메뉴 건너뛰기




Volumn 6, Issue , 2016, Pages

RNA-Seq reveals 10 novel promising candidate genes affecting milk protein concentration in the Chinese Holstein population

Author keywords

[No Author keywords available]

Indexed keywords

MILK PROTEIN;

EID: 84974712439     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep26813     Document Type: Article
Times cited : (64)

References (68)
  • 1
    • 84858043632 scopus 로고    scopus 로고
    • Old and new stories: Revelations from functional analysis of the bovine mammary transcriptome during the lactation cycle
    • Bionaz, M. et al. Old and new stories: revelations from functional analysis of the bovine mammary transcriptome during the lactation cycle. PLoS One 7, e33268 (2012).
    • (2012) PLoS One , vol.7 , pp. e33268
    • Bionaz, M.1
  • 2
    • 0028894299 scopus 로고
    • Mapping quantitative trait loci controlling milk production in dairy cattle by exploiting progeny testing
    • Georges, M. et al. Mapping quantitative trait loci controlling milk production in dairy cattle by exploiting progeny testing. Genetics 139, 907-20 (1995).
    • (1995) Genetics , vol.139 , pp. 907-920
    • Georges, M.1
  • 3
    • 67349112823 scopus 로고    scopus 로고
    • Genome-wide association analysis in domestic animals: A powerful approach for genetic dissection of trait loci
    • Andersson, L. Genome-wide association analysis in domestic animals: a powerful approach for genetic dissection of trait loci. Genetica 136, 341-9 (2009).
    • (2009) Genetica , vol.136 , pp. 341-349
    • Andersson, L.1
  • 4
    • 70449413833 scopus 로고    scopus 로고
    • Effect of polymorphisms in the FASN, OLR1, PPARGC1A, PRL and STAT5A genes on bovine milk-fat composition
    • Schennink, A., Bovenhuis, H., Leon-Kloosterziel, K. M., van Arendonk, J. A. & Visker, M. H. Effect of polymorphisms in the FASN, OLR1, PPARGC1A, PRL and STAT5A genes on bovine milk-fat composition. Anim Genet 40, 909-16 (2009).
    • (2009) Anim Genet , vol.40 , pp. 909-916
    • Schennink, A.1    Bovenhuis, H.2    Leon-Kloosterziel, K.M.3    Van Arendonk, J.A.4    Visker, M.H.5
  • 5
    • 10744231897 scopus 로고    scopus 로고
    • Genetic and functional confirmation of the causality of the DGAT1 K232A quantitative trait nucleotide in affecting milk yield and composition
    • Grisart, B. et al. Genetic and functional confirmation of the causality of the DGAT1 K232A quantitative trait nucleotide in affecting milk yield and composition. Proceedings of the National Academy of Sciences 101, 2398-2403 (2004).
    • (2004) Proceedings of the National Academy of Sciences , vol.101 , pp. 2398-2403
    • Grisart, B.1
  • 6
    • 0037274657 scopus 로고    scopus 로고
    • Molecular dissection of a quantitative trait locus: A phenylalanine-to-tyrosine substitution in the transmembrane domain of the bovine growth hormone receptor is associated with a major effect on milk yield and composition
    • Blott, S. et al. Molecular dissection of a quantitative trait locus: a phenylalanine-to-tyrosine substitution in the transmembrane domain of the bovine growth hormone receptor is associated with a major effect on milk yield and composition. Genetics 163, 253-66 (2003).
    • (2003) Genetics , vol.163 , pp. 253-266
    • Blott, S.1
  • 7
    • 78751570979 scopus 로고    scopus 로고
    • RNA sequencing: Advances, challenges and opportunities
    • Ozsolak, F. & Milos, P. M. RNA sequencing: advances, challenges and opportunities. Nat Rev Genet 12, 87-98 (2011).
    • (2011) Nat Rev Genet , vol.12 , pp. 87-98
    • Ozsolak, F.1    Milos, P.M.2
  • 9
    • 77952123055 scopus 로고    scopus 로고
    • Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
    • Trapnell, C. et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol 28, 511-5 (2010).
    • (2010) Nat Biotechnol , vol.28 , pp. 511-515
    • Trapnell, C.1
  • 10
    • 56749098074 scopus 로고    scopus 로고
    • Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
    • Pan, Q., Shai, O., Lee, L. J., Frey, B. J. & Blencowe, B. J. Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing. Nat Genet 40, 1413-5 (2008).
    • (2008) Nat Genet , vol.40 , pp. 1413-1415
    • Pan, Q.1    Shai, O.2    Lee, L.J.3    Frey, B.J.4    Blencowe, B.J.5
  • 11
    • 84903724741 scopus 로고    scopus 로고
    • Characterization of transcriptional complexity during adipose tissue development in bovines of different ages and sexes
    • Zhou, Y. et al. Characterization of transcriptional complexity during adipose tissue development in bovines of different ages and sexes. PLoS One 9, e101261 (2014).
    • (2014) PLoS One , vol.9 , pp. e101261
    • Zhou, Y.1
  • 12
    • 84903993552 scopus 로고    scopus 로고
    • Comparison of five different RNA sources to examine the lactating bovine mammary gland transcriptome using RNA-Sequencing
    • Canovas, A. et al. Comparison of five different RNA sources to examine the lactating bovine mammary gland transcriptome using RNA-Sequencing. Sci Rep 4, 5297 (2014).
    • (2014) Sci Rep , vol.4 , pp. 5297
    • Canovas, A.1
  • 13
    • 84899084810 scopus 로고    scopus 로고
    • Transcriptional profiling of mammary gland in Holstein cows with extremely different milk protein and fat percentage using RNA sequencing
    • Cui, X. et al. Transcriptional profiling of mammary gland in Holstein cows with extremely different milk protein and fat percentage using RNA sequencing. BMC Genomics 15, 226 (2014).
    • (2014) BMC Genomics , vol.15 , pp. 226
    • Cui, X.1
  • 14
    • 84928249669 scopus 로고    scopus 로고
    • Transcriptome analysis of cattle muscle identifies potential markers for skeletal muscle growth rate and major cell types
    • Guo, B. et al. Transcriptome analysis of cattle muscle identifies potential markers for skeletal muscle growth rate and major cell types. BMC Genomics 16, 177 (2015).
    • (2015) BMC Genomics , vol.16 , pp. 177
    • Guo, B.1
  • 15
    • 84925969785 scopus 로고    scopus 로고
    • Global liver gene expression differences in Nelore steers with divergent residual feed intake phenotypes
    • Tizioto, P. C. et al. Global liver gene expression differences in Nelore steers with divergent residual feed intake phenotypes. BMC Genomics 16, 242 (2015).
    • (2015) BMC Genomics , vol.16 , pp. 242
    • Tizioto, P.C.1
  • 16
    • 78650140999 scopus 로고    scopus 로고
    • Comparison of transcriptomic landscapes of bovine embryos using RNA-Seq
    • Huang, W. & Khatib, H. Comparison of transcriptomic landscapes of bovine embryos using RNA-Seq. BMC Genomics 11, 711 (2010).
    • (2010) BMC Genomics , vol.11 , pp. 711
    • Huang, W.1    Khatib, H.2
  • 17
    • 84926629675 scopus 로고    scopus 로고
    • RNA-seq transcriptional profiling of peripheral blood leukocytes from cattle infected with mycobacterium bovis
    • McLoughlin, K. E. et al. RNA-seq Transcriptional Profiling of Peripheral Blood Leukocytes from Cattle Infected with Mycobacterium bovis. Front Immunol 5, 396 (2014).
    • (2014) Front Immunol , vol.5 , pp. 396
    • McLoughlin, K.E.1
  • 18
    • 0015345062 scopus 로고
    • Stearyl CoA as a precursor of oleic acid and glycerolipids in mammary microsomes from lactating bovine: Possible regulatory step in milk triglyceride synthesis
    • Kinsella, J. E. Stearyl CoA as a precursor of oleic acid and glycerolipids in mammary microsomes from lactating bovine: possible regulatory step in milk triglyceride synthesis. Lipids 7, 349-55 (1972).
    • (1972) Lipids , vol.7 , pp. 349-355
    • Kinsella, J.E.1
  • 19
    • 84947034235 scopus 로고    scopus 로고
    • Proteolytic systems in milk: Perspectives on the evolutionary function within the mammary gland and the infant
    • Dallas, D. C., Murray, N. M. & Gan, J. Proteolytic Systems in Milk: Perspectives on the Evolutionary Function within the Mammary Gland and the Infant. J Mammary Gland Biol Neoplasia (2015).
    • (2015) J Mammary Gland Biol Neoplasia
    • Dallas, D.C.1    Murray, N.M.2    Gan, J.3
  • 20
    • 84882977720 scopus 로고    scopus 로고
    • Splicing variants of SERPINA1 gene in ovine milk: Characterization of cDNA and identification of polymorphisms
    • Marchitelli, C., Crisa, A., Mostarda, E., Napolitano, F. & Moioli, B. Splicing variants of SERPINA1 gene in ovine milk: characterization of cDNA and identification of polymorphisms. PLoS One 8, e73020 (2013).
    • (2013) PLoS One , vol.8 , pp. e73020
    • Marchitelli, C.1    Crisa, A.2    Mostarda, E.3    Napolitano, F.4    Moioli, B.5
  • 21
    • 0036784342 scopus 로고    scopus 로고
    • Alpha(1)-antitrypsin and antichymotrypsin in human milk: Origin, concentrations, and stability
    • Chowanadisai, W. & Lonnerdal, B. Alpha(1)-antitrypsin and antichymotrypsin in human milk: origin, concentrations, and stability. Am J Clin Nutr 76, 828-33 (2002).
    • (2002) Am J Clin Nutr , vol.76 , pp. 828-833
    • Chowanadisai, W.1    Lonnerdal, B.2
  • 22
    • 22144445335 scopus 로고    scopus 로고
    • Association of the protease inhibitor gene with production traits in Holstein dairy cattle
    • Khatib, H., Heifetz, E. & Dekkers, J. C. Association of the protease inhibitor gene with production traits in Holstein dairy cattle. J Dairy Sci 88, 1208-13 (2005).
    • (2005) J Dairy Sci , vol.88 , pp. 1208-1213
    • Khatib, H.1    Heifetz, E.2    Dekkers, J.C.3
  • 23
    • 78049367108 scopus 로고    scopus 로고
    • Polymorphisms in bovine immune genes and their associations with somatic cell count and milk production in dairy cattle
    • Beecher, C. et al. Polymorphisms in bovine immune genes and their associations with somatic cell count and milk production in dairy cattle. BMC Genet 11, 99 (2010).
    • (2010) BMC Genet , vol.11 , pp. 99
    • Beecher, C.1
  • 24
    • 77955016728 scopus 로고    scopus 로고
    • Association of polymorphism of the alpha 1-antitrypsin gene with milk production traits in Chinese Holstein
    • Li, Q. L. et al. Association of polymorphism of the alpha 1-antitrypsin gene with milk production traits in Chinese Holstein. South African Journal of Animal Science 40, 113-120 (2010).
    • (2010) South African Journal of Animal Science , vol.40 , pp. 113-120
    • Li, Q.L.1
  • 25
    • 0028045016 scopus 로고
    • Induction of gene expression during involution of the lactating mammary gland of the rat
    • Guenette, R. S. et al. Induction of gene expression during involution of the lactating mammary gland of the rat. J Mol Endocrinol 12, 47-60 (1994).
    • (1994) J Mol Endocrinol , vol.12 , pp. 47-60
    • Guenette, R.S.1
  • 26
    • 0033548566 scopus 로고    scopus 로고
    • Clusterin has chaperone-like activity similar to that of small heat shock proteins
    • Humphreys, D. T., Carver, J. A., Easterbrook-Smith, S. B. & Wilson, M. R. Clusterin has chaperone-like activity similar to that of small heat shock proteins. J Biol Chem 274, 6875-81 (1999).
    • (1999) J Biol Chem , vol.274 , pp. 6875-6881
    • Humphreys, D.T.1    Carver, J.A.2    Easterbrook-Smith, S.B.3    Wilson, M.R.4
  • 27
    • 84863845292 scopus 로고    scopus 로고
    • Molecular cloning, promoter analysis, SNP detection of Clusterin gene and their associations with mastitis in Chinese Holstein cows
    • Wang, Z., Huang, J., Zhong, J. & Wang, G. Molecular cloning, promoter analysis, SNP detection of Clusterin gene and their associations with mastitis in Chinese Holstein cows. Mol Biol Rep 39, 2439-45 (2012).
    • (2012) Mol Biol Rep , vol.39 , pp. 2439-2445
    • Wang, Z.1    Huang, J.2    Zhong, J.3    Wang, G.4
  • 28
    • 42249083200 scopus 로고    scopus 로고
    • Ciliary neurotrophic factor receptor alpha subunit-modulated multiple downstream signaling pathways in hepatic cancer cell lines and their biological implications
    • Hu, X. et al. Ciliary neurotrophic factor receptor alpha subunit-modulated multiple downstream signaling pathways in hepatic cancer cell lines and their biological implications. Hepatology 47, 1298-308 (2008).
    • (2008) Hepatology , vol.47 , pp. 1298-1308
    • Hu, X.1
  • 29
    • 34248226985 scopus 로고    scopus 로고
    • Key stages in mammary gland development. Secretory activation in the mammary gland: It's not just about milk protein synthesis
    • Anderson, S. M., Rudolph, M. C., McManaman, J. L. & Neville, M. C. Key stages in mammary gland development. Secretory activation in the mammary gland: it's not just about milk protein synthesis! Breast Cancer Res 9, 204 (2007).
    • (2007) Breast Cancer Res , vol.9 , pp. 204
    • Anderson, S.M.1    Rudolph, M.C.2    McManaman, J.L.3    Neville, M.C.4
  • 30
    • 79958116645 scopus 로고    scopus 로고
    • Gene networks driving bovine mammary protein synthesis during the lactation cycle
    • Bionaz, M. & Loor, J. J. Gene networks driving bovine mammary protein synthesis during the lactation cycle. Bioinform Biol Insights 5, 83-98 (2011).
    • (2011) Bioinform Biol Insights , vol.5 , pp. 83-98
    • Bionaz, M.1    Loor, J.J.2
  • 31
    • 63549110286 scopus 로고    scopus 로고
    • Ciliary neurotrophic factor (CNTF) plus soluble CNTF receptor alpha increases cyclooxygenase-2 expression, PGE2 release and interferon-gamma-induced CD40 in murine microglia
    • Lin, H. W., Jain, M. R., Li, H. & Levison, S. W. Ciliary neurotrophic factor (CNTF) plus soluble CNTF receptor alpha increases cyclooxygenase-2 expression, PGE2 release and interferon-gamma-induced CD40 in murine microglia. J Neuroinflammation 6, 7 (2009).
    • (2009) J Neuroinflammation , vol.6 , pp. 7
    • Lin, H.W.1    Jain, M.R.2    Li, H.3    Levison, S.W.4
  • 32
    • 0022399581 scopus 로고
    • Tyrosine kinase receptor with extensive homology to EGF receptor shares chromosomal location with neu oncogene
    • Coussens, L. et al. Tyrosine kinase receptor with extensive homology to EGF receptor shares chromosomal location with neu oncogene. Science 230, 1132-9 (1985).
    • (1985) Science , vol.230 , pp. 1132-1139
    • Coussens, L.1
  • 33
    • 0033542381 scopus 로고    scopus 로고
    • Expression of dominant-negative ErbB2 in the mammary gland of transgenic mice reveals a role in lobuloalveolar development and lactation
    • Jones, F. E. & Stern, D. F. Expression of dominant-negative ErbB2 in the mammary gland of transgenic mice reveals a role in lobuloalveolar development and lactation. Oncogene 18, 3481-90 (1999).
    • (1999) Oncogene , vol.18 , pp. 3481-3490
    • Jones, F.E.1    Stern, D.F.2
  • 34
    • 70350785179 scopus 로고    scopus 로고
    • Ubiquitin ligase Nedd4L targets activated Smad2/3 to limit TGF-beta signaling
    • Gao, S. et al. Ubiquitin ligase Nedd4L targets activated Smad2/3 to limit TGF-beta signaling. Mol Cell 36, 457-68 (2009).
    • (2009) Mol Cell , vol.36 , pp. 457-468
    • Gao, S.1
  • 35
    • 0034625368 scopus 로고    scopus 로고
    • Sialomucin complex (rat Muc4) is regulated by transforming growth factor beta in mammary gland by a novel post-translational mechanism
    • Price-Schiavi, S. A., Zhu, X., Aquinin, R. & Carraway, K. L. Sialomucin complex (rat Muc4) is regulated by transforming growth factor beta in mammary gland by a novel post-translational mechanism. J Biol Chem 275, 17800-7 (2000).
    • (2000) J Biol Chem , vol.275 , pp. 17800-17807
    • Price-Schiavi, S.A.1    Zhu, X.2    Aquinin, R.3    Carraway, K.L.4
  • 36
    • 0027286692 scopus 로고
    • Targeting expression of a transforming growth factor beta 1 transgene to the pregnant mammary gland inhibits alveolar development and lactation
    • Jhappan, C. et al. Targeting expression of a transforming growth factor beta 1 transgene to the pregnant mammary gland inhibits alveolar development and lactation. EMBO J 12, 1835-45 (1993).
    • (1993) EMBO J , vol.12 , pp. 1835-1845
    • Jhappan, C.1
  • 37
    • 0027498034 scopus 로고
    • TGF beta suppresses casein synthesis in mouse mammary explants and may play a role in controlling milk levels during pregnancy
    • Robinson, S. D., Roberts, A. B. & Daniel, C. W. TGF beta suppresses casein synthesis in mouse mammary explants and may play a role in controlling milk levels during pregnancy. J Cell Biol 120, 245-51 (1993).
    • (1993) J Cell Biol , vol.120 , pp. 245-251
    • Robinson, S.D.1    Roberts, A.B.2    Daniel, C.W.3
  • 38
    • 0027535320 scopus 로고
    • TGF beta induction of extracellular matrix associated proteins in normal and transformed human mammary epithelial cells in culture is independent of growth effects
    • Stampfer, M. R., Yaswen, P., Alhadeff, M. & Hosoda, J. TGF beta induction of extracellular matrix associated proteins in normal and transformed human mammary epithelial cells in culture is independent of growth effects. J Cell Physiol 155, 210-21 (1993).
    • (1993) J Cell Physiol , vol.155 , pp. 210-221
    • Stampfer, M.R.1    Yaswen, P.2    Alhadeff, M.3    Hosoda, J.4
  • 39
    • 37849045369 scopus 로고    scopus 로고
    • Identification of angiogenin as the osteoclastic bone resorptioninhibitory factor in bovine milk
    • Morita, Y., Matsuyama, H., Serizawa, A., Takeya, T. & Kawakami, H. Identification of angiogenin as the osteoclastic bone resorptioninhibitory factor in bovine milk. Bone 42, 380-7 (2008).
    • (2008) Bone , vol.42 , pp. 380-387
    • Morita, Y.1    Matsuyama, H.2    Serizawa, A.3    Takeya, T.4    Kawakami, H.5
  • 40
    • 77749334643 scopus 로고    scopus 로고
    • Variability of mammary blood flow in lactating Holstein-Friesian cows during the first twelve weeks of lactation
    • Gotze, A., Honnens, A., Flachowsky, G. & Bollwein, H. Variability of mammary blood flow in lactating Holstein-Friesian cows during the first twelve weeks of lactation. J Dairy Sci 93, 38-44 (2010).
    • (2010) J Dairy Sci , vol.93 , pp. 38-44
    • Gotze, A.1    Honnens, A.2    Flachowsky, G.3    Bollwein, H.4
  • 41
    • 84907700634 scopus 로고    scopus 로고
    • Angiogenin interacts with ribonuclease inhibitor regulating PI3K/AKT/mTOR signaling pathway in bladder cancer cells
    • Peng, Y. et al. Angiogenin interacts with ribonuclease inhibitor regulating PI3K/AKT/mTOR signaling pathway in bladder cancer cells. Cell Signal 26, 2782-92 (2014).
    • (2014) Cell Signal , vol.26 , pp. 2782-2792
    • Peng, Y.1
  • 42
    • 0032759101 scopus 로고    scopus 로고
    • Identification and characterization of large galactosyltransferase gene families: Galactosyltransferases for all functions
    • Amado, M., Almeida, R., Schwientek, T. & Clausen, H. Identification and characterization of large galactosyltransferase gene families: galactosyltransferases for all functions. Biochimica Et Biophysica Acta-General Subjects 1473, 35-53 (1999).
    • (1999) Biochimica et Biophysica Acta-General Subjects , vol.1473 , pp. 35-53
    • Amado, M.1    Almeida, R.2    Schwientek, T.3    Clausen, H.4
  • 43
    • 84864440424 scopus 로고    scopus 로고
    • Association of polymorphism of the beta(1, 4)-galactosyltransferase-I gene with milk production traits in Holsteins
    • Shahbazkia, H. R., Aminlari, M. & Cravador, A. Association of polymorphism of the beta(1, 4)-galactosyltransferase-I gene with milk production traits in Holsteins. Mol Biol Rep 39, 6715-21 (2012).
    • (2012) Mol Biol Rep , vol.39 , pp. 6715-6721
    • Shahbazkia, H.R.1    Aminlari, M.2    Cravador, A.3
  • 44
    • 84868255400 scopus 로고    scopus 로고
    • Detection of genetic association and functional polymorphisms of UGDH affecting milk production trait in Chinese Holstein cattle
    • Xu, Q. et al. Detection of genetic association and functional polymorphisms of UGDH affecting milk production trait in Chinese Holstein cattle. BMC Genomics 13, 590 (2012).
    • (2012) BMC Genomics , vol.13 , pp. 590
    • Xu, Q.1
  • 45
    • 0031793127 scopus 로고    scopus 로고
    • Heat shock protein 70 kDa: Molecular biology, biochemistry, and physiology
    • Kiang, J. G. & Tsokos, G. C. Heat shock protein 70 kDa: molecular biology, biochemistry, and physiology. Pharmacol Ther 80, 183-201 (1998).
    • (1998) Pharmacol Ther , vol.80 , pp. 183-201
    • Kiang, J.G.1    Tsokos, G.C.2
  • 46
    • 34247118887 scopus 로고    scopus 로고
    • Signalling to translation: How signal transduction pathways control the protein synthetic machinery
    • Proud, C. G. Signalling to translation: how signal transduction pathways control the protein synthetic machinery. Biochem J 403, 217-34 (2007).
    • (2007) Biochem J , vol.403 , pp. 217-234
    • Proud, C.G.1
  • 48
    • 0028906486 scopus 로고
    • Analysis of the proliferative response to lysophosphatidic acid in primary cultures of mammary epithelium: Differences between normal and tumor cells
    • Imagawa, W., Bandyopadhyay, G. K. & Nandi, S. Analysis of the proliferative response to lysophosphatidic acid in primary cultures of mammary epithelium: differences between normal and tumor cells. Exp Cell Res 216, 178-86 (1995).
    • (1995) Exp Cell Res , vol.216 , pp. 178-186
    • Imagawa, W.1    Bandyopadhyay, G.K.2    Nandi, S.3
  • 49
    • 78649391161 scopus 로고    scopus 로고
    • Alpha-lactalbumin in human milk alters the proteolytic degradation of soluble CD14 by forming a complex
    • Spencer, W. J. et al. Alpha-lactalbumin in human milk alters the proteolytic degradation of soluble CD14 by forming a complex. Pediatr Res 68, 490-3 (2010).
    • (2010) Pediatr Res , vol.68 , pp. 490-493
    • Spencer, W.J.1
  • 50
    • 65549113578 scopus 로고    scopus 로고
    • The bovine lactation genome: Insights into the evolution of mammalian milk
    • Lemay, D. G. et al. The bovine lactation genome: insights into the evolution of mammalian milk. Genome Biol 10, R43 (2009).
    • (2009) Genome Biol , vol.10 , pp. R43
    • Lemay, D.G.1
  • 51
    • 0032518176 scopus 로고    scopus 로고
    • Human cytosolic asparaginyl-tRNA synthetase: CDNA sequence, functional expression in Escherichia coli and characterization as human autoantigen
    • Beaulande, M., Tarbouriech, N. & Hartlein, M. Human cytosolic asparaginyl-tRNA synthetase: cDNA sequence, functional expression in Escherichia coli and characterization as human autoantigen. Nucleic Acids Res 26, 521-4 (1998).
    • (1998) Nucleic Acids Res , vol.26 , pp. 521-524
    • Beaulande, M.1    Tarbouriech, N.2    Hartlein, M.3
  • 52
    • 0037447101 scopus 로고    scopus 로고
    • Gatm a creatine synthesis enzyme, is imprinted in mouse placenta
    • Sandell, L. L., Guan, X. J., Ingram, R. & Tilghman, S. M. Gatm, a creatine synthesis enzyme, is imprinted in mouse placenta. Proc Natl Acad Sci USA 100, 4622-7 (2003).
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 4622-4627
    • Sandell, L.L.1    Guan, X.J.2    Ingram, R.3    Tilghman, S.M.4
  • 53
    • 84923103109 scopus 로고    scopus 로고
    • Cysteine dioxygenase type 1 promotes adipogenesis via interaction with peroxisome proliferator-activated receptor gamma
    • Deng, P. et al. Cysteine dioxygenase type 1 promotes adipogenesis via interaction with peroxisome proliferator-activated receptor gamma. Biochem Biophys Res Commun 458, 123-7 (2015).
    • (2015) Biochem Biophys Res Commun , vol.458 , pp. 123-127
    • Deng, P.1
  • 54
    • 63649118039 scopus 로고    scopus 로고
    • Insulin regulates milk protein synthesis at multiple levels in the bovine mammary gland
    • Menzies, K. K., Lefevre, C., Macmillan, K. L. & Nicholas, K. R. Insulin regulates milk protein synthesis at multiple levels in the bovine mammary gland. Funct Integr Genomics 9, 197-217 (2009).
    • (2009) Funct Integr Genomics , vol.9 , pp. 197-217
    • Menzies, K.K.1    Lefevre, C.2    MacMillan, K.L.3    Nicholas, K.R.4
  • 55
    • 0033989153 scopus 로고    scopus 로고
    • CRIM1, a novel gene encoding a cysteine-rich repeat protein, is developmentally regulated and implicated in vertebrate CNS development and organogenesis
    • Kolle, G., Georgas, K., Holmes, G. P., Little, M. H. & Yamada, T. CRIM1, a novel gene encoding a cysteine-rich repeat protein, is developmentally regulated and implicated in vertebrate CNS development and organogenesis. Mechanisms of Development 90, 181-193 (2000).
    • (2000) Mechanisms of Development , vol.90 , pp. 181-193
    • Kolle, G.1    Georgas, K.2    Holmes, G.P.3    Little, M.H.4    Yamada, T.5
  • 56
    • 1542294200 scopus 로고    scopus 로고
    • Gene expression profiling of mammary gland development reveals putative roles for death receptors and immune mediators in post-lactational regression
    • Clarkson, R. W., Wayland, M. T., Lee, J., Freeman, T. & Watson, C. J. Gene expression profiling of mammary gland development reveals putative roles for death receptors and immune mediators in post-lactational regression. Breast Cancer Res 6, R92-109 (2004).
    • (2004) Breast Cancer Res , vol.6 , pp. R92-109
    • Clarkson, R.W.1    Wayland, M.T.2    Lee, J.3    Freeman, T.4    Watson, C.J.5
  • 57
    • 44949111326 scopus 로고    scopus 로고
    • The cost of generic clinical mastitis in dairy cows as estimated by using dynamic programming
    • Bar, D. et al. The cost of generic clinical mastitis in dairy cows as estimated by using dynamic programming. J Dairy Sci 91, 2205-14 (2008).
    • (2008) J Dairy Sci , vol.91 , pp. 2205-2214
    • Bar, D.1
  • 58
    • 84950267209 scopus 로고    scopus 로고
    • Characterization and Comparative Analysis of the Milk Transcriptome in Two Dairy Sheep Breeds using RNA Sequencing
    • Suarez-Vega, A. et al. Characterization and Comparative Analysis of the Milk Transcriptome in Two Dairy Sheep Breeds using RNA Sequencing. Sci Rep 5, 18399 (2015).
    • (2015) Sci Rep , vol.5 , pp. 18399
    • Suarez-Vega, A.1
  • 59
    • 84879835007 scopus 로고    scopus 로고
    • RNA sequencing of the human milk fat layer transcriptome reveals distinct gene expression profiles at three stages of lactation
    • Lemay, D. G. et al. RNA sequencing of the human milk fat layer transcriptome reveals distinct gene expression profiles at three stages of lactation. PLoS One 8, e67531 (2013).
    • (2013) PLoS One , vol.8 , pp. e67531
    • Lemay, D.G.1
  • 60
    • 1042302206 scopus 로고    scopus 로고
    • Short-term changes of mRNA expression of various inflammatory factors and milk proteins in mammary tissue during LPS-induced mastitis
    • Schmitz, S., Pfaffl, M. W., Meyer, H. H. D. & Bruckmaier, R. M. Short-term changes of mRNA expression of various inflammatory factors and milk proteins in mammary tissue during LPS-induced mastitis. Domestic Animal Endocrinology 26, 111-126 (2004).
    • (2004) Domestic Animal Endocrinology , vol.26 , pp. 111-126
    • Schmitz, S.1    Pfaffl, M.W.2    Meyer, H.H.D.3    Bruckmaier, R.M.4
  • 61
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead, B., Trapnell, C., Pop, M. & Salzberg, S. L. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10, R25 (2009).
    • (2009) Genome Biol , vol.10 , pp. R25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 62
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: Discovering splice junctions with RNA-Seq
    • Trapnell, C., Pachter, L. & Salzberg, S. L. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25, 1105-11 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 63
    • 84859885816 scopus 로고    scopus 로고
    • Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
    • Trapnell, C. et al. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat Protoc 7, 562-78 (2012).
    • (2012) Nat Protoc , vol.7 , pp. 562-578
    • Trapnell, C.1
  • 64
    • 84928987900 scopus 로고    scopus 로고
    • HTSeq-a Python framework to work with high-throughput sequencing data
    • Anders, S., Pyl, P. T. & Huber, W. HTSeq-a Python framework to work with high-throughput sequencing data. Bioinformatics 31, 166-9 (2015).
    • (2015) Bioinformatics , vol.31 , pp. 166-169
    • Anders, S.1    Pyl, P.T.2    Huber, W.3
  • 65
    • 84924629414 scopus 로고    scopus 로고
    • Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
    • Love, M. I., Huber, W. & Anders, S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol 15, 550 (2014).
    • (2014) Genome Biol , vol.15 , pp. 550
    • Love, M.I.1    Huber, W.2    Anders, S.3
  • 66
    • 84908127503 scopus 로고    scopus 로고
    • Power analysis and sample size estimation for RNA-Seq differential expression
    • Ching, T., Huang, S. & Garmire, L. X. Power analysis and sample size estimation for RNA-Seq differential expression. RNA 20, 1684-96 (2014).
    • (2014) RNA , vol.20 , pp. 1684-1696
    • Ching, T.1    Huang, S.2    Garmire, L.X.3
  • 67
    • 33846689706 scopus 로고    scopus 로고
    • Using GOstats to test gene lists for GO term association
    • Falcon, S. & Gentleman, R. Using GOstats to test gene lists for GO term association. Bioinformatics 23, 257-8 (2007).
    • (2007) Bioinformatics , vol.23 , pp. 257-258
    • Falcon, S.1    Gentleman, R.2
  • 68
    • 67651172988 scopus 로고    scopus 로고
    • Identification of internal control genes for quantitative polymerase chain reaction in mammary tissue of lactating cows receiving lipid supplements
    • Kadegowda, A. K. et al. Identification of internal control genes for quantitative polymerase chain reaction in mammary tissue of lactating cows receiving lipid supplements. J Dairy Sci 92, 2007-19 (2009).
    • (2009) J Dairy Sci , vol.92 , pp. 2007-2019
    • Kadegowda, A.K.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.