosome-bound fluorescent proteins reveals an early, stable, cotranslational folding intermediate. J Biol Chem 2012, 287:2568-2578.
-
(2012)
J Biol Chem
, vol.287
, pp. 2568-2578
-
-
Kelkar, D.A.1
Khushoo, A.2
Yang, Z.3
Skach, W.R.4
-
43
-
-
0033203533
-
Co-translational folding of an alphavirus capsid protein in the cytosol of living cells
-
Nicola A.V., Chen W., Helenius A. Co-translational folding of an alphavirus capsid protein in the cytosol of living cells. Nat Cell Biol 1999, 1:341-345.
-
(1999)
Nat Cell Biol
, vol.1
, pp. 341-345
-
-
Nicola, A.V.1
Chen, W.2
Helenius, A.3
-
44
-
-
84937440655
-
Roles for synonymous codon usage in protein biogenesis
-
Chaney J.L., Clark P.L. Roles for synonymous codon usage in protein biogenesis. Ann Rev Biophys 2015, 44:143-166.
-
(2015)
Ann Rev Biophys
, vol.44
, pp. 143-166
-
-
Chaney, J.L.1
Clark, P.L.2
-
45
-
-
84959202639
-
A structural ensemble of a ribosome-nascent chain complex during cotranslational protein folding
-
Cabrita L.D., Cassaignau A.M., Launay H.M., Waudby C.A., Wlodarski T., Camilloni C., Karyadi M.E., Robertson A.L., Wang X., Wentink A.S., et al. A structural ensemble of a ribosome-nascent chain complex during cotranslational protein folding. Nat Struct Mol Biol 2016, 23:278-285.
-
(2016)
Nat Struct Mol Biol
, vol.23
, pp. 278-285
-
-
Cabrita, L.D.1
Cassaignau, A.M.2
Launay, H.M.3
Waudby, C.A.4
Wlodarski, T.5
Camilloni, C.6
Karyadi, M.E.7
Robertson, A.L.8
Wang, X.9
Wentink, A.S.10
-
46
-
-
4644285228
-
Protein folding in the cell: reshaping the folding funnel
-
Clark P.L. Protein folding in the cell: reshaping the folding funnel. Trends Biochem Sci 2004, 29:527-534.
-
(2004)
Trends Biochem Sci
, vol.29
, pp. 527-534
-
-
Clark, P.L.1
-
47
-
-
84948470148
-
Cotranslational protein folding on the ribosome monitored in real time
-
Holtkamp W., Kokic G., Jager M., Mittelstaet J., Komar A.A., Rodnina M.V. Cotranslational protein folding on the ribosome monitored in real time. Science 2015, 350:1104-1107.
-
(2015)
Science
, vol.350
, pp. 1104-1107
-
-
Holtkamp, W.1
Kokic, G.2
Jager, M.3
Mittelstaet, J.4
Komar, A.A.5
Rodnina, M.V.6
-
48
-
-
0035816546
-
A newly synthesized, ribosome-bound polypeptide chain adopts conformations dissimilar from early in vitro refolding intermediates
-
Clark P.L., King J. A newly synthesized, ribosome-bound polypeptide chain adopts conformations dissimilar from early in vitro refolding intermediates. J Biol Chem 2001, 276:25411-25420.
-
(2001)
J Biol Chem
, vol.276
, pp. 25411-25420
-
-
Clark, P.L.1
King, J.2
-
49
-
-
52949153256
-
Cotranslational folding promotes β-helix formation and avoids aggregation in vivo
-
Evans M.S., Sander I.M., Clark P.L. Cotranslational folding promotes β-helix formation and avoids aggregation in vivo. J Mol Biol 2008, 383:683-692.
-
(2008)
J Mol Biol
, vol.383
, pp. 683-692
-
-
Evans, M.S.1
Sander, I.M.2
Clark, P.L.3
-
50
-
-
0033607484
-
Process of biosynthetic protein folding determines the rapid formation of native structure
-
Fedorov A.N., Baldwin T.O. Process of biosynthetic protein folding determines the rapid formation of native structure. J Mol Biol 1999, 294:579-586.
-
(1999)
J Mol Biol
, vol.294
, pp. 579-586
-
-
Fedorov, A.N.1
Baldwin, T.O.2
-
51
-
-
0032983520
-
Co-translational domain folding as the structural basis for the rapid de novo folding of firefly luciferase
-
Frydman J., Erdjument-Bromage H., Tempst P., Hartl F.U. Co-translational domain folding as the structural basis for the rapid de novo folding of firefly luciferase. Nat Struct Biol 1999, 6:697-705.
-
(1999)
Nat Struct Biol
, vol.6
, pp. 697-705
-
-
Frydman, J.1
Erdjument-Bromage, H.2
Tempst, P.3
Hartl, F.U.4
-
52
-
-
84903526606
-
Defective pre-mRNA splicing in PKD1 due to presumed missense and synonymous mutations causing autosomal dominant polycystic disease
-
Gonzalez-Paredes F.J., Ramos-Trujillo E., Claverie-Martin F. Defective pre-mRNA splicing in PKD1 due to presumed missense and synonymous mutations causing autosomal dominant polycystic disease. Gene 2014, 546:243-249.
-
(2014)
Gene
, vol.546
, pp. 243-249
-
-
Gonzalez-Paredes, F.J.1
Ramos-Trujillo, E.2
Claverie-Martin, F.3
-
53
-
-
47549097539
-
Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution
-
Drummond D.A., Wilke C.O. Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution. Cell 2008, 134:341-352.
-
(2008)
Cell
, vol.134
, pp. 341-352
-
-
Drummond, D.A.1
Wilke, C.O.2
-
54
-
-
62049083910
-
Transient ribosomal attenuation coordinates protein synthesis and co-translational folding
-
Zhang G., Hubalewska M., Ignatova Z. Transient ribosomal attenuation coordinates protein synthesis and co-translational folding. Nat Struct Mol Biol 2009, 16:274-280.
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 274-280
-
-
Zhang, G.1
Hubalewska, M.2
Ignatova, Z.3
-
55
-
-
84925553022
-
Local slowdown of translation by nonoptimal codons promotes nascent-chain recognition by SRP in vivo
-
Pechmann S., Chartron J.W., Frydman J. Local slowdown of translation by nonoptimal codons promotes nascent-chain recognition by SRP in vivo. Nat Struct Mol Biol 2014, 21:1100-1105.
-
(2014)
Nat Struct Mol Biol
, vol.21
, pp. 1100-1105
-
-
Pechmann, S.1
Chartron, J.W.2
Frydman, J.3
-
56
-
-
77949456534
-
Increased incidence of rare codon clusters at 5' and 3' gene termini: implications for function
-
Clarke T.F., Clark P.L. Increased incidence of rare codon clusters at 5' and 3' gene termini: implications for function. BMC Genomics 2010, 11:118.
-
(2010)
BMC Genomics
, vol.11
, pp. 118
-
-
Clarke, T.F.1
Clark, P.L.2
-
57
-
-
0037320652
-
Synonymous mutations in the human dopamine receptor D2 (DRD2) affect mRNA stability and synthesis of the receptor
-
Duan J., Wainwright M.S., Comeron J.M., Saitou N., Sanders A.R., Gelernter J., Gejman P.V. Synonymous mutations in the human dopamine receptor D2 (DRD2) affect mRNA stability and synthesis of the receptor. Hum Mol Genet 2003, 12:205-216.
-
(2003)
Hum Mol Genet
, vol.12
, pp. 205-216
-
-
Duan, J.1
Wainwright, M.S.2
Comeron, J.M.3
Saitou, N.4
Sanders, A.R.5
Gelernter, J.6
Gejman, P.V.7
-
58
-
-
84890446345
-
A serine sensor for multicellularity in a bacterium
-
Subramaniam A.R., Deloughery A., Bradshaw N., Chen Y., O'Shea E., Losick R., Chai Y. A serine sensor for multicellularity in a bacterium. eLife 2013, 2:e01501.
-
(2013)
eLife
, vol.2
, pp. e01501
-
-
Subramaniam, A.R.1
Deloughery, A.2
Bradshaw, N.3
Chen, Y.4
O'Shea, E.5
Losick, R.6
Chai, Y.7
-
59
-
-
84874722535
-
Non-optimal codon usage is a mechanism to achieve circadian clock conditionality
-
Xu Y., Ma P., Shah P., Rokas A., Liu Y., Johnson C.H. Non-optimal codon usage is a mechanism to achieve circadian clock conditionality. Nature 2013, 495:116-120.
-
(2013)
Nature
, vol.495
, pp. 116-120
-
-
Xu, Y.1
Ma, P.2
Shah, P.3
Rokas, A.4
Liu, Y.5
Johnson, C.H.6
-
60
-
-
84878912996
-
Arrest peptides: cis-acting modulators of translation
-
Ito K., Chiba S. Arrest peptides: cis-acting modulators of translation. Ann Rev Biochem 2013, 82:171-202.
-
(2013)
Ann Rev Biochem
, vol.82
, pp. 171-202
-
-
Ito, K.1
Chiba, S.2
-
61
-
-
54249096045
-
Electrostatics in the ribosomal tunnel modulate chain elongation rates
-
Lu J., Deutsch C. Electrostatics in the ribosomal tunnel modulate chain elongation rates. J Mol Biol 2008, 384:73-86.
-
(2008)
J Mol Biol
, vol.384
, pp. 73-86
-
-
Lu, J.1
Deutsch, C.2
-
62
-
-
34547569922
-
Mapping the electrostatic potential within the ribosomal exit tunnel
-
Lu J., Kobertz W.R., Deutsch C. Mapping the electrostatic potential within the ribosomal exit tunnel. J Mol Biol 2007, 371:1378-1391.
-
(2007)
J Mol Biol
, vol.371
, pp. 1378-1391
-
-
Lu, J.1
Kobertz, W.R.2
Deutsch, C.3
-
63
-
-
58549114677
-
Slow peptide bond formation by proline and other N-alkylamino acids in translation
-
Pavlov M.Y., Watts R.E., Tan Z., Cornish V.W., Ehrenberg M., Forster A.C. Slow peptide bond formation by proline and other N-alkylamino acids in translation. Proc Natl Acad Sci U S A 2009, 106:50-54.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 50-54
-
-
Pavlov, M.Y.1
Watts, R.E.2
Tan, Z.3
Cornish, V.W.4
Ehrenberg, M.5
Forster, A.C.6
-
64
-
-
84874611913
-
Nascent peptides that block protein synthesis in bacteria
-
Woolstenhulme C.J., Parajuli S., Healey D.W., Valverde D.P., Petersen E.N., Starosta A.L., Guydosh N.R., Johnson W.E., Wilson D.N., Buskirk A.R. Nascent peptides that block protein synthesis in bacteria. Proc Natl Acad Sci U S A 2013, 110:E878-E887.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. E878-E887
-
-
Woolstenhulme, C.J.1
Parajuli, S.2
Healey, D.W.3
Valverde, D.P.4
Petersen, E.N.5
Starosta, A.L.6
Guydosh, N.R.7
Johnson, W.E.8
Wilson, D.N.9
Buskirk, A.R.10
-
65
-
-
11844292767
-
MRNA helicase activity of the ribosome
-
Takyar S., Hickerson R.P., Noller H.F. mRNA helicase activity of the ribosome. Cell 2005, 120:49-58.
-
(2005)
Cell
, vol.120
, pp. 49-58
-
-
Takyar, S.1
Hickerson, R.P.2
Noller, H.F.3
-
66
-
-
79959676389
-
The ribosome uses two active mechanisms to unwind messenger RNA during translation
-
Qu X., Wen J.D., Lancaster L., Noller H.F., Bustamante C., Tinoco I. The ribosome uses two active mechanisms to unwind messenger RNA during translation. Nature 2011, 475:118-121.
-
(2011)
Nature
, vol.475
, pp. 118-121
-
-
Qu, X.1
Wen, J.D.2
Lancaster, L.3
Noller, H.F.4
Bustamante, C.5
Tinoco, I.6
-
67
-
-
85027939461
-
Dynamics of translation by single ribosomes through mRNA secondary structures
-
Chen C., Zhang H., Broitman S.L., Reiche M., Farrell I., Cooperman B.S., Goldman Y.E. Dynamics of translation by single ribosomes through mRNA secondary structures. Nat Struct Mol Biol 2013, 20:582-588.
-
(2013)
Nat Struct Mol Biol
, vol.20
, pp. 582-588
-
-
Chen, C.1
Zhang, H.2
Broitman, S.L.3
Reiche, M.4
Farrell, I.5
Cooperman, B.S.6
Goldman, Y.E.7
-
68
-
-
68449092202
-
Architecture and secondary structure of an entire HIV-1 RNA genome
-
Watts J.M., Dang K.K., Gorelick R.J., Leonard C.W., Bess J.W., Swanstrom R., Burch C.L., Weeks K.M. Architecture and secondary structure of an entire HIV-1 RNA genome. Nature 2009, 460:711-716.
-
(2009)
Nature
, vol.460
, pp. 711-716
-
-
Watts, J.M.1
Dang, K.K.2
Gorelick, R.J.3
Leonard, C.W.4
Bess, J.W.5
Swanstrom, R.6
Burch, C.L.7
Weeks, K.M.8
-
69
-
-
33845899137
-
Human catechol-O-methyltransferase haplotypes modulate protein expression by altering mRNA secondary structure
-
Nackley A.G., Shabalina S.A., Tchivileva I.E., Satterfield K., Korchynskyi O., Makarov S.S., Maixner W., Diatchenko L. Human catechol-O-methyltransferase haplotypes modulate protein expression by altering mRNA secondary structure. Science 2006, 314:1930-1933.
-
(2006)
Science
, vol.314
, pp. 1930-1933
-
-
Nackley, A.G.1
Shabalina, S.A.2
Tchivileva, I.E.3
Satterfield, K.4
Korchynskyi, O.5
Makarov, S.S.6
Maixner, W.7
Diatchenko, L.8
-
70
-
-
59749098821
-
Frameshifting RNA pseudoknots: structure and mechanism
-
Giedroc D.P., Cornish P.V. Frameshifting RNA pseudoknots: structure and mechanism. Virus Res 2009, 139:193-208.
-
(2009)
Virus Res
, vol.139
, pp. 193-208
-
-
Giedroc, D.P.1
Cornish, P.V.2
-
71
-
-
84927635725
-
Determinants of the rate of mRNA translocation in bacterial protein synthesis
-
Borg A., Ehrenberg M. Determinants of the rate of mRNA translocation in bacterial protein synthesis. J Mol Biol 2015, 427:1835-1847.
-
(2015)
J Mol Biol
, vol.427
, pp. 1835-1847
-
-
Borg, A.1
Ehrenberg, M.2
-
72
-
-
84958965273
-
Slowing translation between protein domains by increasing affinity between mrnas and the ribosomal anti-Shine-Dalgarno sequence improves solubility
-
Vasquez K.A., Hatridge T.A., Curtis N.C., Contreras L.M. Slowing translation between protein domains by increasing affinity between mrnas and the ribosomal anti-Shine-Dalgarno sequence improves solubility. ACS Synth Biol 2016, 5:133-145.
-
(2016)
ACS Synth Biol
, vol.5
, pp. 133-145
-
-
Vasquez, K.A.1
Hatridge, T.A.2
Curtis, N.C.3
Contreras, L.M.4
|