Comparison of microbial DNA enrichment tools for metagenomic whole genome sequencing

Journal of Microbiological Methods

Volumn 127, Issue , 2016, Pages 141-145

  Thoendel, Matthew ^a   Jeraldo, Patricio R ^a   Greenwood Quaintance, Kerryl E ^a   Yao, Janet Z ^a   Chia, Nicholas ^a   Hanssen, Arlen D ^a   Abdel, Matthew P ^a   Patel, Robin ^a  

^a MAYO CLINIC   (United States)

Author keywords

Clinical samples; Enrichment; Metagenomics; Pathogen detection; Whole genome sequencing

Indexed keywords

BACTERIAL DNA; DYES, REAGENTS, INDICATORS, MARKERS AND BUFFERS;

ARTHROPLASTY; ARTICLE; BACTERIUM IDENTIFICATION; CONCENTRATION (PARAMETERS); CONTROLLED STUDY; DIAGNOSTIC EQUIPMENT; DNA DETERMINATION; DNA ENRICHMENT TOOL; DNA EXTRACTION; DNA SEQUENCE; DNA TEMPLATE; ENTEROCOCCUS FAECALIS; GENE SEQUENCE; HUMAN; JOINT PROSTHESIS; METAGENOMICS; METHICILLIN RESISTANT STAPHYLOCOCCUS AUREUS; NONHUMAN; PRIORITY JOURNAL; PROPIONIBACTERIUM; PROSTHESIS INFECTION; PROSTHESIS LOOSENING; PSEUDOMONAS; QUANTITATIVE ANALYSIS; REAL TIME POLYMERASE CHAIN REACTION; STAPHYLOCOCCUS EPIDERMIDIS; STREPTOCOCCUS; BACTERIAL GENOME; COMPARATIVE STUDY; GENETICS; HIGH THROUGHPUT SEQUENCING; ISOLATION AND PURIFICATION; METAGENOME; MICROBIOLOGY; MICROFLORA; PROCEDURES; STAPHYLOCOCCUS AUREUS; STAPHYLOCOCCUS INFECTION;

DNA, BACTERIAL; GENOME, BACTERIAL; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HUMANS; INDICATORS AND REAGENTS; METAGENOME; METAGENOMICS; MICROBIOTA; STAPHYLOCOCCAL INFECTIONS; STAPHYLOCOCCUS AUREUS;

EID: 84973915626     PISSN: 01677012     EISSN: 18728359     Source Type: Journal    
DOI: 10.1016/j.mimet.2016.05.022     Document Type: Article

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